Wall clock time and date at job start Tue Mar 31 2020 22:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31815 * 119.16095 * 2 1 4 4 C 1.32186 * 120.63858 * 179.88782 * 3 2 1 5 5 C 1.39024 * 119.27763 * 0.02562 * 4 3 2 6 6 C 1.37774 * 118.46200 * 0.11677 * 5 4 3 7 7 N 1.31602 * 119.16603 * 179.97438 * 2 1 3 8 8 C 1.50445 * 122.58412 * 179.74042 * 6 5 4 9 9 C 1.52809 * 110.44702 * 17.52826 * 8 6 5 10 10 C 1.53317 * 108.50608 * 308.98929 * 9 8 6 11 11 C 1.50338 * 118.73009 * 180.19775 * 5 4 3 12 12 H 1.08991 * 109.15034 * 77.08939 * 11 5 4 13 13 N 1.46500 * 109.30724 * 317.57729 * 11 5 4 14 14 S 1.65605 * 119.99737 * 124.46776 * 13 11 5 15 15 O 1.42104 * 104.27610 * 309.04029 * 14 13 11 16 16 O 1.42094 * 104.27521 * 181.18353 * 14 13 11 17 17 C 1.81403 * 104.44619 * 65.11167 * 14 13 11 18 18 C 1.53000 * 109.46708 * 180.02562 * 17 14 13 19 19 C 1.53007 * 109.47018 * 180.02562 * 18 17 14 20 20 C 1.50690 * 109.47178 * 179.97438 * 19 18 17 21 21 H 1.08008 * 120.00013 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00311 * 179.72625 * 20 19 18 23 23 N 1.31519 * 119.99300 * 0.26791 * 22 20 19 24 24 Si 1.86793 * 120.00225 * 180.27467 * 22 20 19 25 25 H 1.48496 * 109.47610 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47140 * 119.99994 * 24 22 20 27 27 H 1.48510 * 109.47002 * 239.99360 * 24 22 20 28 28 H 1.08998 * 109.47626 * 270.01975 * 1 2 3 29 29 H 1.09004 * 109.47069 * 30.02502 * 1 2 3 30 30 H 1.09002 * 109.46841 * 150.01806 * 1 2 3 31 31 H 1.08001 * 120.36315 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.30631 * 257.22641 * 8 6 5 33 33 H 1.09004 * 109.14335 * 137.72197 * 8 6 5 34 34 H 1.09004 * 109.63323 * 189.28953 * 9 8 6 35 35 H 1.08998 * 109.79987 * 68.78856 * 9 8 6 36 36 H 1.09004 * 109.63645 * 310.14324 * 10 9 8 37 37 H 1.09001 * 109.81140 * 189.62754 * 10 9 8 38 38 H 0.97000 * 120.00400 * 304.47416 * 13 11 5 39 39 H 1.08997 * 109.47220 * 59.99927 * 17 14 13 40 40 H 1.08998 * 109.47232 * 299.99641 * 17 14 13 41 41 H 1.08997 * 109.47560 * 59.99865 * 18 17 14 42 42 H 1.08999 * 109.47243 * 299.99441 * 18 17 14 43 43 H 1.08997 * 109.47214 * 59.99471 * 19 18 17 44 44 H 1.08999 * 109.46509 * 299.99709 * 19 18 17 45 45 H 0.97007 * 119.99411 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1493 1.1511 0.0000 4 6 3.4707 1.1852 0.0022 5 6 4.1817 -0.0095 0.0040 6 6 3.4766 -1.1932 0.0010 7 7 2.1484 -1.1492 0.0005 8 6 4.1510 -2.5380 -0.0032 9 6 5.6109 -2.4043 0.4278 10 6 6.2678 -1.3036 -0.4134 11 6 5.6841 0.0436 0.0111 12 1 6.0286 0.2849 1.0166 13 7 6.1365 1.0819 -0.9182 14 16 7.1315 2.2936 -0.3852 15 8 6.4788 2.8000 0.7710 16 8 7.3326 3.1108 -1.5301 17 6 8.6700 1.4478 0.0714 18 6 9.6822 2.4732 0.5862 19 6 10.9801 1.7600 0.9707 20 6 11.9772 2.7700 1.4772 21 1 11.7119 3.8161 1.5201 22 6 13.2264 2.3581 1.8906 23 7 13.5495 1.0843 1.8380 24 14 14.4597 3.6091 2.5256 25 1 13.8558 4.9650 2.4833 26 1 14.8286 3.2744 3.9245 27 1 15.6755 3.5823 1.6731 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 3.9925 2.1308 0.0026 32 1 4.1088 -2.9592 -1.0076 33 1 3.6305 -3.2010 0.6879 34 1 6.1293 -3.3491 0.2636 35 1 5.6614 -2.1377 1.4835 36 1 6.0601 -1.4765 -1.4694 37 1 7.3451 -1.3048 -0.2470 38 1 5.8531 1.0597 -1.8456 39 1 9.0787 0.9403 -0.8024 40 1 8.4645 0.7167 0.8532 41 1 9.2732 2.9804 1.4600 42 1 9.8879 3.2047 -0.1953 43 1 11.3888 1.2531 0.0966 44 1 10.7747 1.0283 1.7521 45 1 14.4282 0.7944 2.1292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734848590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:03 Heat of formation + Delta-G solvation = -52.390910 kcal Electronic energy + Delta-G solvation = -27271.373459 eV Core-core repulsion = 23414.944705 eV Total energy + Delta-G solvation = -3856.428755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71418 -38.20777 -36.98959 -35.89802 -35.27103 -34.74224 -33.23023 -32.58216 -32.23182 -29.39243 -28.39883 -27.85747 -24.92152 -23.80399 -23.24307 -22.93185 -20.79572 -20.35589 -19.35931 -18.11255 -17.74051 -17.15505 -16.56463 -16.15005 -15.96318 -15.71579 -15.29628 -15.12542 -14.51666 -14.29926 -14.20193 -14.08224 -13.86665 -13.41877 -13.21210 -12.72440 -12.67801 -12.40867 -12.35071 -12.34440 -12.06000 -11.93872 -11.88334 -11.84547 -11.75923 -11.47801 -11.29602 -10.96990 -10.90960 -10.82457 -10.66609 -10.47233 -10.03177 -10.00900 -9.49916 -9.43498 -9.32723 -9.13176 -8.44942 -6.09879 -4.12786 0.28348 0.60580 0.80329 2.66755 3.26816 3.34645 3.39417 3.41446 3.54943 3.80109 3.82575 4.11300 4.17467 4.21297 4.38104 4.39429 4.53972 4.62391 4.75759 4.88771 4.99683 5.03669 5.07644 5.11568 5.18875 5.22431 5.26832 5.28421 5.45051 5.49114 5.57333 5.59097 5.70379 5.75370 5.80962 5.91563 6.18312 6.19686 6.37530 6.69392 6.75645 6.81165 7.51972 7.61327 7.84281 7.88180 8.28419 8.93613 9.52262 11.01325 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020916 B = 0.002496 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.390540 B =11214.398483 C =11978.766824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.316 3.684 3 N -0.522 5.522 4 C 0.175 3.825 5 C -0.203 4.203 6 C 0.194 3.806 7 N -0.525 5.525 8 C -0.073 4.073 9 C -0.120 4.120 10 C -0.138 4.138 11 C 0.204 3.796 12 H 0.108 0.892 13 N -1.120 6.120 14 S 2.592 3.408 15 O -0.959 6.959 16 O -0.958 6.958 17 C -0.606 4.606 18 C -0.106 4.106 19 C 0.031 3.969 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.894 3.106 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.417 0.583 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.411 -9.320 -5.540 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 N -0.237 5.237 4 C 0.008 3.992 5 C -0.209 4.209 6 C 0.049 3.951 7 N -0.240 5.240 8 C -0.111 4.111 9 C -0.158 4.158 10 C -0.177 4.177 11 C 0.095 3.905 12 H 0.126 0.874 13 N -0.876 5.876 14 S 2.689 3.311 15 O -0.949 6.949 16 O -0.949 6.949 17 C -0.739 4.739 18 C -0.146 4.146 19 C -0.007 4.007 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.188 0.812 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.251 0.749 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.493 -8.488 -5.291 25.533 hybrid contribution 1.935 0.039 0.015 1.935 sum -21.558 -8.449 -5.276 23.748 Atomic orbital electron populations 1.20561 0.85682 1.04109 1.03908 1.23279 0.98251 0.83503 0.90100 1.68344 1.09843 1.30373 1.15102 1.23389 0.89278 0.98674 0.87877 1.21290 0.98138 0.95026 1.06458 1.21352 0.89132 0.95307 0.89296 1.68256 1.09201 1.30629 1.15886 1.20472 0.95202 0.91627 1.03799 1.21600 0.93926 0.99701 1.00609 1.22120 1.01427 0.92954 1.01233 1.19361 0.88761 0.88632 0.93736 0.87445 1.55971 1.66240 1.44799 1.20572 1.05599 0.76690 0.74291 0.74520 1.93591 1.72542 1.77046 1.51726 1.93595 1.86404 1.64882 1.49984 1.30563 1.18395 1.13143 1.11768 1.21518 0.96871 0.95787 1.00411 1.19063 0.89082 0.95671 0.96926 1.21285 0.98223 0.94128 1.42793 0.92313 1.25022 0.98385 0.95319 0.95680 1.69967 1.21229 1.14425 1.47777 0.86499 0.81144 0.81642 0.78535 1.19596 1.20928 1.20935 0.89593 0.89590 0.89688 0.81218 0.88942 0.88937 0.89660 0.90713 0.90346 0.89465 0.74933 0.85030 0.85417 0.91502 0.91529 0.96090 0.96088 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.32 36.01 0.37 -0.25 16 2 C 0.32 3.53 7.64 -157.34 -1.20 2.33 16 3 N -0.52 -6.54 10.34 -10.68 -0.11 -6.65 16 4 C 0.18 2.10 10.52 -17.11 -0.18 1.92 16 5 C -0.20 -2.10 5.54 -104.68 -0.58 -2.68 16 6 C 0.19 1.92 6.62 -82.43 -0.55 1.38 16 7 N -0.52 -5.82 10.22 -7.18 -0.07 -5.90 16 8 C -0.07 -0.50 5.95 -28.11 -0.17 -0.66 16 9 C -0.12 -0.71 5.97 -26.67 -0.16 -0.87 16 10 C -0.14 -0.93 5.57 -26.65 -0.15 -1.08 16 11 C 0.20 1.81 2.71 -69.34 -0.19 1.63 16 12 H 0.11 0.95 7.58 -51.93 -0.39 0.56 16 13 N -1.12 -10.62 4.48 -6.11 -0.03 -10.65 16 14 S 2.59 34.49 5.34 -107.50 -0.57 33.91 16 15 O -0.96 -15.30 17.42 -57.54 -1.00 -16.30 16 16 O -0.96 -15.79 18.08 -57.54 -1.04 -16.83 16 17 C -0.61 -8.40 6.07 37.16 0.23 -8.17 16 18 C -0.11 -2.04 5.16 -26.73 -0.14 -2.18 16 19 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 20 C -0.53 -14.49 9.11 -34.44 -0.31 -14.80 16 21 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 24 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.17 2.03 7.59 -52.49 -0.40 1.63 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 36 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.42 3.29 8.92 -34.47 -0.31 2.98 16 39 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.13 1.50 8.14 -51.92 -0.42 1.08 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -35.76 383.83 -11.57 -47.33 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.98 Total: -0.34 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -3.26 Total: -21.32 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.53 Total: -48.50 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -2.04 Total: -33.13 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 34.49 SS G_CDS: -0.57 Total: 33.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.76 -11.57 -47.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734848590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.061 kcal (2) G-P(sol) polarization free energy of solvation -35.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds