Wall clock time and date at job start Tue Mar 31 2020 23:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47104 * 2 1 4 4 N 1.29429 * 124.80212 * 89.97319 * 3 2 1 5 5 C 1.30943 * 117.36352 * 180.02562 * 4 3 2 6 6 C 1.50705 * 122.90565 * 180.02562 * 5 4 3 7 7 C 1.35662 * 114.19342 * 359.97438 * 5 4 3 8 8 C 1.46679 * 126.13708 * 180.02562 * 7 5 4 9 9 O 1.21690 * 119.99604 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00209 * 179.97438 * 8 7 5 11 11 C 1.46503 * 119.99675 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46949 * 179.97438 * 11 10 8 13 13 H 1.08995 * 110.92025 * 308.90285 * 12 11 10 14 14 C 1.54914 * 111.00479 * 72.80144 * 12 11 10 15 15 N 1.47424 * 104.83283 * 155.08320 * 14 12 11 16 16 C 1.36936 * 125.64804 * 155.91066 * 15 14 12 17 17 H 1.07995 * 120.00105 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99914 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00046 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99790 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47274 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47083 * 119.99935 * 20 18 16 23 23 H 1.48500 * 109.46907 * 239.99609 * 20 18 16 24 24 C 1.47024 * 108.70367 * 335.86949 * 15 14 12 25 25 C 1.54320 * 107.27028 * 1.06341 * 24 15 14 26 26 H 1.09007 * 110.87037 * 263.75332 * 25 24 15 27 27 O 1.42905 * 110.72270 * 140.55296 * 25 24 15 28 28 S 1.70951 * 124.80717 * 270.29322 * 3 2 1 29 29 H 1.09002 * 109.47008 * 60.00466 * 1 2 3 30 30 H 1.09007 * 109.46616 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47119 * 299.99828 * 1 2 3 32 32 H 1.09001 * 109.47589 * 240.00170 * 2 1 3 33 33 H 1.09002 * 109.47008 * 119.99534 * 2 1 3 34 34 H 1.08993 * 109.47147 * 269.95552 * 6 5 4 35 35 H 1.09000 * 109.46696 * 29.96003 * 6 5 4 36 36 H 1.09001 * 109.46772 * 149.95643 * 6 5 4 37 37 H 0.96991 * 120.00323 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.47597 * 59.99798 * 11 10 8 39 39 H 1.09000 * 109.47377 * 299.99741 * 11 10 8 40 40 H 1.08994 * 110.36827 * 273.91927 * 14 12 11 41 41 H 1.09000 * 110.36487 * 36.24428 * 14 12 11 42 42 H 0.97004 * 119.99602 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.88770 * 241.64003 * 24 15 14 44 44 H 1.09009 * 109.87952 * 120.47807 * 24 15 14 45 45 H 0.96705 * 113.99788 * 66.47530 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2781 2.1175 1.0628 5 6 2.7105 3.3418 0.8933 6 6 3.0357 4.2616 2.0419 7 6 2.8415 3.7103 -0.4058 8 6 3.3030 5.0147 -0.8926 9 8 3.6100 5.8859 -0.1003 10 7 3.3869 5.2485 -2.2172 11 6 3.8484 6.5512 -2.7033 12 6 3.8511 6.5529 -4.2332 13 1 4.3855 5.6863 -4.6224 14 6 2.4070 6.6110 -4.7910 15 7 2.5441 7.2080 -6.1320 16 6 1.6661 7.0476 -7.1705 17 1 0.7831 6.4394 -7.0421 18 6 1.9118 7.6659 -8.3888 19 7 2.9883 8.4068 -8.5456 20 14 0.7145 7.4465 -9.8058 21 1 -0.4066 6.5728 -9.3758 22 1 0.1819 8.7714 -10.2135 23 1 1.4168 6.8204 -10.9548 24 6 3.7790 8.0050 -6.1692 25 6 4.4521 7.8718 -4.7869 26 1 4.1915 8.7136 -4.1454 27 8 5.8704 7.7628 -4.9235 28 16 2.3508 2.3433 -1.4036 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1453 4.8262 2.3185 35 1 3.3721 3.6725 2.8950 36 1 3.8249 4.9514 1.7427 37 1 3.1425 4.5541 -2.8487 38 1 4.8582 6.7383 -2.3384 39 1 3.1803 7.3321 -2.3399 40 1 1.9876 5.6076 -4.8636 41 1 1.7809 7.2399 -4.1580 42 1 3.1597 8.8392 -9.3968 43 1 3.5401 9.0500 -6.3661 44 1 4.4439 7.6223 -6.9437 45 1 6.2951 8.5612 -5.2662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958476941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:22 Heat of formation + Delta-G solvation = -50.057506 kcal Electronic energy + Delta-G solvation = -26802.410891 eV Core-core repulsion = 22946.083320 eV Total energy + Delta-G solvation = -3856.327571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52691 -40.51632 -39.66090 -36.66185 -36.20275 -35.24917 -34.08227 -32.03565 -31.55723 -29.75705 -28.96777 -27.17980 -26.45672 -25.23116 -22.98575 -22.78562 -22.09164 -21.65008 -20.47572 -19.07426 -18.88956 -18.33422 -17.84064 -17.12967 -16.80122 -16.74427 -16.18232 -15.77911 -15.64825 -15.58497 -15.16300 -14.80371 -14.66711 -14.45592 -14.42384 -14.03756 -13.94311 -13.69542 -13.50949 -13.23300 -13.11518 -12.94269 -12.76117 -12.58582 -12.46835 -12.39614 -12.27044 -12.08450 -11.93063 -11.79751 -11.53087 -11.20462 -10.86639 -10.75794 -10.73796 -10.64644 -10.23379 -9.78078 -8.94795 -7.87285 -5.23853 -0.86298 0.09637 0.48410 1.30514 1.46798 1.47131 1.57574 1.93864 2.01393 2.47341 2.91526 3.22099 3.33267 3.53867 3.59921 3.75049 3.76866 3.86899 4.01785 4.12726 4.21992 4.27770 4.38417 4.43368 4.54869 4.58589 4.68377 4.71575 4.78275 4.84504 4.85364 4.91380 4.98706 5.04907 5.13798 5.27918 5.31934 5.35619 5.41491 5.48041 5.70384 6.15422 6.26726 6.54345 6.88159 6.96317 7.06354 7.72794 8.36036 9.23008 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.002697 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.571568 B =10380.425087 C =12044.238950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C 0.072 3.928 4 N -0.499 5.499 5 C 0.144 3.856 6 C -0.087 4.087 7 C -0.331 4.331 8 C 0.597 3.403 9 O -0.554 6.554 10 N -0.713 5.713 11 C 0.148 3.852 12 C -0.091 4.091 13 H 0.087 0.913 14 C 0.139 3.861 15 N -0.625 5.625 16 C -0.242 4.242 17 H 0.087 0.913 18 C -0.067 4.067 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.263 1.263 22 H -0.294 1.294 23 H -0.293 1.293 24 C 0.161 3.839 25 C 0.098 3.902 26 H 0.077 0.923 27 O -0.569 6.569 28 S 0.199 5.801 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.406 0.594 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.031 0.969 42 H 0.247 0.753 43 H 0.014 0.986 44 H 0.020 0.980 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.979 -15.567 17.897 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.203 4.203 4 N -0.215 5.215 5 C 0.005 3.995 6 C -0.145 4.145 7 C -0.455 4.455 8 C 0.384 3.616 9 O -0.434 6.434 10 N -0.364 5.364 11 C 0.024 3.976 12 C -0.111 4.111 13 H 0.105 0.895 14 C 0.014 3.986 15 N -0.352 5.352 16 C -0.370 4.370 17 H 0.105 0.895 18 C -0.259 4.259 19 N -0.600 5.600 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.035 3.965 25 C 0.037 3.963 26 H 0.095 0.905 27 O -0.377 6.377 28 S 0.458 5.542 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.242 0.758 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.032 0.968 44 H 0.038 0.962 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.067 -15.940 17.838 23.946 hybrid contribution -0.228 1.253 -1.007 1.624 sum -1.295 -14.687 16.831 22.376 Atomic orbital electron populations 1.21795 0.92419 1.04078 1.02203 1.20577 0.97410 0.85074 1.06284 1.28143 0.98556 1.02816 0.90770 1.66159 1.17278 1.05831 1.32183 1.20907 0.93648 0.90919 0.93991 1.20633 1.03391 0.96840 0.93676 1.25375 1.20716 1.01231 0.98139 1.16822 0.77137 0.85309 0.82355 1.90762 1.51262 1.45962 1.55457 1.45833 1.67478 1.16945 1.06130 1.21204 1.00415 0.84318 0.91653 1.22423 0.96653 0.98447 0.93564 0.89515 1.21796 0.93967 0.97198 0.85682 1.44616 1.24290 1.57077 1.09196 1.19524 1.01946 1.25428 0.90139 0.89491 1.25668 0.99810 0.99991 1.00480 1.70168 1.28347 1.37133 1.24390 0.85001 0.78270 0.77086 0.78920 1.18732 1.22070 1.22009 1.21596 0.87511 0.94130 0.93247 1.22880 0.80859 0.96943 0.95589 0.90482 1.86390 1.19000 1.43953 1.88316 1.83821 1.57495 1.02591 1.10302 0.92330 0.88954 0.93111 0.86867 0.87546 0.89748 0.89531 0.89463 0.75803 0.90640 0.90901 0.92709 0.95130 0.94389 0.96818 0.96161 0.75686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 71.98 0.71 -0.59 16 2 C -0.05 -0.52 6.51 29.85 0.19 -0.32 16 3 C 0.07 1.25 6.64 88.46 0.59 1.84 16 4 N -0.50 -11.13 10.50 -178.28 -1.87 -13.00 16 5 C 0.14 3.50 6.79 42.10 0.29 3.79 16 6 C -0.09 -1.90 9.70 71.24 0.69 -1.21 16 7 C -0.33 -8.09 6.48 23.88 0.15 -7.93 16 8 C 0.60 16.75 7.78 86.45 0.67 17.42 16 9 O -0.55 -18.24 14.27 -4.32 -0.06 -18.31 16 10 N -0.71 -18.40 5.50 -467.09 -2.57 -20.97 16 11 C 0.15 4.15 5.13 86.38 0.44 4.59 16 12 C -0.09 -2.98 2.77 -9.40 -0.03 -3.00 16 13 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 14 C 0.14 5.27 6.65 86.86 0.58 5.84 16 15 N -0.62 -31.03 3.39 -691.99 -2.35 -33.37 16 16 C -0.24 -13.16 10.28 84.03 0.86 -12.29 16 17 H 0.09 4.48 7.83 -2.91 -0.02 4.46 16 18 C -0.07 -3.71 5.49 84.86 0.47 -3.25 16 19 N -0.95 -56.24 10.31 21.65 0.22 -56.01 16 20 Si 0.98 44.83 29.55 68.60 2.03 46.86 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 C 0.16 7.70 5.15 86.73 0.45 8.15 16 25 C 0.10 3.49 3.80 31.78 0.12 3.61 16 26 H 0.08 2.50 8.04 -2.38 -0.02 2.48 16 27 O -0.57 -18.76 13.39 -148.98 -1.99 -20.75 16 28 S 0.20 3.54 22.31 -56.49 -1.26 2.28 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 2.18 6.01 -2.39 -0.01 2.16 16 37 H 0.41 9.24 7.66 -92.72 -0.71 8.53 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.07 2.08 7.96 -2.39 -0.02 2.06 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.03 1.15 7.91 -2.39 -0.02 1.13 16 42 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.01 0.73 7.51 -2.39 -0.02 0.71 16 44 H 0.02 1.11 7.30 -2.38 -0.02 1.09 16 45 H 0.39 9.98 9.12 -74.05 -0.68 9.30 16 Total: -1.00 -71.98 382.64 -2.02 -74.01 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.36 Total: 22.62 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 6.19 Total: 16.64 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -6.56 Total: -123.35 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -2.06 Total: -39.06 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.26 Total: 2.28 kcal Total: -71.98 -2.02 -74.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958476941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.948 kcal (2) G-P(sol) polarization free energy of solvation -71.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds