Wall clock time and date at job start Tue Mar 31 2020 22:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00354 * 2 1 4 4 C 1.50703 * 109.47333 * 179.97438 * 3 2 1 5 5 N 1.29436 * 124.79784 * 89.69768 * 4 3 2 6 6 C 1.30945 * 117.35659 * 179.83747 * 5 4 3 7 7 C 1.50696 * 122.89863 * 180.21242 * 6 5 4 8 8 C 1.35660 * 114.19323 * 0.45210 * 6 5 4 9 9 C 1.46688 * 126.12780 * 179.75018 * 8 6 5 10 10 O 1.21685 * 120.00011 * 354.20970 * 9 8 6 11 11 N 1.34777 * 119.99757 * 174.21220 * 9 8 6 12 12 C 1.47022 * 125.64856 * 4.78198 * 11 9 8 13 13 C 1.54335 * 107.26623 * 178.85136 * 12 11 9 14 14 H 1.08999 * 110.51705 * 96.45033 * 13 12 11 15 15 C 1.52997 * 111.00197 * 219.60464 * 13 12 11 16 16 C 1.55158 * 103.01743 * 338.13811 * 13 12 11 17 17 H 1.08998 * 111.04070 * 277.22017 * 16 13 12 18 18 N 1.46502 * 111.00395 * 153.38172 * 16 13 12 19 19 C 1.36934 * 120.00123 * 161.35006 * 18 16 13 20 20 H 1.07995 * 120.00023 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99956 * 180.02562 * 19 18 16 22 22 N 1.31622 * 120.00275 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00126 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46973 * 59.99901 * 23 21 19 25 25 H 1.48497 * 109.47161 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46746 * 299.99871 * 23 21 19 27 27 C 1.47419 * 125.64884 * 185.09046 * 11 9 8 28 28 S 1.70945 * 124.80851 * 270.00640 * 4 3 2 29 29 H 1.09000 * 109.46656 * 59.99694 * 1 2 3 30 30 H 1.08998 * 109.47615 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46882 * 300.00311 * 1 2 3 32 32 H 1.09003 * 109.46960 * 60.00468 * 3 2 1 33 33 H 1.08997 * 109.47573 * 300.00256 * 3 2 1 34 34 H 1.09006 * 109.47274 * 270.25060 * 7 6 5 35 35 H 1.08996 * 109.47388 * 30.25526 * 7 6 5 36 36 H 1.09000 * 109.46922 * 150.25720 * 7 6 5 37 37 H 1.09002 * 109.88320 * 298.39337 * 12 11 9 38 38 H 1.09000 * 109.88307 * 59.56153 * 12 11 9 39 39 H 1.08997 * 109.47268 * 173.78083 * 15 13 12 40 40 H 1.09003 * 109.46740 * 293.77587 * 15 13 12 41 41 H 1.09003 * 109.47472 * 53.77438 * 15 13 12 42 42 H 0.97006 * 119.99819 * 341.34901 * 18 16 13 43 43 H 0.96996 * 120.00182 * 179.97438 * 22 21 19 44 44 H 1.09005 * 110.36649 * 322.92801 * 27 11 9 45 45 H 1.09005 * 110.36720 * 85.24769 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2490 1.1222 -1.0619 6 6 5.5436 1.0239 -0.8918 7 6 6.5164 0.9457 -2.0400 8 6 5.9329 0.9933 0.4074 9 6 7.3121 0.8831 0.8946 10 8 8.2228 0.7032 0.1078 11 7 7.5706 0.9811 2.2137 12 6 6.5630 1.0982 3.2779 13 6 7.3203 1.1530 4.6217 14 1 7.4543 2.1859 4.9428 15 6 6.5901 0.3445 5.6959 16 6 8.6868 0.5028 4.2795 17 1 8.6234 -0.5847 4.3177 18 7 9.7406 0.9961 5.1697 19 6 10.9096 0.2952 5.3010 20 1 11.0546 -0.6215 4.7488 21 6 11.9079 0.7623 6.1449 22 7 11.7311 1.8793 6.8185 23 14 13.5029 -0.1934 6.3237 24 1 14.1699 -0.2951 5.0008 25 1 14.3977 0.5106 7.2770 26 1 13.2087 -1.5560 6.8358 27 6 8.9107 0.9952 2.8279 28 16 4.4848 1.1094 1.4046 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6887 1.8464 -0.8899 34 1 6.6693 -0.0977 -2.3164 35 1 6.1159 1.4926 -2.8935 36 1 7.4679 1.3853 -1.7407 37 1 5.9824 2.0103 3.1400 38 1 5.9037 0.2304 3.2613 39 1 7.1986 0.3079 6.5995 40 1 5.6345 0.8183 5.9204 41 1 6.4169 -0.6687 5.3332 42 1 9.6103 1.8193 5.6660 43 1 12.4284 2.2055 7.4084 44 1 9.5788 0.3175 2.2962 45 1 9.3171 2.0066 2.8287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939633900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:08 Heat of formation + Delta-G solvation = -17.018538 kcal Electronic energy + Delta-G solvation = -27063.818336 eV Core-core repulsion = 23208.923442 eV Total energy + Delta-G solvation = -3854.894894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.50942 -39.63790 -38.24815 -37.50278 -34.25000 -32.63750 -32.47984 -30.81167 -29.12467 -29.03759 -27.19264 -26.49039 -26.23684 -24.08624 -23.02953 -22.04034 -20.94475 -20.03179 -18.69055 -18.30409 -17.26121 -17.04798 -16.71265 -16.33824 -16.02856 -15.86183 -15.23563 -14.82722 -14.38889 -14.15023 -14.04456 -13.72154 -13.34917 -13.16233 -13.08350 -12.95168 -12.81323 -12.72270 -12.57744 -12.39875 -11.94836 -11.86320 -11.72840 -11.50959 -11.16393 -11.09788 -10.84580 -10.71539 -10.33108 -10.29858 -10.05420 -9.93986 -9.84280 -9.66399 -9.62839 -9.08299 -9.00659 -8.41017 -7.11754 -5.86799 -3.17736 0.00898 0.97109 1.39646 2.21361 3.00986 3.12546 3.30647 3.40798 3.45543 3.46458 3.90930 4.45154 4.49105 4.51625 4.70290 4.77889 4.84632 4.89550 4.92468 4.97359 4.98686 5.18964 5.23419 5.40175 5.46204 5.59244 5.61233 5.65788 5.74256 5.76612 5.80159 5.92608 6.10643 6.18626 6.23526 6.31681 6.39690 6.51318 6.52270 6.54298 6.82985 7.41269 7.60358 7.63119 8.15854 8.30549 9.42820 9.94625 10.29838 11.34948 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.002606 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.012610 B =10740.166993 C =11785.190933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.027 3.973 5 N -0.460 5.460 6 C 0.140 3.860 7 C -0.085 4.085 8 C -0.284 4.284 9 C 0.604 3.396 10 O -0.525 6.525 11 N -0.607 5.607 12 C 0.094 3.906 13 C -0.107 4.107 14 H 0.088 0.912 15 C -0.136 4.136 16 C 0.177 3.823 17 H 0.067 0.933 18 N -0.709 5.709 19 C -0.249 4.249 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.083 3.917 28 S 0.209 5.791 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.076 0.924 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.552 0.215 -10.831 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.247 4.247 5 N -0.177 5.177 6 C 0.002 3.998 7 C -0.144 4.144 8 C -0.408 4.408 9 C 0.391 3.609 10 O -0.403 6.403 11 N -0.340 5.340 12 C -0.030 4.030 13 C -0.127 4.127 14 H 0.106 0.894 15 C -0.194 4.194 16 C 0.065 3.935 17 H 0.085 0.915 18 N -0.348 5.348 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.739 3.261 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 C -0.042 4.042 28 S 0.467 5.533 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.340 -0.126 -10.665 25.662 hybrid contribution 1.056 0.042 -0.470 1.157 sum -22.285 -0.084 -11.135 24.912 Atomic orbital electron populations 1.22818 0.79901 1.03405 1.00371 1.87972 1.20376 1.26199 1.95525 1.20803 0.84511 0.86139 1.02558 1.27051 1.00649 1.03616 0.93405 1.66049 1.04451 1.15358 1.31799 1.20622 0.89794 0.95658 0.93729 1.20617 0.96922 1.03575 0.93323 1.25663 0.98301 1.19556 0.97291 1.16290 0.85696 0.77626 0.81304 1.90798 1.45208 1.50177 1.54167 1.48362 1.10062 1.71260 1.04312 1.22270 0.91464 1.01122 0.88174 1.22433 0.96250 1.01595 0.92386 0.89362 1.21694 0.99532 0.99098 0.99044 1.21386 0.87175 0.97050 0.87900 0.91545 1.42264 1.14422 1.28554 1.49601 1.19190 0.92483 1.04552 1.21714 0.90983 1.24760 0.98707 0.97541 0.99371 1.69644 1.34419 1.22031 1.31617 0.86252 0.83281 0.79042 0.77512 1.21069 1.21646 1.21129 1.23529 0.81842 1.02368 0.96443 1.84157 0.95731 1.64149 1.09255 0.93588 0.89056 0.93584 0.90668 0.90006 0.90026 0.90869 0.88334 0.91357 0.91075 0.90996 0.93020 0.92755 0.77808 0.93278 0.90551 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.62 10.69 -35.23 -0.38 -4.00 16 3 C 0.14 1.15 6.51 36.01 0.23 1.39 16 4 C 0.03 0.31 7.01 -13.29 -0.09 0.22 16 5 N -0.46 -6.21 10.50 -7.70 -0.08 -6.30 16 6 C 0.14 1.98 6.79 -83.89 -0.57 1.41 16 7 C -0.09 -1.08 9.63 36.00 0.35 -0.74 16 8 C -0.28 -4.09 6.39 -37.09 -0.24 -4.33 16 9 C 0.60 10.17 7.79 -12.85 -0.10 10.07 16 10 O -0.52 -10.15 14.58 5.20 0.08 -10.08 16 11 N -0.61 -9.79 3.33 -172.05 -0.57 -10.37 16 12 C 0.09 1.24 4.80 -3.06 -0.01 1.22 16 13 C -0.11 -1.55 3.15 -88.78 -0.28 -1.83 16 14 H 0.09 1.30 8.00 -51.93 -0.42 0.89 16 15 C -0.14 -1.73 9.17 37.16 0.34 -1.39 16 16 C 0.18 3.29 3.13 -65.78 -0.21 3.09 16 17 H 0.07 1.27 8.04 -51.93 -0.42 0.86 16 18 N -0.71 -16.50 5.28 -51.35 -0.27 -16.77 16 19 C -0.25 -6.57 9.98 -15.06 -0.15 -6.72 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -26.94 13.06 55.49 0.72 -26.21 16 23 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 C 0.08 1.54 6.62 -2.53 -0.02 1.52 16 28 S 0.21 2.29 18.69 -107.50 -2.01 0.28 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.38 6.16 -51.93 -0.32 1.06 16 37 H 0.07 0.78 6.89 -51.93 -0.36 0.43 16 38 H 0.07 0.84 6.67 -51.93 -0.35 0.50 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 42 H 0.39 9.53 7.71 -40.82 -0.31 9.21 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.08 1.53 7.99 -51.93 -0.41 1.12 16 45 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -32.04 381.58 -8.29 -40.33 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.78 Total: 5.61 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 0.27 Total: 4.90 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.20 Total: -59.64 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.30 Total: -14.07 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.01 Total: 0.28 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.04 -8.29 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939633900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.310 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds