Wall clock time and date at job start Tue Mar 31 2020 22:31:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.32569 * 121.64412 * 2 1
4 4 S 1.77234 * 105.32015 * 180.19588 * 3 2 1
5 5 C 1.72210 * 94.84313 * 359.76275 * 4 3 2
6 6 O 1.21830 * 127.05087 * 180.02562 * 5 4 3
7 7 N 1.34241 * 105.89104 * 0.02562 * 5 4 3
8 8 C 1.46498 * 121.38436 * 179.97438 * 7 5 4
9 9 C 1.50694 * 109.47093 * 90.02445 * 8 7 5
10 10 O 1.21285 * 120.00392 * 359.97438 * 9 8 7
11 11 N 1.34781 * 119.99785 * 180.02562 * 9 8 7
12 12 C 1.46500 * 119.99919 * 180.02562 * 11 9 8
13 13 H 1.09007 * 109.46374 * 34.96782 * 12 11 9
14 14 C 1.53045 * 109.45791 * 274.99776 * 12 11 9
15 15 C 1.53197 * 109.33523 * 178.61091 * 14 12 11
16 16 N 1.46988 * 108.74054 * 54.62539 * 15 14 12
17 17 C 1.36935 * 120.61996 * 126.38026 * 16 15 14
18 18 H 1.07998 * 120.00584 * 207.68595 * 17 16 15
19 19 C 1.38815 * 119.99415 * 27.69166 * 17 16 15
20 20 N 1.31614 * 120.00332 * 17.34621 * 19 17 16
21 21 Si 1.86808 * 119.99812 * 197.34985 * 19 17 16
22 22 H 1.48505 * 109.46884 * 89.99636 * 21 19 17
23 23 H 1.48498 * 109.47378 * 209.99899 * 21 19 17
24 24 H 1.48504 * 109.47049 * 329.99850 * 21 19 17
25 25 C 1.46930 * 118.75483 * 306.40354 * 16 15 14
26 26 C 1.53034 * 109.45119 * 154.93872 * 12 11 9
27 27 H 1.08990 * 109.49953 * 61.42402 * 26 12 11
28 28 C 1.52999 * 109.49506 * 301.32775 * 26 12 11
29 29 H 1.09003 * 109.47145 * 270.23904 * 1 2 3
30 30 H 1.08993 * 109.47290 * 30.24439 * 1 2 3
31 31 H 1.09007 * 109.46906 * 150.24325 * 1 2 3
32 32 H 1.08004 * 127.34062 * 359.97438 * 3 2 1
33 33 H 1.09000 * 109.46671 * 330.02383 * 8 7 5
34 34 H 1.08993 * 109.46924 * 210.02838 * 8 7 5
35 35 H 0.96996 * 120.00040 * 359.97438 * 11 9 8
36 36 H 1.08994 * 109.49819 * 298.57720 * 14 12 11
37 37 H 1.09001 * 109.49650 * 58.64804 * 14 12 11
38 38 H 1.09008 * 109.57889 * 174.43827 * 15 14 12
39 39 H 1.08995 * 109.59109 * 294.86129 * 15 14 12
40 40 H 0.97007 * 120.00009 * 179.97438 * 20 19 17
41 41 H 1.08994 * 109.58730 * 293.82478 * 25 16 15
42 42 H 1.08999 * 109.70895 * 173.46405 * 25 16 15
43 43 H 1.09000 * 109.47320 * 60.00075 * 28 26 12
44 44 H 1.08997 * 109.47585 * 180.02562 * 28 26 12
45 45 H 1.09006 * 109.47449 * 300.00264 * 28 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2025 1.1286 0.0000
4 16 3.9034 0.6305 -0.0058
5 6 3.5606 -1.0572 -0.0008
6 8 4.3674 -1.9701 -0.0016
7 7 2.2222 -1.1604 0.0043
8 6 1.5577 -2.4660 0.0092
9 6 1.3345 -2.9108 1.4316
10 8 1.6955 -2.2068 2.3509
11 7 0.7348 -4.0915 1.6821
12 6 0.5173 -4.5237 3.0649
13 1 0.2989 -3.6555 3.6868
14 6 1.7770 -5.2198 3.5856
15 6 1.5589 -5.6397 5.0427
16 7 0.3404 -6.4580 5.1211
17 6 0.3697 -7.6989 5.6994
18 1 -0.3327 -8.4573 5.3865
19 6 1.3021 -7.9820 6.6880
20 7 1.9197 -7.0006 7.3106
21 14 1.6803 -9.7560 7.1347
22 1 2.7951 -10.2526 6.2885
23 1 2.0720 -9.8336 8.5650
24 1 0.4746 -10.5920 6.9057
25 6 -0.9093 -5.9198 4.5668
26 6 -0.6628 -5.4967 3.1152
27 1 -0.4349 -6.3764 2.5135
28 6 -1.9142 -4.8103 2.5639
29 1 -0.3633 0.0043 1.0277
30 1 -0.3633 0.8877 -0.5176
31 1 -0.3633 -0.8922 -0.5101
32 1 1.8152 2.1368 -0.0004
33 1 2.1844 -3.1945 -0.5053
34 1 0.5982 -2.3872 -0.5017
35 1 0.4465 -4.6547 0.9470
36 1 1.9819 -6.1021 2.9795
37 1 2.6221 -4.5339 3.5273
38 1 2.4138 -6.2219 5.3869
39 1 1.4438 -4.7525 5.6654
40 1 2.5711 -7.1984 8.0017
41 1 -1.2257 -5.0555 5.1506
42 1 -1.6848 -6.6852 4.5976
43 1 -1.7375 -4.5069 1.5320
44 1 -2.7547 -5.5034 2.6002
45 1 -2.1422 -3.9315 3.1670
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000944833153.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:31:41
Heat of formation + Delta-G solvation = -39.873761 kcal
Electronic energy + Delta-G solvation = -27954.158493 eV
Core-core repulsion = 24098.272522 eV
Total energy + Delta-G solvation = -3855.885971 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.32230 -40.82914 -39.17506 -38.63252 -36.24199 -34.32667 -33.50781 -32.95750
-31.94988 -30.86636 -27.93857 -27.41965 -26.59402 -24.90381 -23.85848 -22.69063
-22.07248 -21.40404 -20.77119 -19.09235 -18.88875 -18.50845 -18.30435 -17.21271
-16.88457 -16.66987 -16.33540 -16.00417 -15.64106 -15.49688 -15.29181 -15.03707
-14.72861 -14.63029 -14.60276 -14.38889 -14.24401 -13.69374 -13.48121 -13.09549
-13.06159 -12.91262 -12.72198 -12.63371 -12.57180 -12.33322 -12.11925 -12.11076
-12.04951 -11.69283 -11.60939 -11.40802 -11.30037 -11.18499 -10.60427 -10.49872
-10.07811 -8.97370 -8.75487 -7.90551 -5.36956 -0.14926 0.39033 0.83817
1.05477 1.44931 1.46290 1.47107 1.55725 1.65132 2.18137 2.48736
3.25074 3.47876 3.57725 3.68144 3.75588 3.76633 3.99943 4.03465
4.15623 4.25346 4.33606 4.55459 4.56584 4.67229 4.69578 4.71927
4.75838 4.85631 4.86672 4.93735 4.98006 5.10513 5.14104 5.27743
5.29099 5.37035 5.48205 5.50806 5.60364 5.65150 5.67067 6.17453
6.34389 6.48844 7.09161 7.16466 7.80550 8.33183 9.16380
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.019379 B = 0.002704 C = 0.002496
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1444.548017 B =10352.493138 C =11214.142725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.098 4.098
2 C 0.096 3.904
3 C -0.227 4.227
4 S -0.010 6.010
5 C 0.464 3.536
6 O -0.523 6.523
7 N -0.516 5.516
8 C 0.081 3.919
9 C 0.494 3.506
10 O -0.577 6.577
11 N -0.699 5.699
12 C 0.173 3.827
13 H 0.057 0.943
14 C -0.134 4.134
15 C 0.185 3.815
16 N -0.609 5.609
17 C -0.261 4.261
18 H 0.076 0.924
19 C -0.055 4.055
20 N -0.939 5.939
21 Si 0.969 3.031
22 H -0.287 1.287
23 H -0.298 1.298
24 H -0.262 1.262
25 C 0.148 3.852
26 C -0.099 4.099
27 H 0.081 0.919
28 C -0.132 4.132
29 H 0.079 0.921
30 H 0.122 0.878
31 H 0.094 0.906
32 H 0.229 0.771
33 H 0.131 0.869
34 H 0.177 0.823
35 H 0.418 0.582
36 H 0.060 0.940
37 H 0.035 0.965
38 H 0.052 0.948
39 H -0.013 1.013
40 H 0.249 0.751
41 H 0.009 0.991
42 H 0.067 0.933
43 H 0.080 0.920
44 H 0.069 0.931
45 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.269 15.215 -23.078 29.155
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.013 4.013
3 C -0.364 4.364
4 S 0.234 5.766
5 C 0.148 3.852
6 O -0.407 6.407
7 N -0.236 5.236
8 C -0.047 4.047
9 C 0.279 3.721
10 O -0.456 6.456
11 N -0.352 5.352
12 C 0.068 3.932
13 H 0.075 0.925
14 C -0.174 4.174
15 C 0.058 3.942
16 N -0.332 5.332
17 C -0.391 4.391
18 H 0.093 0.907
19 C -0.251 4.251
20 N -0.585 5.585
21 Si 0.797 3.203
22 H -0.214 1.214
23 H -0.225 1.225
24 H -0.186 1.186
25 C 0.023 3.977
26 C -0.120 4.120
27 H 0.099 0.901
28 C -0.190 4.190
29 H 0.098 0.902
30 H 0.140 0.860
31 H 0.112 0.888
32 H 0.246 0.754
33 H 0.148 0.852
34 H 0.194 0.806
35 H 0.256 0.744
36 H 0.079 0.921
37 H 0.054 0.946
38 H 0.071 0.929
39 H 0.005 0.995
40 H 0.058 0.942
41 H 0.027 0.973
42 H 0.085 0.915
43 H 0.099 0.901
44 H 0.088 0.912
45 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -7.270 15.788 -22.308 28.280
hybrid contribution -0.089 -1.907 1.006 2.158
sum -7.359 13.881 -21.302 26.469
Atomic orbital electron populations
1.20955 0.83573 1.06692 1.04435 1.20050 0.97563 0.83888 0.99772
1.25405 0.90535 1.02847 1.17635 1.85102 1.11751 0.99404 1.80389
1.21982 0.84389 0.96370 0.82480 1.90936 1.50061 1.44228 1.55452
1.45714 1.05650 1.08129 1.64121 1.21981 1.03774 0.84848 0.94076
1.21337 0.77103 0.81534 0.92077 1.90762 1.51248 1.55771 1.47827
1.45879 1.60158 1.20133 1.08989 1.20627 0.94361 0.96127 0.82052
0.92485 1.22331 0.97481 0.99057 0.98531 1.20427 0.90436 0.92216
0.91121 1.44358 1.04280 1.16708 1.67869 1.19584 1.17148 0.88982
1.13376 0.90650 1.25884 1.01612 1.01119 0.96437 1.70214 1.30493
1.31989 1.25828 0.85237 0.78460 0.80278 0.76313 1.21443 1.22472
1.18620 1.21113 0.88326 0.96432 0.91870 1.21772 0.94644 0.97664
0.97917 0.90089 1.21715 0.95761 1.00154 1.01366 0.90242 0.85988
0.88773 0.75450 0.85155 0.80580 0.74377 0.92096 0.94625 0.92941
0.99525 0.94238 0.97280 0.91475 0.90149 0.91210 0.93463
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.61 9.70 71.23 0.69 0.08 16
2 C 0.10 1.43 6.59 40.71 0.27 1.70 16
3 C -0.23 -3.17 11.25 66.67 0.75 -2.42 16
4 S -0.01 -0.21 22.97 -56.49 -1.30 -1.51 16
5 C 0.46 13.37 8.27 129.87 1.07 14.45 16
6 O -0.52 -19.26 17.55 -4.77 -0.08 -19.34 16
7 N -0.52 -10.94 2.09 -647.52 -1.35 -12.30 16
8 C 0.08 1.33 5.75 85.63 0.49 1.82 16
9 C 0.49 12.66 7.86 87.65 0.69 13.35 16
10 O -0.58 -21.47 16.09 -3.04 -0.05 -21.52 16
11 N -0.70 -15.97 4.36 -442.40 -1.93 -17.90 16
12 C 0.17 5.63 1.88 45.02 0.08 5.72 16
13 H 0.06 2.19 7.58 -2.38 -0.02 2.17 16
14 C -0.13 -5.55 5.65 30.68 0.17 -5.38 16
15 C 0.18 9.57 5.31 86.35 0.46 10.03 16
16 N -0.61 -30.75 3.00 -698.91 -2.09 -32.85 16
17 C -0.26 -14.30 9.59 84.03 0.81 -13.50 16
18 H 0.08 3.92 7.89 -2.91 -0.02 3.90 16
19 C -0.06 -3.15 4.91 84.86 0.42 -2.74 16
20 N -0.94 -57.71 11.19 21.65 0.24 -57.47 16
21 Si 0.97 45.46 29.59 68.60 2.03 47.49 16
22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16
23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16
24 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16
25 C 0.15 5.84 5.80 86.36 0.50 6.34 16
26 C -0.10 -2.86 2.46 -10.72 -0.03 -2.89 16
27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
28 C -0.13 -2.58 9.03 71.98 0.65 -1.93 16
29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
30 H 0.12 0.05 8.10 -2.39 -0.02 0.03 16
31 H 0.09 0.21 6.18 -2.38 -0.01 0.19 16
32 H 0.23 1.31 8.06 -2.91 -0.02 1.29 16
33 H 0.13 2.03 7.80 -2.39 -0.02 2.01 16
34 H 0.18 0.85 6.12 -2.39 -0.01 0.84 16
35 H 0.42 5.97 8.31 -92.71 -0.77 5.20 16
36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16
37 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16
38 H 0.05 3.09 6.04 -2.38 -0.01 3.07 16
39 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16
40 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16
41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16
42 H 0.07 2.50 7.94 -2.39 -0.02 2.48 16
43 H 0.08 1.06 7.36 -2.39 -0.02 1.05 16
44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
45 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16
Total: -1.00 -85.35 377.01 2.73 -82.62
By element:
Atomic # 1 Polarization: 7.91 SS G_CDS: 0.24 Total: 8.15 kcal
Atomic # 6 Polarization: 17.60 SS G_CDS: 7.03 Total: 24.63 kcal
Atomic # 7 Polarization: -115.38 SS G_CDS: -5.14 Total: -120.51 kcal
Atomic # 8 Polarization: -40.73 SS G_CDS: -0.13 Total: -40.86 kcal
Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal
Atomic # 16 Polarization: -0.21 SS G_CDS: -1.30 Total: -1.51 kcal
Total: -85.35 2.73 -82.62 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000944833153.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.743 kcal
(2) G-P(sol) polarization free energy of solvation -85.349 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.607 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.616 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds