Wall clock time and date at job start Tue Mar 31 2020 22:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29033 * 124.91744 * 2 1 4 4 C 1.31777 * 117.12479 * 179.67800 * 3 2 1 5 5 C 1.33641 * 114.49779 * 0.51257 * 4 3 2 6 6 C 1.50707 * 126.03693 * 179.79179 * 5 4 3 7 7 N 1.46496 * 109.47429 * 89.71851 * 6 5 4 8 8 C 1.34776 * 120.00287 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99546 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00101 * 180.02562 * 8 7 6 11 11 C 1.53001 * 109.47186 * 179.97438 * 10 8 7 12 12 N 1.46900 * 109.46857 * 180.02562 * 11 10 8 13 13 C 1.48720 * 111.01831 * 54.49058 * 12 11 10 14 14 C 1.54381 * 104.51692 * 158.96284 * 13 12 11 15 15 C 1.54257 * 105.14978 * 336.27274 * 14 13 12 16 16 O 1.42910 * 110.32027 * 241.04997 * 15 14 13 17 17 C 1.50697 * 110.32628 * 118.84329 * 15 14 13 18 18 H 1.07995 * 120.00073 * 241.44522 * 17 15 14 19 19 C 1.37883 * 119.99811 * 61.45328 * 17 15 14 20 20 N 1.31514 * 119.99933 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99722 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47538 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46864 * 119.99931 * 21 19 17 24 24 H 1.48499 * 109.47368 * 239.99818 * 21 19 17 25 25 C 1.48567 * 110.99718 * 170.00040 * 12 11 10 26 26 S 1.70976 * 124.91720 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47472 * 270.04353 * 1 2 3 28 28 H 1.09006 * 109.47067 * 30.04599 * 1 2 3 29 29 H 1.08999 * 109.46922 * 150.04250 * 1 2 3 30 30 H 1.07999 * 122.75430 * 180.33376 * 4 3 2 31 31 H 1.09003 * 109.47010 * 329.71967 * 6 5 4 32 32 H 1.08993 * 109.47091 * 209.72276 * 6 5 4 33 33 H 0.96998 * 119.99580 * 359.97438 * 7 6 5 34 34 H 1.09003 * 109.47124 * 59.99720 * 10 8 7 35 35 H 1.09000 * 109.47065 * 299.99558 * 10 8 7 36 36 H 1.09003 * 109.47184 * 59.99920 * 11 10 8 37 37 H 1.09000 * 109.46892 * 299.99828 * 11 10 8 38 38 H 1.09004 * 110.38960 * 40.24251 * 13 12 11 39 39 H 1.08996 * 110.50963 * 277.74694 * 13 12 11 40 40 H 1.09002 * 110.32526 * 217.32092 * 14 13 12 41 41 H 1.08998 * 110.32190 * 95.21733 * 14 13 12 42 42 H 0.96699 * 114.00154 * 298.54485 * 16 15 14 43 43 H 0.97002 * 119.99478 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.41133 * 82.17552 * 25 12 11 45 45 H 1.09004 * 110.50861 * 319.79003 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 0.0066 5 6 3.9353 -0.4006 0.0016 6 6 5.3574 -0.8995 0.0026 7 7 5.8173 -1.0611 1.3841 8 6 7.0677 -1.4992 1.6313 9 8 7.8120 -1.7601 0.7099 10 6 7.5405 -1.6660 3.0524 11 6 8.9843 -2.1723 3.0534 12 7 9.4449 -2.3355 4.4388 13 6 8.5205 -3.2097 5.2088 14 6 9.3673 -3.7183 6.3953 15 6 10.8312 -3.6110 5.9211 16 8 11.4460 -4.9011 5.9128 17 6 11.6016 -2.6686 6.8095 18 1 12.0410 -1.7735 6.3948 19 6 11.7454 -2.9492 8.1518 20 7 11.2108 -4.0396 8.6566 21 14 12.7009 -1.7813 9.2528 22 1 13.1984 -0.6371 8.4475 23 1 11.8116 -1.2779 10.3304 24 1 13.8518 -2.5000 9.8563 25 6 10.7479 -3.0477 4.4862 26 16 2.4856 -1.4020 0.0006 27 1 -0.3634 0.0008 1.0276 28 1 -0.3633 0.8896 -0.5146 29 1 -0.3633 -0.8904 -0.5132 30 1 4.2532 1.7000 0.0125 31 1 5.9953 -0.1799 -0.5108 32 1 5.4061 -1.8595 -0.5112 33 1 5.2221 -0.8520 2.1209 34 1 6.9029 -2.3861 3.5653 35 1 7.4914 -0.7062 3.5667 36 1 9.6221 -1.4525 2.5404 37 1 9.0330 -3.1322 2.5393 38 1 8.1876 -4.0456 4.5935 39 1 7.6656 -2.6378 5.5695 40 1 9.1176 -4.7549 6.6218 41 1 9.2063 -3.0906 7.2718 42 1 11.4853 -5.3237 6.7817 43 1 11.3117 -4.2367 9.6009 44 1 11.5676 -2.3532 4.3021 45 1 10.7667 -3.8583 3.7577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602852061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:12 Heat of formation + Delta-G solvation = -64.734881 kcal Electronic energy + Delta-G solvation = -26164.702452 eV Core-core repulsion = 22307.738423 eV Total energy + Delta-G solvation = -3856.964030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11090 -40.62714 -39.92244 -36.93365 -36.26385 -34.14585 -33.53725 -32.99168 -30.82089 -29.98043 -29.32370 -26.82740 -26.11184 -24.68865 -24.02618 -22.01412 -21.42183 -21.05968 -20.41002 -19.15423 -19.02266 -18.19660 -17.26011 -17.04781 -16.77108 -16.70199 -16.20222 -15.94314 -15.77861 -15.63909 -15.19005 -14.88530 -14.58225 -14.46499 -14.11328 -13.95244 -13.86770 -13.62633 -13.56248 -13.41539 -13.15616 -12.99300 -12.85121 -12.54592 -12.36907 -12.32570 -12.24178 -12.04266 -11.98835 -11.79804 -11.15199 -10.93367 -10.68041 -10.58615 -10.34482 -10.21628 -10.10135 -9.83052 -9.36634 -8.17290 -6.29665 -0.44651 0.26945 0.68832 1.40894 1.44333 1.55405 1.56972 1.67029 2.21658 2.42653 3.00327 3.18211 3.19099 3.61101 3.77090 3.90011 4.00638 4.06537 4.12136 4.16246 4.28207 4.36969 4.49620 4.55941 4.58477 4.59115 4.63676 4.66260 4.72648 4.86394 4.91610 4.97643 4.99629 5.08648 5.20370 5.26030 5.28513 5.39547 5.69113 5.80187 5.95839 6.16249 6.25966 6.42361 6.68259 6.75140 7.15043 7.38223 7.46313 8.88804 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022424 B = 0.001814 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.355502 B =15430.209498 C =15685.337058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.047 3.953 3 N -0.509 5.509 4 C 0.059 3.941 5 C -0.259 4.259 6 C 0.205 3.795 7 N -0.717 5.717 8 C 0.523 3.477 9 O -0.579 6.579 10 C -0.129 4.129 11 C 0.064 3.936 12 N -0.504 5.504 13 C 0.038 3.962 14 C -0.113 4.113 15 C 0.229 3.771 16 O -0.604 6.604 17 C -0.539 4.539 18 H 0.050 0.950 19 C 0.025 3.975 20 N -0.915 5.915 21 Si 0.958 3.042 22 H -0.274 1.274 23 H -0.277 1.277 24 H -0.281 1.281 25 C 0.060 3.940 26 S 0.160 5.840 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.187 0.813 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.415 0.585 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.042 0.958 39 H 0.098 0.902 40 H 0.041 0.959 41 H 0.051 0.949 42 H 0.377 0.623 43 H 0.267 0.733 44 H 0.067 0.933 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.093 6.700 -15.714 29.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.229 4.229 3 N -0.225 5.225 4 C -0.094 4.094 5 C -0.381 4.381 6 C 0.079 3.921 7 N -0.370 5.370 8 C 0.311 3.689 9 O -0.459 6.459 10 C -0.169 4.169 11 C -0.065 4.065 12 N -0.229 5.229 13 C -0.090 4.090 14 C -0.152 4.152 15 C 0.189 3.811 16 O -0.412 6.412 17 C -0.578 4.578 18 H 0.068 0.932 19 C -0.174 4.174 20 N -0.555 5.555 21 Si 0.784 3.216 22 H -0.198 1.198 23 H -0.203 1.203 24 H -0.207 1.207 25 C -0.068 4.068 26 S 0.416 5.584 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.204 0.796 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.252 0.748 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.116 0.884 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.226 0.774 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -24.005 6.526 -16.655 29.937 hybrid contribution 1.122 0.335 1.246 1.710 sum -22.883 6.861 -15.409 28.427 Atomic orbital electron populations 1.20673 0.82967 1.05436 1.05237 1.27758 1.03370 0.91025 1.00773 1.66415 1.05326 1.32666 1.18061 1.22032 0.91272 0.96380 0.99684 1.25821 0.99543 0.96741 1.15975 1.19409 0.87204 1.01571 0.83877 1.46000 1.14224 1.67918 1.08866 1.20822 0.81219 0.75306 0.91590 1.90713 1.55747 1.51665 1.47755 1.21609 0.96351 1.05905 0.93006 1.21942 0.95760 0.99950 0.88859 1.65395 1.02115 1.43732 1.11656 1.23182 0.96199 0.94893 0.94690 1.22627 0.96621 0.98708 0.97260 1.19573 0.89624 0.80867 0.90999 1.86090 1.83981 1.34764 1.36391 1.21863 1.34233 1.07625 0.94031 0.93158 1.25660 0.95849 0.96891 0.99012 1.69783 1.45390 1.26089 1.14260 0.85513 0.78459 0.79081 0.78545 1.19835 1.20291 1.20700 1.22821 0.92402 0.95354 0.96237 1.84084 0.96342 1.11045 1.66942 0.88078 0.88957 0.88015 0.79610 0.89278 0.90653 0.74843 0.86875 0.86071 0.91017 0.95544 0.93954 0.88402 0.94009 0.92996 0.77370 0.92316 0.91482 0.95240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 71.24 0.75 0.27 16 2 C 0.05 0.59 7.39 88.52 0.65 1.25 16 3 N -0.51 -8.57 10.54 -191.45 -2.02 -10.59 16 4 C 0.06 0.88 11.25 83.66 0.94 1.82 16 5 C -0.26 -3.51 5.97 24.64 0.15 -3.36 16 6 C 0.20 3.12 6.20 85.64 0.53 3.65 16 7 N -0.72 -11.38 5.55 -466.79 -2.59 -13.97 16 8 C 0.52 11.97 7.83 87.66 0.69 12.65 16 9 O -0.58 -18.24 15.98 -3.04 -0.05 -18.28 16 10 C -0.13 -2.85 5.42 29.85 0.16 -2.69 16 11 C 0.06 2.00 4.35 86.30 0.38 2.37 16 12 N -0.50 -19.02 5.49 -881.02 -4.83 -23.85 16 13 C 0.04 1.35 5.12 86.42 0.44 1.79 16 14 C -0.11 -5.20 5.55 31.49 0.17 -5.03 16 15 C 0.23 11.64 1.05 -10.65 -0.01 11.63 16 16 O -0.60 -32.48 12.94 -148.98 -1.93 -34.41 16 17 C -0.54 -29.66 8.10 25.60 0.21 -29.45 16 18 H 0.05 2.82 7.53 -2.91 -0.02 2.80 16 19 C 0.03 1.36 5.02 84.66 0.43 1.79 16 20 N -0.91 -49.33 10.82 21.45 0.23 -49.10 16 21 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 C 0.06 2.70 5.77 86.45 0.50 3.20 16 26 S 0.16 1.83 23.18 -56.49 -1.31 0.52 16 27 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.41 4.70 8.46 -92.71 -0.78 3.91 16 34 H 0.11 2.12 6.84 -2.39 -0.02 2.11 16 35 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 2.36 8.10 -2.39 -0.02 2.34 16 37 H 0.03 0.89 7.84 -2.39 -0.02 0.88 16 38 H 0.04 1.41 8.00 -2.38 -0.02 1.39 16 39 H 0.10 2.91 7.68 -2.39 -0.02 2.89 16 40 H 0.04 1.94 7.98 -2.39 -0.02 1.92 16 41 H 0.05 2.60 7.23 -2.39 -0.02 2.58 16 42 H 0.38 20.50 7.33 -74.06 -0.54 19.96 16 43 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 44 H 0.07 3.10 7.67 -2.39 -0.02 3.08 16 45 H 0.03 1.32 7.76 -2.39 -0.02 1.30 16 Total: -1.00 -68.39 382.48 -4.80 -73.18 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.30 Total: 31.54 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 5.98 Total: -0.12 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -9.21 Total: -97.51 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -1.98 Total: -52.69 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.31 Total: 0.52 kcal Total: -68.39 -4.80 -73.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602852061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.448 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds