Wall clock time and date at job start Tue Mar 31 2020 22:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32558 * 121.64288 * 2 1 4 4 S 1.77238 * 105.31685 * 180.02562 * 3 2 1 5 5 C 1.72203 * 94.84632 * 359.81117 * 4 3 2 6 6 O 1.21826 * 127.06041 * 180.20214 * 5 4 3 7 7 N 1.34242 * 105.88816 * 0.32020 * 5 4 3 8 8 C 1.46494 * 121.38247 * 179.88414 * 7 5 4 9 9 C 1.50700 * 109.46999 * 269.71507 * 8 7 5 10 10 O 1.21279 * 120.00189 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99830 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99968 * 180.02562 * 11 9 8 13 13 H 1.08993 * 109.49472 * 35.06413 * 12 11 9 14 14 C 1.53194 * 109.49305 * 275.00266 * 12 11 9 15 15 N 1.46923 * 108.77930 * 294.67913 * 14 12 11 16 16 C 1.36935 * 120.63368 * 126.37148 * 15 14 12 17 17 H 1.07993 * 120.00527 * 207.86000 * 16 15 14 18 18 C 1.38815 * 119.99662 * 27.85625 * 16 15 14 19 19 N 1.31623 * 120.00073 * 17.13690 * 18 16 15 20 20 Si 1.86796 * 120.00109 * 197.13586 * 18 16 15 21 21 H 1.48503 * 109.47320 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47245 * 120.00179 * 20 18 16 23 23 H 1.48498 * 109.47297 * 239.99918 * 20 18 16 24 24 C 1.46925 * 118.73785 * 306.39969 * 15 14 12 25 25 C 1.53190 * 108.77886 * 53.60510 * 24 15 14 26 26 C 1.53031 * 109.49756 * 155.16658 * 12 11 9 27 27 H 1.09001 * 109.46161 * 178.60565 * 26 12 11 28 28 C 1.53002 * 109.45994 * 298.56441 * 26 12 11 29 29 H 1.09001 * 109.47010 * 269.98060 * 1 2 3 30 30 H 1.08993 * 109.47080 * 29.97736 * 1 2 3 31 31 H 1.08999 * 109.46879 * 149.98553 * 1 2 3 32 32 H 1.07999 * 127.34455 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.47197 * 29.71796 * 8 7 5 34 34 H 1.09002 * 109.47155 * 149.71597 * 8 7 5 35 35 H 0.96998 * 120.00119 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.59204 * 54.47241 * 14 12 11 37 37 H 1.09009 * 109.58303 * 174.75114 * 14 12 11 38 38 H 0.96993 * 120.00081 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.58697 * 173.39142 * 24 15 14 40 40 H 1.08999 * 109.58525 * 293.66928 * 24 15 14 41 41 H 1.09005 * 109.49831 * 65.31622 * 25 24 15 42 42 H 1.09002 * 109.50059 * 185.38397 * 25 24 15 43 43 H 1.08996 * 109.47216 * 60.00010 * 28 26 12 44 44 H 1.08998 * 109.47459 * 180.02562 * 28 26 12 45 45 H 1.09007 * 109.47277 * 300.00249 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9034 0.6303 -0.0008 5 6 3.5607 -1.0573 0.0046 6 8 4.3673 -1.9703 0.0097 7 7 2.2222 -1.1605 -0.0005 8 6 1.5578 -2.4661 -0.0006 9 6 1.3293 -2.9134 -1.4214 10 8 1.6868 -2.2110 -2.3432 11 7 0.7287 -4.0945 -1.6677 12 6 0.5071 -4.5297 -3.0490 13 1 1.3376 -4.1985 -3.6723 14 6 -0.7988 -3.9236 -3.5726 15 7 -1.9203 -4.4804 -2.8040 16 6 -2.8231 -3.6545 -2.1892 17 1 -3.3431 -3.9871 -1.3031 18 6 -3.0697 -2.3895 -2.7050 19 7 -2.7147 -2.1013 -3.9392 20 14 -3.9053 -1.0963 -1.6474 21 1 -4.2007 -1.6669 -0.3086 22 1 -3.0071 0.0768 -1.4978 23 1 -5.1721 -0.6703 -2.2948 24 6 -2.0545 -5.9403 -2.7070 25 6 -0.7346 -6.5237 -2.1929 26 6 0.4105 -6.0563 -3.0943 27 1 0.2210 -6.3780 -4.1183 28 6 1.7259 -6.6650 -2.6043 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8899 -0.5141 32 1 1.8152 2.1367 0.0004 33 1 2.1863 -3.1936 0.5129 34 1 0.6000 -2.3863 0.5137 35 1 0.4431 -4.6565 -0.9304 36 1 -0.7739 -2.8408 -3.4505 37 1 -0.9184 -4.1696 -4.6278 38 1 -2.8874 -1.2176 -4.2997 39 1 -2.8581 -6.1881 -2.0136 40 1 -2.2803 -6.3526 -3.6904 41 1 -0.5580 -6.1812 -1.1732 42 1 -0.7880 -7.6124 -2.2069 43 1 1.9161 -6.3432 -1.5804 44 1 1.6575 -7.7524 -2.6369 45 1 2.5415 -6.3332 -3.2469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968632552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:13 Heat of formation + Delta-G solvation = -14.964347 kcal Electronic energy + Delta-G solvation = -29239.870867 eV Core-core repulsion = 25385.065050 eV Total energy + Delta-G solvation = -3854.805817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.13554 -39.42904 -37.65999 -37.30333 -34.22135 -32.95202 -32.43138 -31.11325 -30.34545 -29.07124 -27.45048 -26.47034 -24.17434 -23.68478 -22.35278 -21.19351 -21.11894 -20.03656 -18.77048 -17.98505 -17.55425 -17.11896 -16.70038 -15.61440 -15.34744 -15.09689 -14.92051 -14.55623 -14.06665 -14.02669 -13.85720 -13.62080 -13.56636 -13.44895 -13.28090 -13.15389 -12.68269 -12.42228 -12.05457 -12.01660 -11.63279 -11.49505 -11.45821 -11.14956 -11.12439 -10.99380 -10.82431 -10.57233 -10.29152 -10.07635 -10.02653 -9.96590 -9.73972 -9.57201 -9.20135 -8.55511 -8.47313 -7.88972 -6.73043 -5.85227 -3.28423 0.99903 1.45701 1.81527 2.19946 2.74405 2.96263 3.24749 3.33514 3.36477 3.63119 4.39886 4.53025 4.80983 4.96634 5.07254 5.14666 5.17243 5.18710 5.28442 5.34632 5.41542 5.47834 5.48701 5.64829 5.83283 5.85397 5.88013 5.96132 6.10631 6.18243 6.23710 6.31353 6.38432 6.48499 6.58706 6.68697 6.75752 6.81241 6.91769 7.28330 7.33855 7.59094 7.71895 7.94415 8.37922 8.61738 9.12914 9.77180 10.33999 11.22532 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010625 B = 0.005234 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.742013 B = 5348.667368 C = 7378.031182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.123 3.877 3 C -0.245 4.245 4 S -0.005 6.005 5 C 0.488 3.512 6 O -0.478 6.478 7 N -0.512 5.512 8 C 0.079 3.921 9 C 0.499 3.501 10 O -0.531 6.531 11 N -0.692 5.692 12 C 0.127 3.873 13 H 0.075 0.925 14 C 0.161 3.839 15 N -0.587 5.587 16 C -0.254 4.254 17 H 0.064 0.936 18 C 0.006 3.994 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.290 1.290 24 C 0.142 3.858 25 C -0.128 4.128 26 C -0.094 4.094 27 H 0.078 0.922 28 C -0.144 4.144 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.191 0.809 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.396 0.604 36 H 0.097 0.903 37 H 0.025 0.975 38 H 0.254 0.746 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.137 -0.530 9.441 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.012 3.988 3 C -0.382 4.382 4 S 0.238 5.762 5 C 0.171 3.829 6 O -0.358 6.358 7 N -0.232 5.232 8 C -0.050 4.050 9 C 0.282 3.718 10 O -0.407 6.407 11 N -0.344 5.344 12 C 0.021 3.979 13 H 0.093 0.907 14 C 0.035 3.965 15 N -0.310 5.310 16 C -0.384 4.384 17 H 0.082 0.918 18 C -0.193 4.193 19 N -0.539 5.539 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.217 1.217 24 C 0.015 3.985 25 C -0.167 4.167 26 C -0.113 4.113 27 H 0.096 0.904 28 C -0.202 4.202 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.208 0.792 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.231 0.769 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.037 0.202 8.669 12.524 hybrid contribution -1.917 -0.292 0.662 2.049 sum 7.119 -0.089 9.330 11.736 Atomic orbital electron populations 1.20860 0.86294 1.05830 1.03639 1.19454 0.95925 0.84653 0.98737 1.24772 0.92768 1.01196 1.19513 1.84891 1.09012 1.01063 1.81278 1.21495 0.83550 0.95707 0.82167 1.90933 1.48717 1.42518 1.53661 1.45551 1.06203 1.06800 1.64667 1.21742 1.00994 0.84833 0.97463 1.20384 0.78652 0.82233 0.90531 1.90734 1.51118 1.53495 1.45397 1.45727 1.59233 1.19852 1.09538 1.21817 1.00824 0.93213 0.82000 0.90697 1.21180 0.82592 1.00269 0.92497 1.43991 1.27201 0.99156 1.60658 1.19124 1.18189 0.95892 1.05173 0.91800 1.25022 0.99450 0.99643 0.95203 1.70012 1.50364 1.20883 1.12647 0.86414 0.79164 0.82272 0.80105 1.20259 1.21197 1.21724 1.20937 0.93824 0.86047 0.97664 1.22072 0.96971 0.98981 0.98707 1.21313 0.94843 0.94618 1.00516 0.90402 1.21850 0.97306 0.99953 1.01080 0.89617 0.88987 0.89700 0.79201 0.86340 0.85944 0.76945 0.88507 0.95714 0.93595 0.92811 0.96426 0.92730 0.92732 0.93063 0.93088 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.30 36.01 0.34 -1.03 16 2 C 0.12 1.68 6.59 -82.51 -0.54 1.13 16 3 C -0.24 -2.97 11.24 28.82 0.32 -2.65 16 4 S 0.00 -0.07 22.97 -107.50 -2.47 -2.54 16 5 C 0.49 8.11 8.27 53.82 0.45 8.55 16 6 O -0.48 -9.08 17.55 5.08 0.09 -8.99 16 7 N -0.51 -7.75 2.09 -118.57 -0.25 -8.00 16 8 C 0.08 1.10 5.47 -5.20 -0.03 1.07 16 9 C 0.50 8.85 7.60 -10.98 -0.08 8.76 16 10 O -0.53 -11.73 16.09 5.56 0.09 -11.64 16 11 N -0.69 -11.41 4.25 -53.69 -0.23 -11.64 16 12 C 0.13 2.32 2.24 -67.81 -0.15 2.16 16 13 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 14 C 0.16 3.67 4.91 -3.71 -0.02 3.65 16 15 N -0.59 -13.29 2.91 -172.32 -0.50 -13.79 16 16 C -0.25 -6.37 9.58 -15.06 -0.14 -6.51 16 17 H 0.06 1.58 7.89 -52.49 -0.41 1.16 16 18 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 19 N -0.90 -25.10 11.19 55.49 0.62 -24.48 16 20 Si 0.89 20.03 29.59 -169.99 -5.03 15.00 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.14 2.66 6.52 -3.71 -0.02 2.63 16 25 C -0.13 -1.89 5.20 -26.61 -0.14 -2.02 16 26 C -0.09 -1.41 2.48 -90.58 -0.22 -1.63 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 C -0.14 -1.84 9.05 37.16 0.34 -1.50 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 31 H 0.08 1.32 6.70 -51.93 -0.35 0.97 16 32 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.12 1.43 7.80 -51.93 -0.40 1.02 16 34 H 0.12 1.39 6.83 -51.93 -0.35 1.04 16 35 H 0.40 5.62 6.64 -40.82 -0.27 5.35 16 36 H 0.10 2.59 6.04 -51.93 -0.31 2.28 16 37 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 0.77 6.40 -51.93 -0.33 0.44 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -32.19 374.12 -8.61 -40.81 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.57 Total: 6.94 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 0.00 Total: 12.69 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.36 Total: -57.90 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.18 Total: -20.63 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.47 Total: -2.54 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.19 -8.61 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968632552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.842 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds