Wall clock time and date at job start Tue Mar 31 2020 22:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29033 * 124.91744 * 2 1 4 4 C 1.31777 * 117.12479 * 179.67800 * 3 2 1 5 5 C 1.33641 * 114.49779 * 0.51257 * 4 3 2 6 6 C 1.50707 * 126.03693 * 179.79179 * 5 4 3 7 7 N 1.46496 * 109.47429 * 89.71851 * 6 5 4 8 8 C 1.34776 * 120.00287 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99546 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00101 * 180.02562 * 8 7 6 11 11 C 1.53001 * 109.47186 * 179.97438 * 10 8 7 12 12 N 1.46900 * 109.46857 * 180.02562 * 11 10 8 13 13 C 1.48720 * 111.01831 * 54.49058 * 12 11 10 14 14 C 1.54381 * 104.51692 * 158.96284 * 13 12 11 15 15 C 1.54257 * 105.14978 * 336.27274 * 14 13 12 16 16 O 1.42910 * 110.32027 * 241.04997 * 15 14 13 17 17 C 1.50697 * 110.32628 * 118.84329 * 15 14 13 18 18 H 1.07995 * 120.00073 * 241.44522 * 17 15 14 19 19 C 1.37883 * 119.99811 * 61.45328 * 17 15 14 20 20 N 1.31514 * 119.99933 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99722 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47538 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46864 * 119.99931 * 21 19 17 24 24 H 1.48499 * 109.47368 * 239.99818 * 21 19 17 25 25 C 1.48567 * 110.99718 * 170.00040 * 12 11 10 26 26 S 1.70976 * 124.91720 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47472 * 270.04353 * 1 2 3 28 28 H 1.09006 * 109.47067 * 30.04599 * 1 2 3 29 29 H 1.08999 * 109.46922 * 150.04250 * 1 2 3 30 30 H 1.07999 * 122.75430 * 180.33376 * 4 3 2 31 31 H 1.09003 * 109.47010 * 329.71967 * 6 5 4 32 32 H 1.08993 * 109.47091 * 209.72276 * 6 5 4 33 33 H 0.96998 * 119.99580 * 359.97438 * 7 6 5 34 34 H 1.09003 * 109.47124 * 59.99720 * 10 8 7 35 35 H 1.09000 * 109.47065 * 299.99558 * 10 8 7 36 36 H 1.09003 * 109.47184 * 59.99920 * 11 10 8 37 37 H 1.09000 * 109.46892 * 299.99828 * 11 10 8 38 38 H 1.09004 * 110.38960 * 40.24251 * 13 12 11 39 39 H 1.08996 * 110.50963 * 277.74694 * 13 12 11 40 40 H 1.09002 * 110.32526 * 217.32092 * 14 13 12 41 41 H 1.08998 * 110.32190 * 95.21733 * 14 13 12 42 42 H 0.96699 * 114.00154 * 298.54485 * 16 15 14 43 43 H 0.97002 * 119.99478 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.41133 * 82.17552 * 25 12 11 45 45 H 1.09004 * 110.50861 * 319.79003 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 0.0066 5 6 3.9353 -0.4006 0.0016 6 6 5.3574 -0.8995 0.0026 7 7 5.8173 -1.0611 1.3841 8 6 7.0677 -1.4992 1.6313 9 8 7.8120 -1.7601 0.7099 10 6 7.5405 -1.6660 3.0524 11 6 8.9843 -2.1723 3.0534 12 7 9.4449 -2.3355 4.4388 13 6 8.5205 -3.2097 5.2088 14 6 9.3673 -3.7183 6.3953 15 6 10.8312 -3.6110 5.9211 16 8 11.4460 -4.9011 5.9128 17 6 11.6016 -2.6686 6.8095 18 1 12.0410 -1.7735 6.3948 19 6 11.7454 -2.9492 8.1518 20 7 11.2108 -4.0396 8.6566 21 14 12.7009 -1.7813 9.2528 22 1 13.1984 -0.6371 8.4475 23 1 11.8116 -1.2779 10.3304 24 1 13.8518 -2.5000 9.8563 25 6 10.7479 -3.0477 4.4862 26 16 2.4856 -1.4020 0.0006 27 1 -0.3634 0.0008 1.0276 28 1 -0.3633 0.8896 -0.5146 29 1 -0.3633 -0.8904 -0.5132 30 1 4.2532 1.7000 0.0125 31 1 5.9953 -0.1799 -0.5108 32 1 5.4061 -1.8595 -0.5112 33 1 5.2221 -0.8520 2.1209 34 1 6.9029 -2.3861 3.5653 35 1 7.4914 -0.7062 3.5667 36 1 9.6221 -1.4525 2.5404 37 1 9.0330 -3.1322 2.5393 38 1 8.1876 -4.0456 4.5935 39 1 7.6656 -2.6378 5.5695 40 1 9.1176 -4.7549 6.6218 41 1 9.2063 -3.0906 7.2718 42 1 11.4853 -5.3237 6.7817 43 1 11.3117 -4.2367 9.6009 44 1 11.5676 -2.3532 4.3021 45 1 10.7667 -3.8583 3.7577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602852061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:12 Heat of formation + Delta-G solvation = -39.603085 kcal Electronic energy + Delta-G solvation = -26163.612656 eV Core-core repulsion = 22307.738423 eV Total energy + Delta-G solvation = -3855.874233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35548 -39.76564 -38.29363 -35.58374 -35.00779 -32.75451 -32.07542 -31.80915 -29.95800 -28.56534 -27.66462 -25.86429 -24.56525 -23.93012 -22.79120 -20.83697 -20.08936 -19.75762 -19.30071 -18.58138 -17.21715 -16.98869 -16.43031 -15.90843 -15.54244 -15.25253 -15.03461 -14.84680 -14.59142 -14.19063 -14.09334 -13.75563 -13.61479 -13.52010 -13.10858 -13.03904 -12.67984 -12.59875 -12.28633 -12.06579 -11.86218 -11.75957 -11.32385 -11.07056 -10.91818 -10.71123 -10.49348 -10.40432 -10.27734 -10.21071 -10.11013 -9.88883 -9.71353 -9.40283 -9.28313 -9.01067 -8.54121 -8.09065 -7.80702 -6.13545 -4.18641 0.09777 0.78863 1.22616 2.26318 2.52465 3.04806 3.26696 3.35131 3.40834 3.63930 4.20081 4.38005 4.48051 4.52067 4.68259 4.86299 4.88026 4.92216 5.06353 5.16654 5.22018 5.25909 5.31940 5.34662 5.64965 5.66970 5.72508 5.89334 6.02606 6.07847 6.11138 6.20639 6.31259 6.41997 6.54711 6.90261 7.07550 7.18212 7.23088 7.25653 7.57834 7.68247 7.72171 7.89001 8.04298 8.25915 8.84434 9.46060 9.54974 10.94004 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022424 B = 0.001814 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.355502 B =15430.209498 C =15685.337058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.050 3.950 3 N -0.478 5.478 4 C 0.064 3.936 5 C -0.252 4.252 6 C 0.201 3.799 7 N -0.734 5.734 8 C 0.519 3.481 9 O -0.536 6.536 10 C -0.138 4.138 11 C 0.061 3.939 12 N -0.502 5.502 13 C 0.028 3.972 14 C -0.120 4.120 15 C 0.248 3.752 16 O -0.595 6.595 17 C -0.516 4.516 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.901 5.901 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.054 3.946 26 S 0.141 5.859 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.179 0.821 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.403 0.597 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.028 0.972 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.382 0.618 43 H 0.264 0.736 44 H 0.077 0.923 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.017 5.979 -15.737 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.228 4.228 3 N -0.193 5.193 4 C -0.089 4.089 5 C -0.373 4.373 6 C 0.076 3.924 7 N -0.388 5.388 8 C 0.306 3.694 9 O -0.412 6.412 10 C -0.178 4.178 11 C -0.068 4.068 12 N -0.226 5.226 13 C -0.099 4.099 14 C -0.159 4.159 15 C 0.208 3.792 16 O -0.403 6.403 17 C -0.554 4.554 18 H 0.081 0.919 19 C -0.137 4.137 20 N -0.542 5.542 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.073 4.073 26 S 0.396 5.604 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.196 0.804 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.237 0.763 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.232 0.768 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -21.877 5.797 -16.680 28.115 hybrid contribution 0.529 0.577 1.276 1.497 sum -21.348 6.373 -15.404 27.086 Atomic orbital electron populations 1.20495 0.84972 1.04421 1.04195 1.27199 1.02066 0.91214 1.02290 1.66357 1.04804 1.31591 1.16503 1.21840 0.91177 0.95869 1.00012 1.25961 0.99696 0.96588 1.15076 1.19456 0.86650 1.01777 0.84556 1.46162 1.15196 1.69545 1.07927 1.20904 0.80704 0.75613 0.92182 1.90718 1.54368 1.49438 1.46707 1.21707 0.98909 1.04696 0.92492 1.21972 0.93263 1.00484 0.91109 1.65425 1.03238 1.44334 1.09630 1.23207 0.96311 0.94057 0.96356 1.22843 0.97061 0.99572 0.96445 1.19282 0.88713 0.81740 0.89488 1.86095 1.83482 1.34029 1.36736 1.21693 1.33208 1.07407 0.93092 0.91893 1.25016 0.95162 0.95488 0.98010 1.69711 1.45201 1.25348 1.13926 0.86424 0.79629 0.80976 0.80266 1.19666 1.21041 1.21043 1.22987 0.90753 0.95595 0.98000 1.84167 0.97129 1.11720 1.67423 0.89270 0.89080 0.89920 0.80440 0.89190 0.90198 0.76290 0.88716 0.87807 0.90272 0.94448 0.95379 0.91578 0.93138 0.90611 0.76794 0.92583 0.90454 0.94954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.46 36.00 0.38 0.06 16 2 C 0.05 0.35 7.39 -13.45 -0.10 0.25 16 3 N -0.48 -4.33 10.54 -11.86 -0.13 -4.45 16 4 C 0.06 0.51 11.25 -19.19 -0.22 0.30 16 5 C -0.25 -1.89 5.97 -35.92 -0.21 -2.11 16 6 C 0.20 1.67 6.20 -5.19 -0.03 1.64 16 7 N -0.73 -6.59 5.55 -61.47 -0.34 -6.93 16 8 C 0.52 6.39 7.83 -10.99 -0.09 6.31 16 9 O -0.54 -8.63 15.98 5.56 0.09 -8.54 16 10 C -0.14 -1.71 5.42 -27.88 -0.15 -1.86 16 11 C 0.06 0.99 4.35 -3.82 -0.02 0.98 16 12 N -0.50 -9.75 5.49 -229.82 -1.26 -11.01 16 13 C 0.03 0.54 5.12 -2.09 -0.01 0.53 16 14 C -0.12 -2.78 5.55 -25.35 -0.14 -2.92 16 15 C 0.25 6.23 1.05 -90.39 -0.10 6.14 16 16 O -0.59 -15.70 12.94 -35.23 -0.46 -16.15 16 17 C -0.52 -14.01 8.10 -34.44 -0.28 -14.28 16 18 H 0.06 1.73 7.53 -52.49 -0.40 1.34 16 19 C 0.06 1.72 5.02 -17.82 -0.09 1.63 16 20 N -0.90 -24.23 10.82 55.43 0.60 -23.63 16 21 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.05 1.21 5.77 -2.18 -0.01 1.20 16 26 S 0.14 0.93 23.18 -107.50 -2.49 -1.56 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 2.84 8.46 -40.82 -0.35 2.50 16 34 H 0.09 1.07 6.84 -51.93 -0.36 0.71 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 37 H 0.04 0.65 7.84 -51.93 -0.41 0.24 16 38 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 39 H 0.07 1.10 7.68 -51.93 -0.40 0.70 16 40 H 0.05 1.17 7.98 -51.93 -0.41 0.76 16 41 H 0.08 1.90 7.23 -51.93 -0.38 1.53 16 42 H 0.38 10.14 7.33 45.56 0.33 10.48 16 43 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.08 1.75 7.67 -51.93 -0.40 1.35 16 45 H 0.03 0.72 7.76 -51.93 -0.40 0.31 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -31.68 382.48 -10.40 -42.08 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.09 Total: 10.59 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.07 Total: -2.16 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -1.13 Total: -46.01 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.37 Total: -24.69 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.68 -10.40 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602852061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.473 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds