Wall clock time and date at job start Tue Mar 31 2020 22:31:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.32569 * 121.64412 * 2 1
4 4 S 1.77234 * 105.32015 * 180.19588 * 3 2 1
5 5 C 1.72210 * 94.84313 * 359.76275 * 4 3 2
6 6 O 1.21830 * 127.05087 * 180.02562 * 5 4 3
7 7 N 1.34241 * 105.89104 * 0.02562 * 5 4 3
8 8 C 1.46498 * 121.38436 * 179.97438 * 7 5 4
9 9 C 1.50694 * 109.47093 * 90.02445 * 8 7 5
10 10 O 1.21285 * 120.00392 * 359.97438 * 9 8 7
11 11 N 1.34781 * 119.99785 * 180.02562 * 9 8 7
12 12 C 1.46500 * 119.99919 * 180.02562 * 11 9 8
13 13 H 1.09007 * 109.46374 * 34.96782 * 12 11 9
14 14 C 1.53045 * 109.45791 * 274.99776 * 12 11 9
15 15 C 1.53197 * 109.33523 * 178.61091 * 14 12 11
16 16 N 1.46988 * 108.74054 * 54.62539 * 15 14 12
17 17 C 1.36935 * 120.61996 * 126.38026 * 16 15 14
18 18 H 1.07998 * 120.00584 * 207.68595 * 17 16 15
19 19 C 1.38815 * 119.99415 * 27.69166 * 17 16 15
20 20 N 1.31614 * 120.00332 * 17.34621 * 19 17 16
21 21 Si 1.86808 * 119.99812 * 197.34985 * 19 17 16
22 22 H 1.48505 * 109.46884 * 89.99636 * 21 19 17
23 23 H 1.48498 * 109.47378 * 209.99899 * 21 19 17
24 24 H 1.48504 * 109.47049 * 329.99850 * 21 19 17
25 25 C 1.46930 * 118.75483 * 306.40354 * 16 15 14
26 26 C 1.53034 * 109.45119 * 154.93872 * 12 11 9
27 27 H 1.08990 * 109.49953 * 61.42402 * 26 12 11
28 28 C 1.52999 * 109.49506 * 301.32775 * 26 12 11
29 29 H 1.09003 * 109.47145 * 270.23904 * 1 2 3
30 30 H 1.08993 * 109.47290 * 30.24439 * 1 2 3
31 31 H 1.09007 * 109.46906 * 150.24325 * 1 2 3
32 32 H 1.08004 * 127.34062 * 359.97438 * 3 2 1
33 33 H 1.09000 * 109.46671 * 330.02383 * 8 7 5
34 34 H 1.08993 * 109.46924 * 210.02838 * 8 7 5
35 35 H 0.96996 * 120.00040 * 359.97438 * 11 9 8
36 36 H 1.08994 * 109.49819 * 298.57720 * 14 12 11
37 37 H 1.09001 * 109.49650 * 58.64804 * 14 12 11
38 38 H 1.09008 * 109.57889 * 174.43827 * 15 14 12
39 39 H 1.08995 * 109.59109 * 294.86129 * 15 14 12
40 40 H 0.97007 * 120.00009 * 179.97438 * 20 19 17
41 41 H 1.08994 * 109.58730 * 293.82478 * 25 16 15
42 42 H 1.08999 * 109.70895 * 173.46405 * 25 16 15
43 43 H 1.09000 * 109.47320 * 60.00075 * 28 26 12
44 44 H 1.08997 * 109.47585 * 180.02562 * 28 26 12
45 45 H 1.09006 * 109.47449 * 300.00264 * 28 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2025 1.1286 0.0000
4 16 3.9034 0.6305 -0.0058
5 6 3.5606 -1.0572 -0.0008
6 8 4.3674 -1.9701 -0.0016
7 7 2.2222 -1.1604 0.0043
8 6 1.5577 -2.4660 0.0092
9 6 1.3345 -2.9108 1.4316
10 8 1.6955 -2.2068 2.3509
11 7 0.7348 -4.0915 1.6821
12 6 0.5173 -4.5237 3.0649
13 1 0.2989 -3.6555 3.6868
14 6 1.7770 -5.2198 3.5856
15 6 1.5589 -5.6397 5.0427
16 7 0.3404 -6.4580 5.1211
17 6 0.3697 -7.6989 5.6994
18 1 -0.3327 -8.4573 5.3865
19 6 1.3021 -7.9820 6.6880
20 7 1.9197 -7.0006 7.3106
21 14 1.6803 -9.7560 7.1347
22 1 2.7951 -10.2526 6.2885
23 1 2.0720 -9.8336 8.5650
24 1 0.4746 -10.5920 6.9057
25 6 -0.9093 -5.9198 4.5668
26 6 -0.6628 -5.4967 3.1152
27 1 -0.4349 -6.3764 2.5135
28 6 -1.9142 -4.8103 2.5639
29 1 -0.3633 0.0043 1.0277
30 1 -0.3633 0.8877 -0.5176
31 1 -0.3633 -0.8922 -0.5101
32 1 1.8152 2.1368 -0.0004
33 1 2.1844 -3.1945 -0.5053
34 1 0.5982 -2.3872 -0.5017
35 1 0.4465 -4.6547 0.9470
36 1 1.9819 -6.1021 2.9795
37 1 2.6221 -4.5339 3.5273
38 1 2.4138 -6.2219 5.3869
39 1 1.4438 -4.7525 5.6654
40 1 2.5711 -7.1984 8.0017
41 1 -1.2257 -5.0555 5.1506
42 1 -1.6848 -6.6852 4.5976
43 1 -1.7375 -4.5069 1.5320
44 1 -2.7547 -5.5034 2.6002
45 1 -2.1422 -3.9315 3.1670
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000944833153.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:31:42
Heat of formation + Delta-G solvation = -15.112140 kcal
Electronic energy + Delta-G solvation = -27953.084748 eV
Core-core repulsion = 24098.272522 eV
Total energy + Delta-G solvation = -3854.812226 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-41.42161 -39.59567 -37.81982 -37.51837 -34.61571 -32.97847 -32.58887 -31.26608
-30.69091 -29.65145 -27.08679 -25.92624 -24.99755 -23.89651 -22.33941 -21.16554
-20.93589 -20.25243 -19.37251 -18.28307 -17.63282 -17.40515 -16.68545 -15.98243
-15.77520 -15.29328 -15.00684 -14.80001 -14.44925 -14.06853 -13.98043 -13.90825
-13.79945 -13.65115 -13.33804 -12.99496 -12.80876 -12.72841 -12.38282 -12.09047
-11.81543 -11.54943 -11.36594 -11.35472 -11.09770 -10.85264 -10.69972 -10.41915
-10.32886 -10.23986 -10.23602 -10.04818 -9.82206 -9.71897 -9.41094 -8.80134
-8.45133 -8.13104 -6.71894 -5.80147 -3.23407 0.76987 1.20105 1.58418
1.94044 2.45785 2.53381 3.22750 3.37570 3.44031 3.45436 4.15591
4.37587 4.47506 4.57225 4.68522 4.76891 5.06030 5.09622 5.12831
5.22941 5.24563 5.36725 5.37318 5.43262 5.56298 5.81309 5.83497
5.89682 6.03249 6.18408 6.19975 6.27784 6.37964 6.45860 6.55055
6.62856 6.74279 6.84662 6.90686 7.12152 7.34434 7.52313 7.66136
7.77844 8.19142 8.42512 9.18487 9.81947 10.38094 11.28291
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.019379 B = 0.002704 C = 0.002496
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1444.548017 B =10352.493138 C =11214.142725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C 0.112 3.888
3 C -0.241 4.241
4 S 0.004 5.996
5 C 0.487 3.513
6 O -0.469 6.469
7 N -0.516 5.516
8 C 0.078 3.922
9 C 0.495 3.505
10 O -0.524 6.524
11 N -0.716 5.716
12 C 0.159 3.841
13 H 0.082 0.918
14 C -0.148 4.148
15 C 0.174 3.826
16 N -0.592 5.592
17 C -0.256 4.256
18 H 0.066 0.934
19 C 0.003 3.997
20 N -0.900 5.900
21 Si 0.903 3.097
22 H -0.287 1.287
23 H -0.291 1.291
24 H -0.279 1.279
25 C 0.155 3.845
26 C -0.115 4.115
27 H 0.072 0.928
28 C -0.141 4.141
29 H 0.089 0.911
30 H 0.091 0.909
31 H 0.074 0.926
32 H 0.192 0.808
33 H 0.123 0.877
34 H 0.121 0.879
35 H 0.396 0.604
36 H 0.055 0.945
37 H 0.053 0.947
38 H 0.090 0.910
39 H 0.020 0.980
40 H 0.255 0.745
41 H 0.020 0.980
42 H 0.058 0.942
43 H 0.045 0.955
44 H 0.054 0.946
45 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.167 14.868 -19.873 25.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.001 3.999
3 C -0.379 4.379
4 S 0.247 5.753
5 C 0.169 3.831
6 O -0.348 6.348
7 N -0.236 5.236
8 C -0.052 4.052
9 C 0.278 3.722
10 O -0.399 6.399
11 N -0.367 5.367
12 C 0.056 3.944
13 H 0.100 0.900
14 C -0.188 4.188
15 C 0.048 3.952
16 N -0.315 5.315
17 C -0.386 4.386
18 H 0.084 0.916
19 C -0.196 4.196
20 N -0.544 5.544
21 Si 0.733 3.267
22 H -0.214 1.214
23 H -0.217 1.217
24 H -0.204 1.204
25 C 0.028 3.972
26 C -0.136 4.136
27 H 0.090 0.910
28 C -0.199 4.199
29 H 0.107 0.893
30 H 0.110 0.890
31 H 0.092 0.908
32 H 0.209 0.791
33 H 0.141 0.859
34 H 0.139 0.861
35 H 0.229 0.771
36 H 0.074 0.926
37 H 0.071 0.929
38 H 0.108 0.892
39 H 0.038 0.962
40 H 0.065 0.935
41 H 0.037 0.963
42 H 0.077 0.923
43 H 0.064 0.936
44 H 0.073 0.927
45 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -4.080 15.428 -19.031 24.836
hybrid contribution -1.011 -1.921 -0.017 2.170
sum -5.091 13.507 -19.048 23.899
Atomic orbital electron populations
1.20804 0.86712 1.04128 1.04391 1.19360 0.95743 0.84782 1.00017
1.24822 0.93229 1.01187 1.18661 1.85099 1.08457 1.00794 1.80946
1.21560 0.83501 0.95868 0.82194 1.90984 1.48525 1.42452 1.52848
1.45584 1.06308 1.06593 1.65139 1.21768 1.01087 0.85311 0.96985
1.20596 0.78633 0.82188 0.90787 1.90771 1.49258 1.54162 1.45707
1.46233 1.60430 1.19925 1.10145 1.21097 0.95917 0.97207 0.80200
0.89992 1.22582 0.95918 0.99024 1.01319 1.20769 0.91317 0.94191
0.88926 1.44118 1.02731 1.17042 1.67559 1.19172 1.17556 0.87789
1.14073 0.91586 1.25058 1.01188 0.97345 0.95964 1.70035 1.29553
1.29895 1.24917 0.86291 0.78373 0.84755 0.77329 1.21426 1.21738
1.20432 1.20877 0.90154 0.96737 0.89426 1.21986 0.93252 0.97404
1.00959 0.90981 1.21767 0.97766 1.00506 0.99846 0.89268 0.89016
0.90765 0.79115 0.85938 0.86081 0.77059 0.92584 0.92851 0.89177
0.96167 0.93525 0.96252 0.92335 0.93559 0.92664 0.92922
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 22.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.55 9.70 36.00 0.35 -0.20 16
2 C 0.11 0.99 6.59 -82.51 -0.54 0.45 16
3 C -0.24 -2.01 11.25 28.83 0.32 -1.68 16
4 S 0.00 0.05 22.97 -107.50 -2.47 -2.42 16
5 C 0.49 6.95 8.27 53.82 0.45 7.40 16
6 O -0.47 -8.26 17.55 5.07 0.09 -8.18 16
7 N -0.52 -5.91 2.09 -118.58 -0.25 -6.15 16
8 C 0.08 0.75 5.75 -5.20 -0.03 0.72 16
9 C 0.49 6.75 7.86 -10.99 -0.09 6.67 16
10 O -0.52 -9.69 16.09 5.55 0.09 -9.60 16
11 N -0.72 -9.06 4.36 -53.76 -0.23 -9.29 16
12 C 0.16 2.64 1.88 -67.89 -0.13 2.51 16
13 H 0.08 1.55 7.58 -51.92 -0.39 1.16 16
14 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16
15 C 0.17 4.27 5.31 -3.67 -0.02 4.25 16
16 N -0.59 -14.63 3.00 -172.26 -0.52 -15.14 16
17 C -0.26 -6.96 9.59 -15.06 -0.14 -7.10 16
18 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16
19 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16
20 N -0.90 -26.40 11.19 55.49 0.62 -25.78 16
21 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16
22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
25 C 0.16 3.10 5.80 -3.70 -0.02 3.08 16
26 C -0.12 -1.79 2.46 -90.50 -0.22 -2.01 16
27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
28 C -0.14 -1.67 9.03 37.16 0.34 -1.33 16
29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16
30 H 0.09 0.27 8.10 -51.93 -0.42 -0.15 16
31 H 0.07 0.30 6.18 -51.92 -0.32 -0.02 16
32 H 0.19 0.95 8.06 -52.48 -0.42 0.53 16
33 H 0.12 1.10 7.80 -51.93 -0.41 0.70 16
34 H 0.12 0.63 6.12 -51.93 -0.32 0.32 16
35 H 0.40 3.68 8.31 -40.82 -0.34 3.34 16
36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16
38 H 0.09 2.48 6.04 -51.92 -0.31 2.17 16
39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
42 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16
43 H 0.05 0.44 7.36 -51.93 -0.38 0.06 16
44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
LS Contribution 377.01 15.07 5.68 5.68
Total: -1.00 -35.44 377.01 -8.65 -44.09
By element:
Atomic # 1 Polarization: 7.15 SS G_CDS: -6.66 Total: 0.49 kcal
Atomic # 6 Polarization: 9.60 SS G_CDS: 0.02 Total: 9.62 kcal
Atomic # 7 Polarization: -55.99 SS G_CDS: -0.38 Total: -56.37 kcal
Atomic # 8 Polarization: -17.95 SS G_CDS: 0.18 Total: -17.77 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal
Atomic # 16 Polarization: 0.05 SS G_CDS: -2.47 Total: -2.42 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -35.44 -8.65 -44.09 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000944833153.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.976 kcal
(2) G-P(sol) polarization free energy of solvation -35.436 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.459 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.112 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds