Wall clock time and date at job start Tue Mar 31 2020 23:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46648 * 2 1 4 4 S 1.70618 * 124.52430 * 269.99474 * 3 2 1 5 5 C 1.75831 * 91.56590 * 180.02562 * 4 3 2 6 6 C 1.46580 * 125.45574 * 179.97438 * 5 4 3 7 7 O 1.21702 * 119.99796 * 180.02562 * 6 5 4 8 8 N 1.34779 * 120.00116 * 0.02700 * 6 5 4 9 9 N 1.40102 * 119.99461 * 180.02562 * 8 6 5 10 10 C 1.34779 * 119.99461 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00241 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99831 * 179.97438 * 10 9 8 13 13 N 1.46899 * 109.47107 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00006 * 179.97438 * 13 12 10 15 15 H 1.09005 * 109.46991 * 35.00933 * 14 13 12 16 16 C 1.52996 * 109.47590 * 275.00416 * 14 13 12 17 17 C 1.50701 * 109.47179 * 155.00285 * 14 13 12 18 18 H 1.08000 * 119.99745 * 0.02562 * 17 14 13 19 19 C 1.37879 * 120.00237 * 180.02562 * 17 14 13 20 20 N 1.31510 * 120.00052 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 119.99835 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47327 * 60.00664 * 21 19 17 23 23 H 1.48502 * 109.46975 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47526 * 300.00193 * 21 19 17 25 25 C 1.36644 * 109.08149 * 359.76362 * 5 4 3 26 26 C 1.33817 * 124.52629 * 90.00656 * 3 2 1 27 27 C 1.50703 * 122.44620 * 359.96913 * 26 3 2 28 28 H 1.08998 * 109.47211 * 299.99976 * 1 2 3 29 29 H 1.08996 * 109.47548 * 60.00217 * 1 2 3 30 30 H 1.09006 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47211 * 240.00024 * 2 1 3 32 32 H 1.08996 * 109.47548 * 119.99783 * 2 1 3 33 33 H 0.96996 * 119.99998 * 359.97438 * 8 6 5 34 34 H 0.96996 * 120.00541 * 359.97438 * 9 8 6 35 35 H 1.08995 * 109.47367 * 300.00077 * 12 10 9 36 36 H 1.09008 * 109.47019 * 60.00389 * 12 10 9 37 37 H 1.00899 * 111.00551 * 303.95750 * 13 12 10 38 38 H 1.08993 * 109.47189 * 299.99963 * 16 14 13 39 39 H 1.09004 * 109.47197 * 60.00088 * 16 14 13 40 40 H 1.09002 * 109.47605 * 179.97438 * 16 14 13 41 41 H 0.97002 * 120.00168 * 179.97438 * 20 19 17 42 42 H 1.08003 * 123.35048 * 180.21630 * 25 5 4 43 43 H 1.09002 * 109.47152 * 90.00421 * 27 26 3 44 44 H 1.09001 * 109.46980 * 330.00522 * 27 26 3 45 45 H 1.09004 * 109.47113 * 210.00503 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3546 2.3325 -1.4057 5 6 2.8469 3.7233 -0.4491 6 6 3.3020 5.0081 -0.9884 7 8 3.6206 5.9068 -0.2322 8 7 3.3676 5.1941 -2.3217 9 7 3.8031 6.4220 -2.8370 10 6 3.8683 6.6081 -4.1702 11 8 3.5503 5.7127 -4.9239 12 6 4.3362 7.9291 -4.7246 13 7 4.3178 7.8781 -6.1926 14 6 4.7683 9.1519 -6.7692 15 1 5.5460 9.5817 -6.1377 16 6 3.5867 10.1200 -6.8534 17 6 5.3195 8.9108 -8.1509 18 1 5.3333 7.9113 -8.5599 19 6 5.8062 9.9661 -8.8929 20 7 5.7899 11.1830 -8.3946 21 14 6.4901 9.6670 -10.6052 22 1 5.4310 9.0816 -11.4660 23 1 6.9466 10.9544 -11.1878 24 1 7.6369 8.7271 -10.5232 25 6 2.7327 3.4161 0.8774 26 6 2.2851 2.1359 1.1025 27 6 2.0881 1.5803 2.4894 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.1140 4.4777 -2.9244 34 1 4.0571 7.1383 -2.2343 35 1 3.6737 8.7230 -4.3799 36 1 5.3514 8.1282 -4.3810 37 1 4.8741 7.1091 -6.5348 38 1 2.8091 9.6903 -7.4848 39 1 3.1880 10.2945 -5.8540 40 1 3.9211 11.0654 -7.2808 41 1 6.1326 11.9254 -8.9165 42 1 2.9733 4.1089 1.6702 43 1 3.0094 1.1035 2.8240 44 1 1.2831 0.8455 2.4755 45 1 1.8294 2.3899 3.1718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878817888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:08 Heat of formation + Delta-G solvation = -15.783379 kcal Electronic energy + Delta-G solvation = -25659.562255 eV Core-core repulsion = 21804.720922 eV Total energy + Delta-G solvation = -3854.841333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48980 -39.38460 -38.60753 -35.87939 -35.21810 -34.28947 -32.64146 -31.87539 -30.55468 -29.03601 -27.87934 -25.94666 -25.18044 -24.40276 -22.87571 -21.65388 -20.93659 -19.81070 -19.06282 -18.60261 -17.78185 -17.13587 -16.41566 -15.94723 -15.85881 -15.33615 -15.20659 -14.81779 -14.68447 -14.58434 -14.23524 -14.01663 -13.63690 -13.52471 -13.26953 -13.08445 -12.67412 -12.62475 -12.56404 -12.20192 -11.95989 -11.82813 -11.63189 -11.36357 -11.30096 -11.18291 -10.93519 -10.79561 -10.61789 -10.42080 -10.17680 -10.11564 -9.77978 -9.13800 -8.89175 -8.83860 -8.50572 -8.44698 -7.39040 -6.05495 -4.11760 0.06684 1.01026 1.42971 1.66106 1.88617 2.58248 2.91750 3.31610 3.35641 3.39199 3.81864 4.15419 4.35728 4.41690 4.48452 4.67969 4.74379 4.87633 4.93495 4.99718 5.19294 5.22627 5.22913 5.30864 5.32942 5.38367 5.45666 5.50414 5.68026 5.74027 5.78769 5.87795 6.01947 6.48583 6.53955 6.79663 7.07024 7.13824 7.34459 7.44806 7.68440 7.75368 7.83103 8.21820 8.28989 8.31773 8.57849 8.96989 9.54147 11.00916 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.001770 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.228105 B =15813.406394 C =16466.501290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.189 4.189 4 S 0.208 5.792 5 C -0.266 4.266 6 C 0.592 3.408 7 O -0.531 6.531 8 N -0.518 5.518 9 N -0.529 5.529 10 C 0.516 3.484 11 O -0.522 6.522 12 C 0.056 3.944 13 N -0.671 5.671 14 C 0.212 3.788 15 H 0.005 0.995 16 C -0.126 4.126 17 C -0.519 4.519 18 H 0.061 0.939 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.037 4.037 26 C -0.123 4.123 27 C -0.094 4.094 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.428 0.572 34 H 0.432 0.568 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.342 0.658 38 H 0.034 0.966 39 H 0.004 0.996 40 H 0.083 0.917 41 H 0.262 0.738 42 H 0.155 0.845 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 -21.084 22.239 31.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.309 4.309 4 S 0.478 5.522 5 C -0.388 4.388 6 C 0.379 3.621 7 O -0.409 6.409 8 N -0.264 5.264 9 N -0.281 5.281 10 C 0.303 3.697 11 O -0.394 6.394 12 C -0.079 4.079 13 N -0.305 5.305 14 C 0.105 3.895 15 H 0.022 0.978 16 C -0.185 4.185 17 C -0.558 4.558 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.071 4.071 26 C -0.136 4.136 27 C -0.153 4.153 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.270 0.730 34 H 0.274 0.726 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.161 0.839 38 H 0.053 0.947 39 H 0.023 0.977 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.173 0.827 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.110 -21.002 20.469 30.710 hybrid contribution 1.395 0.196 0.819 1.629 sum -7.716 -20.806 21.288 30.751 Atomic orbital electron populations 1.21802 0.93882 1.02318 1.02733 1.20172 0.96500 0.89211 1.03700 1.24133 1.07331 1.02176 0.97228 1.83214 1.59665 1.02145 1.07136 1.24079 1.17748 0.98694 0.98249 1.16887 0.78363 0.86484 0.80410 1.90855 1.50005 1.42583 1.57424 1.44581 1.67304 1.08550 1.05978 1.45239 1.69226 1.06498 1.07167 1.21604 0.77426 0.91477 0.79217 1.90702 1.47742 1.43887 1.57090 1.21740 1.00606 0.91825 0.93714 1.60529 1.61013 1.08618 1.00309 1.19184 0.92131 0.84130 0.94024 0.97763 1.21746 0.97879 1.01990 0.96855 1.21187 1.40049 0.94385 1.00151 0.92051 1.24909 0.95677 0.95029 0.98354 1.69877 1.46284 0.99085 1.37608 0.86539 0.79338 0.77292 0.84105 1.20138 1.21305 1.20307 1.20600 0.95873 0.95750 0.94898 1.18657 1.04480 0.93791 0.96671 1.20525 1.02217 1.01147 0.91361 0.92115 0.92229 0.91727 0.90441 0.89581 0.72981 0.72572 0.88073 0.92436 0.83903 0.94721 0.97675 0.89884 0.92803 0.82740 0.91098 0.91311 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.89 37.16 0.37 -0.29 16 2 C -0.06 -0.28 5.72 -27.88 -0.16 -0.44 16 3 C -0.19 -1.35 5.53 -35.86 -0.20 -1.55 16 4 S 0.21 1.71 22.10 -107.50 -2.38 -0.67 16 5 C -0.27 -2.77 6.45 -36.80 -0.24 -3.01 16 6 C 0.59 7.60 7.90 -12.90 -0.10 7.50 16 7 O -0.53 -8.09 16.68 5.19 0.09 -8.00 16 8 N -0.52 -6.69 6.26 30.24 0.19 -6.50 16 9 N -0.53 -7.20 6.26 31.22 0.20 -7.00 16 10 C 0.52 8.34 7.98 -10.98 -0.09 8.25 16 11 O -0.52 -10.02 16.04 5.55 0.09 -9.93 16 12 C 0.06 0.94 5.96 -4.98 -0.03 0.91 16 13 N -0.67 -14.44 5.93 -109.22 -0.65 -15.08 16 14 C 0.21 5.27 2.60 -68.87 -0.18 5.09 16 15 H 0.00 0.12 7.80 -51.93 -0.40 -0.28 16 16 C -0.13 -3.08 9.19 37.16 0.34 -2.74 16 17 C -0.52 -14.16 8.59 -34.44 -0.30 -14.46 16 18 H 0.06 1.67 7.62 -52.49 -0.40 1.27 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 20 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 21 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.04 -0.34 9.79 -40.44 -0.40 -0.74 16 26 C -0.12 -0.92 5.78 -106.45 -0.62 -1.53 16 27 C -0.09 -0.46 9.56 36.01 0.34 -0.12 16 28 H 0.06 0.27 7.80 -51.93 -0.41 -0.13 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.33 7.25 -51.93 -0.38 -0.05 16 33 H 0.43 5.24 7.11 -182.60 -1.30 3.95 16 34 H 0.43 5.20 8.00 -182.60 -1.46 3.74 16 35 H 0.10 1.60 7.44 -51.93 -0.39 1.21 16 36 H 0.06 0.90 8.06 -51.92 -0.42 0.48 16 37 H 0.34 7.51 7.93 -39.29 -0.31 7.20 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 40 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.27 6.86 -51.93 -0.36 -0.09 16 45 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -32.29 390.30 -10.93 -43.22 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -8.61 Total: 7.79 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.34 Total: -1.51 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.37 Total: -52.99 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.18 Total: -17.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.38 Total: -0.67 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.29 -10.93 -43.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.441 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds