Wall clock time and date at job start Tue Mar 31 2020 22:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29031 * 124.91396 * 2 1 4 4 C 1.31791 * 117.12077 * 179.74692 * 3 2 1 5 5 C 1.33640 * 114.50204 * 0.51932 * 4 3 2 6 6 C 1.50694 * 126.03944 * 179.78391 * 5 4 3 7 7 N 1.46507 * 109.46717 * 89.71947 * 6 5 4 8 8 C 1.34773 * 119.99656 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00495 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.99758 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47029 * 179.97438 * 10 8 7 12 12 N 1.46907 * 109.46855 * 179.97438 * 11 10 8 13 13 C 1.48528 * 111.00111 * 287.39512 * 12 11 10 14 14 C 1.55099 * 103.28381 * 200.33449 * 13 12 11 15 15 C 1.54593 * 102.84490 * 37.30637 * 14 13 12 16 16 O 1.42898 * 110.30719 * 97.12142 * 15 14 13 17 17 C 1.50702 * 110.30772 * 219.18689 * 15 14 13 18 18 H 1.08002 * 120.00299 * 117.21456 * 17 15 14 19 19 C 1.37884 * 119.99942 * 296.93014 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 C 1.47903 * 110.99661 * 169.99828 * 12 11 10 26 26 S 1.70977 * 124.91907 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47247 * 269.96005 * 1 2 3 28 28 H 1.09000 * 109.46743 * 29.96575 * 1 2 3 29 29 H 1.09001 * 109.46909 * 149.96384 * 1 2 3 30 30 H 1.08001 * 122.74625 * 180.32784 * 4 3 2 31 31 H 1.08997 * 109.47023 * 329.72171 * 6 5 4 32 32 H 1.08997 * 109.47545 * 209.71709 * 6 5 4 33 33 H 0.96997 * 119.99939 * 359.97438 * 7 6 5 34 34 H 1.09000 * 109.47690 * 59.99751 * 10 8 7 35 35 H 1.09007 * 109.47234 * 299.99260 * 10 8 7 36 36 H 1.08997 * 109.47048 * 59.99988 * 11 10 8 37 37 H 1.08993 * 109.46895 * 299.99418 * 11 10 8 38 38 H 1.09001 * 110.66718 * 318.71611 * 13 12 11 39 39 H 1.09006 * 110.66736 * 81.67838 * 13 12 11 40 40 H 1.09001 * 110.71257 * 278.99719 * 14 13 12 41 41 H 1.08998 * 110.81298 * 155.66416 * 14 13 12 42 42 H 0.96691 * 114.00808 * 62.79185 * 16 15 14 43 43 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.91924 * 26.49349 * 25 12 11 45 45 H 1.08997 * 110.08057 * 265.28894 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0052 5 6 3.9355 -0.4006 -0.0012 6 6 5.3575 -0.8994 -0.0021 7 7 5.8187 -1.0620 1.3789 8 6 7.0694 -1.5003 1.6244 9 8 7.8128 -1.7605 0.7021 10 6 7.5437 -1.6681 3.0449 11 6 8.9875 -2.1744 3.0440 12 7 9.4500 -2.3375 4.4288 13 6 9.6867 -1.0187 5.0697 14 6 10.6315 -1.3610 6.2512 15 6 11.5412 -2.4603 5.6564 16 8 12.7692 -1.8926 5.1963 17 6 11.8124 -3.5279 6.6849 18 1 11.4773 -4.5403 6.5138 19 6 12.4935 -3.2134 7.8418 20 7 12.9015 -1.9807 8.0502 21 14 12.8364 -4.5383 9.1132 22 1 13.6528 -5.6154 8.4978 23 1 13.5769 -3.9473 10.2566 24 1 11.5517 -5.1055 9.5961 25 6 10.7472 -3.0465 4.4743 26 16 2.4857 -1.4019 -0.0006 27 1 -0.3634 -0.0007 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8897 -0.5144 30 1 4.2532 1.7001 0.0108 31 1 5.9947 -0.1794 -0.5156 32 1 5.4056 -1.8590 -0.5166 33 1 5.2243 -0.8535 2.1165 34 1 6.9067 -2.3886 3.5580 35 1 7.4951 -0.7086 3.5600 36 1 9.6248 -1.4543 2.5309 37 1 9.0357 -3.1339 2.5292 38 1 10.1743 -0.3351 4.3746 39 1 8.7508 -0.5937 5.4325 40 1 10.0647 -1.7462 7.0989 41 1 11.2187 -0.4902 6.5424 42 1 13.3021 -1.4890 5.8949 43 1 13.3804 -1.7594 8.8643 44 1 11.2920 -2.8842 3.5442 45 1 10.5854 -4.1134 4.6283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602852059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:09 Heat of formation + Delta-G solvation = -66.361857 kcal Electronic energy + Delta-G solvation = -26069.826681 eV Core-core repulsion = 22212.792100 eV Total energy + Delta-G solvation = -3857.034581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.09392 -40.61275 -39.94170 -36.87679 -36.25632 -34.13077 -33.55213 -32.99877 -30.80886 -29.95445 -29.49692 -26.82531 -26.10425 -24.65485 -23.90613 -22.01975 -21.32869 -21.23216 -20.45129 -19.16928 -19.08274 -18.17803 -17.26308 -16.99291 -16.80935 -16.63156 -16.08934 -16.06496 -15.77281 -15.68226 -15.25846 -14.84999 -14.63889 -14.32041 -14.02791 -13.92200 -13.89106 -13.64647 -13.51482 -13.41415 -13.21225 -12.99222 -12.81671 -12.57691 -12.48358 -12.33821 -12.30908 -12.03296 -11.89330 -11.80728 -11.15501 -11.04356 -10.67814 -10.59156 -10.34046 -10.21110 -10.09047 -9.82804 -9.38514 -8.19462 -6.33106 -0.44404 0.27192 0.69039 1.43562 1.44303 1.52126 1.57879 1.67116 2.21809 2.41221 3.01358 3.16819 3.18630 3.61399 3.81565 3.87856 3.99527 4.05796 4.13219 4.15863 4.30063 4.38618 4.53243 4.57147 4.59101 4.61161 4.65331 4.66655 4.72412 4.84529 4.88784 4.99748 5.01629 5.11763 5.20551 5.25924 5.29428 5.43636 5.63212 5.78482 5.96149 6.14208 6.21220 6.43273 6.68413 6.70858 7.16026 7.36389 7.45307 8.86433 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.001723 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.383430 B =16249.339995 C =16507.902251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.047 3.953 3 N -0.510 5.510 4 C 0.059 3.941 5 C -0.259 4.259 6 C 0.205 3.795 7 N -0.716 5.716 8 C 0.522 3.478 9 O -0.581 6.581 10 C -0.122 4.122 11 C 0.065 3.935 12 N -0.510 5.510 13 C 0.039 3.961 14 C -0.109 4.109 15 C 0.223 3.777 16 O -0.604 6.604 17 C -0.554 4.554 18 H 0.054 0.946 19 C 0.028 3.972 20 N -0.914 5.914 21 Si 0.960 3.040 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.271 1.271 25 C 0.061 3.939 26 S 0.162 5.838 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.186 0.814 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.024 0.976 37 H 0.068 0.932 38 H 0.033 0.967 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.377 0.623 43 H 0.269 0.731 44 H 0.027 0.973 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.347 4.655 -14.058 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.229 4.229 3 N -0.225 5.225 4 C -0.094 4.094 5 C -0.381 4.381 6 C 0.079 3.921 7 N -0.370 5.370 8 C 0.310 3.690 9 O -0.461 6.461 10 C -0.162 4.162 11 C -0.064 4.064 12 N -0.235 5.235 13 C -0.089 4.089 14 C -0.148 4.148 15 C 0.184 3.816 16 O -0.413 6.413 17 C -0.592 4.592 18 H 0.072 0.928 19 C -0.172 4.172 20 N -0.554 5.554 21 Si 0.786 3.214 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.196 1.196 25 C -0.067 4.067 26 S 0.418 5.582 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.203 0.797 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.227 0.773 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.866 3.497 -14.923 30.931 hybrid contribution 1.925 0.950 1.070 2.399 sum -24.941 4.447 -13.853 28.874 Atomic orbital electron populations 1.20676 0.82950 1.05436 1.05254 1.27762 1.03378 0.91041 1.00755 1.66421 1.05312 1.32695 1.18089 1.22025 0.91276 0.96375 0.99735 1.25817 0.99561 0.96755 1.15951 1.19405 0.87184 1.01566 0.83934 1.45998 1.14211 1.67925 1.08845 1.20882 0.81200 0.75266 0.91692 1.90715 1.55845 1.51747 1.47771 1.21495 0.96633 1.05422 0.92660 1.21915 0.95253 1.00590 0.88644 1.64752 1.26314 1.16305 1.16098 1.23339 0.99602 0.90202 0.95726 1.22767 0.97027 0.98450 0.96540 1.19666 0.81681 0.90383 0.89898 1.86096 1.35890 1.78762 1.40570 1.21917 1.37343 0.96124 1.03847 0.92796 1.25694 0.94502 0.97597 0.99449 1.69734 1.38936 1.18942 1.27827 0.85586 0.78358 0.79248 0.78247 1.20209 1.20593 1.19593 1.22667 0.88572 0.98655 0.96770 1.84073 0.96251 1.10972 1.66912 0.88045 0.88983 0.87994 0.79691 0.89436 0.90585 0.74810 0.85998 0.86928 0.95763 0.91352 0.94843 0.88185 0.92952 0.93229 0.77304 0.92180 0.95423 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 71.24 0.75 0.28 16 2 C 0.05 0.59 7.39 88.52 0.65 1.24 16 3 N -0.51 -8.56 10.54 -191.44 -2.02 -10.58 16 4 C 0.06 0.87 11.25 83.66 0.94 1.81 16 5 C -0.26 -3.51 5.97 24.64 0.15 -3.37 16 6 C 0.20 3.15 6.20 85.63 0.53 3.68 16 7 N -0.72 -11.40 5.55 -466.79 -2.59 -13.99 16 8 C 0.52 12.04 7.83 87.66 0.69 12.73 16 9 O -0.58 -18.60 15.98 -3.04 -0.05 -18.65 16 10 C -0.12 -2.70 5.79 29.85 0.17 -2.53 16 11 C 0.06 2.06 4.00 86.30 0.34 2.41 16 12 N -0.51 -19.05 5.25 -882.67 -4.63 -23.68 16 13 C 0.04 1.43 5.91 86.71 0.51 1.94 16 14 C -0.11 -5.04 5.43 31.86 0.17 -4.87 16 15 C 0.22 11.40 0.99 -10.66 -0.01 11.39 16 16 O -0.60 -32.82 12.92 -148.98 -1.93 -34.74 16 17 C -0.55 -30.39 8.11 25.60 0.21 -30.18 16 18 H 0.05 2.95 7.34 -2.91 -0.02 2.93 16 19 C 0.03 1.47 5.26 84.66 0.45 1.92 16 20 N -0.91 -49.33 10.88 21.45 0.23 -49.10 16 21 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.06 2.77 6.13 86.44 0.53 3.30 16 26 S 0.16 1.82 23.18 -56.49 -1.31 0.51 16 27 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.42 4.65 8.46 -92.71 -0.78 3.87 16 34 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.11 2.10 7.37 -2.38 -0.02 2.08 16 36 H 0.02 0.85 7.79 -2.39 -0.02 0.83 16 37 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 38 H 0.03 1.24 7.81 -2.39 -0.02 1.23 16 39 H 0.10 3.00 7.80 -2.38 -0.02 2.98 16 40 H 0.05 2.55 7.86 -2.39 -0.02 2.53 16 41 H 0.05 2.40 8.02 -2.39 -0.02 2.38 16 42 H 0.38 20.76 7.17 -74.06 -0.53 20.23 16 43 H 0.27 13.83 8.31 -92.70 -0.77 13.06 16 44 H 0.03 1.27 7.59 -2.39 -0.02 1.25 16 45 H 0.07 3.38 7.39 -2.39 -0.02 3.36 16 Total: -1.00 -68.22 383.72 -4.48 -72.69 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: -0.29 Total: 33.12 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.08 Total: -0.24 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -9.01 Total: -97.36 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -1.97 Total: -53.39 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.31 Total: 0.51 kcal Total: -68.22 -4.48 -72.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602852059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.330 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds