Wall clock time and date at job start Tue Mar 31 2020 22:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00354 * 2 1 4 4 C 1.50703 * 109.47333 * 179.97438 * 3 2 1 5 5 N 1.29436 * 124.79784 * 89.69768 * 4 3 2 6 6 C 1.30945 * 117.35659 * 179.83747 * 5 4 3 7 7 C 1.50696 * 122.89863 * 180.21242 * 6 5 4 8 8 C 1.35660 * 114.19323 * 0.45210 * 6 5 4 9 9 C 1.46688 * 126.12780 * 179.75018 * 8 6 5 10 10 O 1.21685 * 120.00011 * 354.20970 * 9 8 6 11 11 N 1.34777 * 119.99757 * 174.21220 * 9 8 6 12 12 C 1.47022 * 125.64856 * 4.78198 * 11 9 8 13 13 C 1.54335 * 107.26623 * 178.85136 * 12 11 9 14 14 H 1.08999 * 110.51705 * 96.45033 * 13 12 11 15 15 C 1.52997 * 111.00197 * 219.60464 * 13 12 11 16 16 C 1.55158 * 103.01743 * 338.13811 * 13 12 11 17 17 H 1.08998 * 111.04070 * 277.22017 * 16 13 12 18 18 N 1.46502 * 111.00395 * 153.38172 * 16 13 12 19 19 C 1.36934 * 120.00123 * 161.35006 * 18 16 13 20 20 H 1.07995 * 120.00023 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99956 * 180.02562 * 19 18 16 22 22 N 1.31622 * 120.00275 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00126 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46973 * 59.99901 * 23 21 19 25 25 H 1.48497 * 109.47161 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46746 * 299.99871 * 23 21 19 27 27 C 1.47419 * 125.64884 * 185.09046 * 11 9 8 28 28 S 1.70945 * 124.80851 * 270.00640 * 4 3 2 29 29 H 1.09000 * 109.46656 * 59.99694 * 1 2 3 30 30 H 1.08998 * 109.47615 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46882 * 300.00311 * 1 2 3 32 32 H 1.09003 * 109.46960 * 60.00468 * 3 2 1 33 33 H 1.08997 * 109.47573 * 300.00256 * 3 2 1 34 34 H 1.09006 * 109.47274 * 270.25060 * 7 6 5 35 35 H 1.08996 * 109.47388 * 30.25526 * 7 6 5 36 36 H 1.09000 * 109.46922 * 150.25720 * 7 6 5 37 37 H 1.09002 * 109.88320 * 298.39337 * 12 11 9 38 38 H 1.09000 * 109.88307 * 59.56153 * 12 11 9 39 39 H 1.08997 * 109.47268 * 173.78083 * 15 13 12 40 40 H 1.09003 * 109.46740 * 293.77587 * 15 13 12 41 41 H 1.09003 * 109.47472 * 53.77438 * 15 13 12 42 42 H 0.97006 * 119.99819 * 341.34901 * 18 16 13 43 43 H 0.96996 * 120.00182 * 179.97438 * 22 21 19 44 44 H 1.09005 * 110.36649 * 322.92801 * 27 11 9 45 45 H 1.09005 * 110.36720 * 85.24769 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2490 1.1222 -1.0619 6 6 5.5436 1.0239 -0.8918 7 6 6.5164 0.9457 -2.0400 8 6 5.9329 0.9933 0.4074 9 6 7.3121 0.8831 0.8946 10 8 8.2228 0.7032 0.1078 11 7 7.5706 0.9811 2.2137 12 6 6.5630 1.0982 3.2779 13 6 7.3203 1.1530 4.6217 14 1 7.4543 2.1859 4.9428 15 6 6.5901 0.3445 5.6959 16 6 8.6868 0.5028 4.2795 17 1 8.6234 -0.5847 4.3177 18 7 9.7406 0.9961 5.1697 19 6 10.9096 0.2952 5.3010 20 1 11.0546 -0.6215 4.7488 21 6 11.9079 0.7623 6.1449 22 7 11.7311 1.8793 6.8185 23 14 13.5029 -0.1934 6.3237 24 1 14.1699 -0.2951 5.0008 25 1 14.3977 0.5106 7.2770 26 1 13.2087 -1.5560 6.8358 27 6 8.9107 0.9952 2.8279 28 16 4.4848 1.1094 1.4046 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6887 1.8464 -0.8899 34 1 6.6693 -0.0977 -2.3164 35 1 6.1159 1.4926 -2.8935 36 1 7.4679 1.3853 -1.7407 37 1 5.9824 2.0103 3.1400 38 1 5.9037 0.2304 3.2613 39 1 7.1986 0.3079 6.5995 40 1 5.6345 0.8183 5.9204 41 1 6.4169 -0.6687 5.3332 42 1 9.6103 1.8193 5.6660 43 1 12.4284 2.2055 7.4084 44 1 9.5788 0.3175 2.2962 45 1 9.3171 2.0066 2.8287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939633900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:07 Heat of formation + Delta-G solvation = -39.429187 kcal Electronic energy + Delta-G solvation = -27064.790135 eV Core-core repulsion = 23208.923442 eV Total energy + Delta-G solvation = -3855.866692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62912 -40.80745 -39.05238 -38.66460 -36.01565 -33.99151 -33.53484 -32.50098 -30.40246 -29.81443 -28.59152 -27.39701 -26.94663 -25.92509 -23.89546 -23.43003 -22.13091 -21.45236 -19.88053 -19.33312 -19.05134 -17.86697 -17.76285 -17.51310 -17.01424 -16.56968 -16.50891 -16.12351 -15.77960 -15.42879 -15.32311 -15.03598 -14.72040 -14.56423 -14.32946 -14.07062 -13.90425 -13.61768 -13.46730 -13.26312 -13.17747 -13.06397 -12.91128 -12.84908 -12.49677 -12.34358 -12.28274 -12.24456 -12.03674 -11.77681 -11.47437 -11.23382 -10.97717 -10.82630 -10.67744 -10.62760 -10.11869 -9.65202 -9.07717 -7.97075 -5.26657 -0.97339 0.03789 0.44226 1.18726 1.47924 1.49871 1.55552 1.72988 1.93477 2.54808 2.59469 3.19325 3.28743 3.40936 3.44725 3.74515 3.76974 3.88920 4.05835 4.08710 4.17797 4.26013 4.33920 4.38088 4.46221 4.54792 4.57207 4.60904 4.62460 4.65652 4.81052 4.81527 4.87263 4.91692 5.00271 5.10175 5.15991 5.23631 5.32716 5.47687 5.52914 6.05773 6.24062 6.28759 6.49842 6.85883 7.32400 8.02351 8.27577 9.25050 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.002606 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.012610 B =10740.166993 C =11785.190933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.135 3.865 4 C 0.031 3.969 5 N -0.483 5.483 6 C 0.138 3.862 7 C -0.084 4.084 8 C -0.321 4.321 9 C 0.601 3.399 10 O -0.562 6.562 11 N -0.608 5.608 12 C 0.096 3.904 13 C -0.096 4.096 14 H 0.087 0.913 15 C -0.131 4.131 16 C 0.173 3.827 17 H 0.062 0.938 18 N -0.717 5.717 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.066 4.066 22 N -0.962 5.962 23 Si 0.967 3.033 24 H -0.283 1.283 25 H -0.295 1.295 26 H -0.277 1.277 27 C 0.094 3.906 28 S 0.270 5.730 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.379 0.621 43 H 0.252 0.748 44 H 0.052 0.948 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.806 -0.007 -10.738 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.056 3.944 4 C -0.243 4.243 5 N -0.200 5.200 6 C -0.002 4.002 7 C -0.142 4.142 8 C -0.445 4.445 9 C 0.390 3.610 10 O -0.443 6.443 11 N -0.341 5.341 12 C -0.027 4.027 13 C -0.116 4.116 14 H 0.106 0.894 15 C -0.189 4.189 16 C 0.062 3.938 17 H 0.080 0.920 18 N -0.356 5.356 19 C -0.378 4.378 20 H 0.090 0.910 21 C -0.259 4.259 22 N -0.612 5.612 23 Si 0.796 3.204 24 H -0.210 1.210 25 H -0.221 1.221 26 H -0.203 1.203 27 C -0.032 4.032 28 S 0.530 5.470 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.212 0.788 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.658 -0.372 -10.577 28.682 hybrid contribution 1.898 0.094 -0.579 1.986 sum -24.761 -0.277 -11.156 27.159 Atomic orbital electron populations 1.23024 0.77917 1.04294 1.01772 1.87918 1.22549 1.26778 1.95831 1.21068 0.82288 0.86306 1.04735 1.27763 1.02276 1.01066 0.93206 1.66135 1.04084 1.16961 1.32827 1.20808 0.90439 0.94952 0.93961 1.20574 0.96133 1.03730 0.93802 1.25438 0.98362 1.22180 0.98511 1.16628 0.86593 0.76784 0.80976 1.90769 1.46754 1.51755 1.55043 1.48332 1.09570 1.71275 1.04889 1.22446 0.90876 1.03329 0.86090 1.22359 0.93863 1.01417 0.93927 0.89442 1.21671 1.00395 0.99659 0.97149 1.21510 0.88361 0.96959 0.86975 0.91998 1.42334 1.14775 1.28122 1.50382 1.19502 0.93447 1.04319 1.20490 0.90962 1.25469 1.01693 0.98705 0.99992 1.69776 1.35087 1.23582 1.32759 0.85315 0.79844 0.78058 0.77149 1.20957 1.22067 1.20263 1.23104 0.83053 1.00679 0.96357 1.83726 0.92890 1.62817 1.07615 0.92613 0.88540 0.91734 0.87403 0.88932 0.89879 0.89226 0.90104 0.88853 0.88972 0.93270 0.89565 0.91874 0.78753 0.93876 0.92963 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.44 16 2 O -0.41 -6.53 10.69 -148.98 -1.59 -8.12 16 3 C 0.14 1.75 6.51 71.24 0.46 2.21 16 4 C 0.03 0.62 7.01 88.46 0.62 1.24 16 5 N -0.48 -12.22 10.50 -178.29 -1.87 -14.09 16 6 C 0.14 3.80 6.79 42.09 0.29 4.08 16 7 C -0.08 -2.14 9.63 71.23 0.69 -1.45 16 8 C -0.32 -8.90 6.39 23.88 0.15 -8.75 16 9 C 0.60 20.34 7.79 86.45 0.67 21.02 16 10 O -0.56 -22.60 14.58 -4.30 -0.06 -22.66 16 11 N -0.61 -19.39 3.33 -816.46 -2.72 -22.10 16 12 C 0.10 2.27 4.80 86.73 0.42 2.69 16 13 C -0.10 -2.62 3.15 -9.60 -0.03 -2.66 16 14 H 0.09 2.45 8.00 -2.39 -0.02 2.43 16 15 C -0.13 -3.00 9.17 71.98 0.66 -2.34 16 16 C 0.17 6.44 3.13 46.38 0.15 6.59 16 17 H 0.06 2.38 8.04 -2.39 -0.02 2.36 16 18 N -0.72 -34.02 5.28 -316.38 -1.67 -35.69 16 19 C -0.25 -13.21 9.98 84.03 0.84 -12.37 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 22 N -0.96 -56.85 13.06 21.65 0.28 -56.57 16 23 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 27 C 0.09 3.57 6.62 86.86 0.58 4.15 16 28 S 0.27 5.06 18.69 -56.49 -1.06 4.01 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 2.05 8.14 -2.38 -0.02 2.04 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 36 H 0.08 2.36 6.16 -2.39 -0.01 2.35 16 37 H 0.09 1.80 6.89 -2.39 -0.02 1.78 16 38 H 0.09 1.84 6.67 -2.39 -0.02 1.82 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 42 H 0.38 19.07 7.71 -92.70 -0.71 18.36 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.05 2.21 7.99 -2.38 -0.02 2.19 16 45 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -71.45 381.58 0.84 -70.61 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.29 Total: 24.37 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 7.20 Total: 12.66 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -5.97 Total: -128.45 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.65 Total: -30.79 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -1.06 Total: 4.01 kcal Total: -71.45 0.84 -70.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939633900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.181 kcal (2) G-P(sol) polarization free energy of solvation -71.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds