Wall clock time and date at job start Tue Mar 31 2020 23:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47104 * 2 1 4 4 N 1.29429 * 124.80212 * 89.97319 * 3 2 1 5 5 C 1.30943 * 117.36352 * 180.02562 * 4 3 2 6 6 C 1.50705 * 122.90565 * 180.02562 * 5 4 3 7 7 C 1.35662 * 114.19342 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.13708 * 180.02562 * 7 5 4 9 9 O 1.21690 * 119.99604 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00209 * 179.97438 * 8 7 5 11 11 C 1.46503 * 119.99675 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46949 * 179.97438 * 11 10 8 13 13 H 1.08995 * 110.92025 * 308.90285 * 12 11 10 14 14 C 1.54914 * 111.00479 * 72.80144 * 12 11 10 15 15 N 1.47424 * 104.83283 * 155.08320 * 14 12 11 16 16 C 1.36936 * 125.64804 * 155.91066 * 15 14 12 17 17 H 1.07995 * 120.00105 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99914 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00046 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99790 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47274 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47083 * 119.99935 * 20 18 16 23 23 H 1.48500 * 109.46907 * 239.99609 * 20 18 16 24 24 C 1.47024 * 108.70367 * 335.86949 * 15 14 12 25 25 C 1.54320 * 107.27028 * 1.06341 * 24 15 14 26 26 H 1.09007 * 110.87037 * 263.75332 * 25 24 15 27 27 O 1.42905 * 110.72270 * 140.55296 * 25 24 15 28 28 S 1.70951 * 124.80717 * 270.29322 * 3 2 1 29 29 H 1.09002 * 109.47008 * 60.00466 * 1 2 3 30 30 H 1.09007 * 109.46616 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47119 * 299.99828 * 1 2 3 32 32 H 1.09001 * 109.47589 * 240.00170 * 2 1 3 33 33 H 1.09002 * 109.47008 * 119.99534 * 2 1 3 34 34 H 1.08993 * 109.47147 * 269.95552 * 6 5 4 35 35 H 1.09000 * 109.46696 * 29.96003 * 6 5 4 36 36 H 1.09001 * 109.46772 * 149.95643 * 6 5 4 37 37 H 0.96991 * 120.00323 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.47597 * 59.99798 * 11 10 8 39 39 H 1.09000 * 109.47377 * 299.99741 * 11 10 8 40 40 H 1.08994 * 110.36827 * 273.91927 * 14 12 11 41 41 H 1.09000 * 110.36487 * 36.24428 * 14 12 11 42 42 H 0.97004 * 119.99602 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.88770 * 241.64003 * 24 15 14 44 44 H 1.09009 * 109.87952 * 120.47807 * 24 15 14 45 45 H 0.96705 * 113.99788 * 66.47530 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2781 2.1175 1.0628 5 6 2.7105 3.3418 0.8933 6 6 3.0357 4.2616 2.0419 7 6 2.8415 3.7103 -0.4058 8 6 3.3030 5.0147 -0.8926 9 8 3.6100 5.8859 -0.1003 10 7 3.3869 5.2485 -2.2172 11 6 3.8484 6.5512 -2.7033 12 6 3.8511 6.5529 -4.2332 13 1 4.3855 5.6863 -4.6224 14 6 2.4070 6.6110 -4.7910 15 7 2.5441 7.2080 -6.1320 16 6 1.6661 7.0476 -7.1705 17 1 0.7831 6.4394 -7.0421 18 6 1.9118 7.6659 -8.3888 19 7 2.9883 8.4068 -8.5456 20 14 0.7145 7.4465 -9.8058 21 1 -0.4066 6.5728 -9.3758 22 1 0.1819 8.7714 -10.2135 23 1 1.4168 6.8204 -10.9548 24 6 3.7790 8.0050 -6.1692 25 6 4.4521 7.8718 -4.7869 26 1 4.1915 8.7136 -4.1454 27 8 5.8704 7.7628 -4.9235 28 16 2.3508 2.3433 -1.4036 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1453 4.8262 2.3185 35 1 3.3721 3.6725 2.8950 36 1 3.8249 4.9514 1.7427 37 1 3.1425 4.5541 -2.8487 38 1 4.8582 6.7383 -2.3384 39 1 3.1803 7.3321 -2.3399 40 1 1.9876 5.6076 -4.8636 41 1 1.7809 7.2399 -4.1580 42 1 3.1597 8.8392 -9.3968 43 1 3.5401 9.0500 -6.3661 44 1 4.4439 7.6223 -6.9437 45 1 6.2951 8.5612 -5.2662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958476941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:23 Heat of formation + Delta-G solvation = -25.458341 kcal Electronic energy + Delta-G solvation = -26801.344191 eV Core-core repulsion = 22946.083320 eV Total energy + Delta-G solvation = -3855.260871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58167 -39.38443 -38.19806 -35.24264 -34.77935 -34.57375 -32.32770 -31.15630 -30.07159 -28.45670 -27.46493 -25.85431 -25.47109 -23.67279 -22.26709 -21.69335 -20.42866 -20.28134 -19.33611 -18.17923 -17.23029 -16.95691 -16.54149 -15.94755 -15.69759 -15.34529 -14.92354 -14.77647 -14.48290 -14.22068 -13.98195 -13.77976 -13.61666 -13.33542 -13.09133 -12.72007 -12.69322 -12.47669 -12.26400 -12.08569 -12.06517 -11.61430 -11.56905 -11.50876 -11.27124 -11.00390 -10.86911 -10.63078 -10.25993 -10.07014 -10.00234 -9.86668 -9.78280 -9.75648 -9.25831 -9.14656 -8.90752 -8.70220 -6.94475 -5.79760 -3.14386 -0.00248 0.90563 1.31855 2.21357 3.03745 3.04886 3.34957 3.40426 3.42999 3.64074 4.39873 4.43571 4.63887 4.68707 4.70079 4.74491 4.86531 5.01083 5.12646 5.14459 5.37298 5.39838 5.46173 5.46326 5.51721 5.59114 5.62724 5.69321 5.75455 5.80773 5.94932 5.98498 6.12959 6.16957 6.28077 6.36162 6.48970 6.76479 7.29701 7.35205 7.42759 7.45527 7.70871 8.04784 8.14610 8.15926 9.11790 9.72282 10.36296 11.31899 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.002697 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.571568 B =10380.425087 C =12044.238950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.065 3.935 4 N -0.478 5.478 5 C 0.149 3.851 6 C -0.089 4.089 7 C -0.299 4.299 8 C 0.596 3.404 9 O -0.526 6.526 10 N -0.717 5.717 11 C 0.134 3.866 12 C -0.109 4.109 13 H 0.090 0.910 14 C 0.141 3.859 15 N -0.602 5.602 16 C -0.230 4.230 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.152 3.848 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.567 6.567 28 S 0.165 5.835 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.399 0.601 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.024 0.976 42 H 0.253 0.747 43 H 0.046 0.954 44 H 0.058 0.942 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.147 -13.484 17.076 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.211 4.211 4 N -0.193 5.193 5 C 0.011 3.989 6 C -0.148 4.148 7 C -0.423 4.423 8 C 0.381 3.619 9 O -0.405 6.405 10 N -0.368 5.368 11 C 0.011 3.989 12 C -0.129 4.129 13 H 0.108 0.892 14 C 0.015 3.985 15 N -0.329 5.329 16 C -0.358 4.358 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.744 3.256 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.027 3.973 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.372 6.372 28 S 0.423 5.577 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.230 -13.832 17.006 21.922 hybrid contribution -0.469 0.687 -0.779 1.140 sum -0.700 -13.144 16.228 20.895 Atomic orbital electron populations 1.21793 0.93047 1.02892 1.02966 1.20328 0.97053 0.87083 1.04694 1.27440 1.00613 1.01803 0.91216 1.66085 1.15978 1.05906 1.31288 1.20674 0.94109 0.90427 0.93687 1.20667 1.03723 0.96984 0.93431 1.25494 1.18760 1.00808 0.97264 1.16634 0.77723 0.84900 0.82595 1.90780 1.49996 1.44831 1.54865 1.45946 1.67583 1.17215 1.06048 1.21448 1.00200 0.83618 0.93640 1.22623 0.98706 0.99310 0.92232 0.89194 1.21629 0.92146 0.96905 0.87864 1.44316 1.24315 1.56544 1.07769 1.19112 1.01432 1.26021 0.89284 0.90190 1.24824 0.98011 0.99669 0.97895 1.69952 1.26647 1.36032 1.24296 0.86017 0.79950 0.77352 0.82264 1.20443 1.21692 1.21683 1.21828 0.88009 0.96426 0.91072 1.23119 0.80524 0.95474 0.98555 0.92462 1.86421 1.19954 1.42425 1.88351 1.84004 1.58285 1.04221 1.11206 0.92104 0.91068 0.91816 0.89200 0.88413 0.90084 0.90834 0.88072 0.76660 0.90793 0.90942 0.93973 0.95840 0.93701 0.93591 0.92355 0.77663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.05 -0.32 6.51 -27.88 -0.18 -0.50 16 3 C 0.06 0.63 6.64 -13.29 -0.09 0.54 16 4 N -0.48 -5.66 10.50 -7.70 -0.08 -5.74 16 5 C 0.15 1.87 6.79 -83.89 -0.57 1.30 16 6 C -0.09 -1.00 9.70 36.01 0.35 -0.65 16 7 C -0.30 -3.81 6.48 -37.10 -0.24 -4.05 16 8 C 0.60 8.62 7.78 -12.85 -0.10 8.52 16 9 O -0.53 -8.76 14.27 5.20 0.07 -8.68 16 10 N -0.72 -9.78 5.50 -61.62 -0.34 -10.12 16 11 C 0.13 1.99 5.13 -4.04 -0.02 1.97 16 12 C -0.11 -1.85 2.77 -88.47 -0.25 -2.10 16 13 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 14 C 0.14 2.76 6.65 -2.53 -0.02 2.74 16 15 N -0.60 -14.90 3.39 -170.07 -0.58 -15.48 16 16 C -0.23 -6.26 10.28 -15.06 -0.15 -6.42 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -26.48 10.31 55.49 0.57 -25.91 16 20 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 C 0.15 3.56 5.15 -3.06 -0.02 3.54 16 25 C 0.08 1.52 3.80 -24.90 -0.09 1.43 16 26 H 0.06 0.97 8.04 -51.92 -0.42 0.55 16 27 O -0.57 -9.66 13.39 -35.23 -0.47 -10.13 16 28 S 0.16 1.63 22.31 -107.50 -2.40 -0.77 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.29 8.14 -51.92 -0.42 -0.14 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.25 6.01 -51.93 -0.31 0.94 16 37 H 0.40 4.89 7.66 -40.82 -0.31 4.58 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.02 0.46 7.91 -51.93 -0.41 0.05 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 43 H 0.05 1.18 7.51 -51.93 -0.39 0.79 16 44 H 0.06 1.54 7.30 -51.92 -0.38 1.16 16 45 H 0.38 4.96 9.12 45.56 0.42 5.37 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -32.94 382.64 -9.58 -42.52 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.99 Total: 6.36 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.11 Total: 5.55 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.42 Total: -57.25 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.40 Total: -18.81 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.40 Total: -0.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.94 -9.58 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958476941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.057 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds