Wall clock time and date at job start Tue Mar 31 2020 22:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31815 * 119.16095 * 2 1 4 4 C 1.32186 * 120.63858 * 179.88782 * 3 2 1 5 5 C 1.39024 * 119.27763 * 0.02562 * 4 3 2 6 6 C 1.37774 * 118.46200 * 0.11677 * 5 4 3 7 7 N 1.31602 * 119.16603 * 179.97438 * 2 1 3 8 8 C 1.50445 * 122.58412 * 179.74042 * 6 5 4 9 9 C 1.52809 * 110.44702 * 17.52826 * 8 6 5 10 10 C 1.53317 * 108.50608 * 308.98929 * 9 8 6 11 11 C 1.50338 * 118.73009 * 180.19775 * 5 4 3 12 12 H 1.08991 * 109.15034 * 77.08939 * 11 5 4 13 13 N 1.46500 * 109.30724 * 317.57729 * 11 5 4 14 14 S 1.65605 * 119.99737 * 124.46776 * 13 11 5 15 15 O 1.42104 * 104.27610 * 309.04029 * 14 13 11 16 16 O 1.42094 * 104.27521 * 181.18353 * 14 13 11 17 17 C 1.81403 * 104.44619 * 65.11167 * 14 13 11 18 18 C 1.53000 * 109.46708 * 180.02562 * 17 14 13 19 19 C 1.53007 * 109.47018 * 180.02562 * 18 17 14 20 20 C 1.50690 * 109.47178 * 179.97438 * 19 18 17 21 21 H 1.08008 * 120.00013 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00311 * 179.72625 * 20 19 18 23 23 N 1.31519 * 119.99300 * 0.26791 * 22 20 19 24 24 Si 1.86793 * 120.00225 * 180.27467 * 22 20 19 25 25 H 1.48496 * 109.47610 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47140 * 119.99994 * 24 22 20 27 27 H 1.48510 * 109.47002 * 239.99360 * 24 22 20 28 28 H 1.08998 * 109.47626 * 270.01975 * 1 2 3 29 29 H 1.09004 * 109.47069 * 30.02502 * 1 2 3 30 30 H 1.09002 * 109.46841 * 150.01806 * 1 2 3 31 31 H 1.08001 * 120.36315 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.30631 * 257.22641 * 8 6 5 33 33 H 1.09004 * 109.14335 * 137.72197 * 8 6 5 34 34 H 1.09004 * 109.63323 * 189.28953 * 9 8 6 35 35 H 1.08998 * 109.79987 * 68.78856 * 9 8 6 36 36 H 1.09004 * 109.63645 * 310.14324 * 10 9 8 37 37 H 1.09001 * 109.81140 * 189.62754 * 10 9 8 38 38 H 0.97000 * 120.00400 * 304.47416 * 13 11 5 39 39 H 1.08997 * 109.47220 * 59.99927 * 17 14 13 40 40 H 1.08998 * 109.47232 * 299.99641 * 17 14 13 41 41 H 1.08997 * 109.47560 * 59.99865 * 18 17 14 42 42 H 1.08999 * 109.47243 * 299.99441 * 18 17 14 43 43 H 1.08997 * 109.47214 * 59.99471 * 19 18 17 44 44 H 1.08999 * 109.46509 * 299.99709 * 19 18 17 45 45 H 0.97007 * 119.99411 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1493 1.1511 0.0000 4 6 3.4707 1.1852 0.0022 5 6 4.1817 -0.0095 0.0040 6 6 3.4766 -1.1932 0.0010 7 7 2.1484 -1.1492 0.0005 8 6 4.1510 -2.5380 -0.0032 9 6 5.6109 -2.4043 0.4278 10 6 6.2678 -1.3036 -0.4134 11 6 5.6841 0.0436 0.0111 12 1 6.0286 0.2849 1.0166 13 7 6.1365 1.0819 -0.9182 14 16 7.1315 2.2936 -0.3852 15 8 6.4788 2.8000 0.7710 16 8 7.3326 3.1108 -1.5301 17 6 8.6700 1.4478 0.0714 18 6 9.6822 2.4732 0.5862 19 6 10.9801 1.7600 0.9707 20 6 11.9772 2.7700 1.4772 21 1 11.7119 3.8161 1.5201 22 6 13.2264 2.3581 1.8906 23 7 13.5495 1.0843 1.8380 24 14 14.4597 3.6091 2.5256 25 1 13.8558 4.9650 2.4833 26 1 14.8286 3.2744 3.9245 27 1 15.6755 3.5823 1.6731 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 3.9925 2.1308 0.0026 32 1 4.1088 -2.9592 -1.0076 33 1 3.6305 -3.2010 0.6879 34 1 6.1293 -3.3491 0.2636 35 1 5.6614 -2.1377 1.4835 36 1 6.0601 -1.4765 -1.4694 37 1 7.3451 -1.3048 -0.2470 38 1 5.8531 1.0597 -1.8456 39 1 9.0787 0.9403 -0.8024 40 1 8.4645 0.7167 0.8532 41 1 9.2732 2.9804 1.4600 42 1 9.8879 3.2047 -0.1953 43 1 11.3888 1.2531 0.0966 44 1 10.7747 1.0283 1.7521 45 1 14.4282 0.7944 2.1292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734848590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:02 Heat of formation + Delta-G solvation = -77.552151 kcal Electronic energy + Delta-G solvation = -27272.464533 eV Core-core repulsion = 23414.944705 eV Total energy + Delta-G solvation = -3857.519828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48711 -38.92474 -38.17519 -37.10302 -36.45738 -36.02832 -34.15940 -34.02550 -33.22354 -30.11779 -29.66105 -28.97272 -25.68793 -25.59974 -23.91767 -23.66118 -22.42963 -21.02686 -20.39305 -18.89898 -18.81583 -18.58971 -17.92253 -17.18290 -16.96841 -16.63099 -16.48348 -16.29260 -15.94491 -15.55249 -14.83334 -14.74024 -14.58973 -14.48411 -14.14777 -14.05608 -13.83327 -13.51275 -13.35654 -13.24410 -13.18932 -13.17222 -13.00387 -12.95120 -12.77168 -12.62466 -12.51217 -12.45635 -12.14584 -12.03715 -11.73256 -11.49289 -11.38603 -11.34547 -11.13954 -10.66429 -10.56519 -10.29732 -10.09785 -8.22164 -6.32095 -0.81392 -0.21425 -0.01987 1.39581 1.41089 1.53509 1.69430 2.40213 2.60674 2.71480 2.88105 3.05591 3.11765 3.17593 3.39972 3.47161 3.62419 3.76073 3.91572 3.98204 4.02312 4.17974 4.24688 4.30099 4.41386 4.47291 4.57067 4.67280 4.68915 4.69287 4.88665 4.95432 4.96740 4.99969 5.02539 5.08860 5.18943 5.23099 5.42234 5.47046 5.47775 5.66086 5.81429 5.92422 5.99560 6.21605 6.83796 7.03017 7.37050 8.89245 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020916 B = 0.002496 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.390540 B =11214.398483 C =11978.766824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.302 3.698 3 N -0.546 5.546 4 C 0.155 3.845 5 C -0.204 4.204 6 C 0.191 3.809 7 N -0.535 5.535 8 C -0.070 4.070 9 C -0.116 4.116 10 C -0.137 4.137 11 C 0.199 3.801 12 H 0.108 0.892 13 N -1.104 6.104 14 S 2.621 3.379 15 O -0.986 6.986 16 O -0.990 6.990 17 C -0.605 4.605 18 C -0.108 4.108 19 C 0.032 3.968 20 C -0.551 4.551 21 H 0.058 0.942 22 C 0.004 3.996 23 N -0.928 5.928 24 Si 0.960 3.040 25 H -0.266 1.266 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.162 0.838 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.427 0.573 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.005 0.995 44 H 0.007 0.993 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.729 -10.523 -5.742 25.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 N -0.261 5.261 4 C -0.012 4.012 5 C -0.210 4.210 6 C 0.046 3.954 7 N -0.250 5.250 8 C -0.108 4.108 9 C -0.155 4.155 10 C -0.176 4.176 11 C 0.091 3.909 12 H 0.126 0.874 13 N -0.863 5.863 14 S 2.718 3.282 15 O -0.976 6.976 16 O -0.980 6.980 17 C -0.736 4.736 18 C -0.147 4.147 19 C -0.006 4.006 20 C -0.589 4.589 21 H 0.076 0.924 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.784 3.216 25 H -0.190 1.190 26 H -0.203 1.203 27 H -0.203 1.203 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.179 0.821 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.263 0.737 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.023 0.977 44 H 0.025 0.975 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.813 -9.679 -5.501 26.287 hybrid contribution 1.962 0.361 0.074 1.997 sum -21.851 -9.317 -5.427 24.367 Atomic orbital electron populations 1.20669 0.83495 1.04982 1.04831 1.23937 0.99738 0.83258 0.89603 1.68343 1.10227 1.31339 1.16186 1.23432 0.89621 0.99205 0.88924 1.21376 0.98714 0.94620 1.06286 1.21925 0.88980 0.96518 0.87981 1.68365 1.09832 1.30490 1.16329 1.20587 0.95493 0.89828 1.04850 1.21626 0.93309 1.00314 1.00247 1.22170 1.01873 0.91518 1.02081 1.19595 0.88072 0.89537 0.93687 0.87379 1.55531 1.65133 1.44331 1.21289 1.04513 0.76332 0.74090 0.73313 1.93558 1.73073 1.78020 1.52954 1.93549 1.86925 1.66469 1.51074 1.30504 1.17351 1.12388 1.13394 1.21321 0.96026 0.96729 1.00621 1.18957 0.91018 0.95055 0.95618 1.21774 0.99382 0.94849 1.42893 0.92388 1.25887 1.00409 0.97239 0.95929 1.70065 1.21912 1.16135 1.48660 0.85478 0.78660 0.79342 0.78079 1.18968 1.20259 1.20304 0.88513 0.89085 0.88396 0.82052 0.87479 0.88257 0.87550 0.90957 0.89238 0.88501 0.73684 0.82930 0.83049 0.91591 0.91790 0.97658 0.97487 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.32 71.24 0.74 -0.40 16 2 C 0.30 6.58 7.64 138.80 1.06 7.64 16 3 N -0.55 -13.76 10.34 -187.72 -1.94 -15.71 16 4 C 0.15 3.74 10.52 84.83 0.89 4.63 16 5 C -0.20 -4.01 5.54 -19.90 -0.11 -4.12 16 6 C 0.19 3.50 6.62 42.21 0.28 3.78 16 7 N -0.53 -11.28 10.22 -176.64 -1.80 -13.08 16 8 C -0.07 -0.77 5.95 29.70 0.18 -0.59 16 9 C -0.12 -1.02 5.97 30.64 0.18 -0.84 16 10 C -0.14 -1.45 5.57 30.65 0.17 -1.28 16 11 C 0.20 3.22 2.71 44.08 0.12 3.33 16 12 H 0.11 1.75 7.58 -2.39 -0.02 1.73 16 13 N -1.10 -19.43 4.48 -173.24 -0.78 -20.21 16 14 S 2.62 67.67 5.34 -56.49 -0.30 67.37 16 15 O -0.99 -31.24 17.42 -127.65 -2.22 -33.46 16 16 O -0.99 -32.15 18.08 -127.65 -2.31 -34.46 16 17 C -0.60 -15.91 6.07 71.98 0.44 -15.48 16 18 C -0.11 -4.12 5.16 30.60 0.16 -3.96 16 19 C 0.03 1.56 4.97 29.85 0.15 1.71 16 20 C -0.55 -30.58 9.11 25.60 0.23 -30.34 16 21 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 22 C 0.00 0.21 5.46 84.66 0.46 0.67 16 23 N -0.93 -54.25 13.29 21.45 0.28 -53.97 16 24 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.16 4.00 7.59 -2.91 -0.02 3.98 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16 36 H 0.09 0.78 8.10 -2.39 -0.02 0.76 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.43 6.12 8.92 -96.74 -0.86 5.25 16 39 H 0.15 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -77.40 383.83 -1.97 -79.36 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.13 Total: 13.85 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 4.95 Total: -35.25 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -4.24 Total: -102.96 kcal Atomic # 8 Polarization: -63.39 SS G_CDS: -4.53 Total: -67.92 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 67.67 SS G_CDS: -0.30 Total: 67.37 kcal Total: -77.40 -1.97 -79.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734848590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.810 kcal (2) G-P(sol) polarization free energy of solvation -77.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds