Wall clock time and date at job start Tue Mar 31 2020 22:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32558 * 121.64288 * 2 1 4 4 S 1.77238 * 105.31685 * 180.02562 * 3 2 1 5 5 C 1.72203 * 94.84632 * 359.81117 * 4 3 2 6 6 O 1.21826 * 127.06041 * 180.20214 * 5 4 3 7 7 N 1.34242 * 105.88816 * 0.32020 * 5 4 3 8 8 C 1.46494 * 121.38247 * 179.88414 * 7 5 4 9 9 C 1.50700 * 109.46999 * 269.71507 * 8 7 5 10 10 O 1.21279 * 120.00189 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99830 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99968 * 180.02562 * 11 9 8 13 13 H 1.08993 * 109.49472 * 35.06413 * 12 11 9 14 14 C 1.53194 * 109.49305 * 275.00266 * 12 11 9 15 15 N 1.46923 * 108.77930 * 294.67913 * 14 12 11 16 16 C 1.36935 * 120.63368 * 126.37148 * 15 14 12 17 17 H 1.07993 * 120.00527 * 207.86000 * 16 15 14 18 18 C 1.38815 * 119.99662 * 27.85625 * 16 15 14 19 19 N 1.31623 * 120.00073 * 17.13690 * 18 16 15 20 20 Si 1.86796 * 120.00109 * 197.13586 * 18 16 15 21 21 H 1.48503 * 109.47320 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47245 * 120.00179 * 20 18 16 23 23 H 1.48498 * 109.47297 * 239.99918 * 20 18 16 24 24 C 1.46925 * 118.73785 * 306.39969 * 15 14 12 25 25 C 1.53190 * 108.77886 * 53.60510 * 24 15 14 26 26 C 1.53031 * 109.49756 * 155.16658 * 12 11 9 27 27 H 1.09001 * 109.46161 * 178.60565 * 26 12 11 28 28 C 1.53002 * 109.45994 * 298.56441 * 26 12 11 29 29 H 1.09001 * 109.47010 * 269.98060 * 1 2 3 30 30 H 1.08993 * 109.47080 * 29.97736 * 1 2 3 31 31 H 1.08999 * 109.46879 * 149.98553 * 1 2 3 32 32 H 1.07999 * 127.34455 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.47197 * 29.71796 * 8 7 5 34 34 H 1.09002 * 109.47155 * 149.71597 * 8 7 5 35 35 H 0.96998 * 120.00119 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.59204 * 54.47241 * 14 12 11 37 37 H 1.09009 * 109.58303 * 174.75114 * 14 12 11 38 38 H 0.96993 * 120.00081 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.58697 * 173.39142 * 24 15 14 40 40 H 1.08999 * 109.58525 * 293.66928 * 24 15 14 41 41 H 1.09005 * 109.49831 * 65.31622 * 25 24 15 42 42 H 1.09002 * 109.50059 * 185.38397 * 25 24 15 43 43 H 1.08996 * 109.47216 * 60.00010 * 28 26 12 44 44 H 1.08998 * 109.47459 * 180.02562 * 28 26 12 45 45 H 1.09007 * 109.47277 * 300.00249 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9034 0.6303 -0.0008 5 6 3.5607 -1.0573 0.0046 6 8 4.3673 -1.9703 0.0097 7 7 2.2222 -1.1605 -0.0005 8 6 1.5578 -2.4661 -0.0006 9 6 1.3293 -2.9134 -1.4214 10 8 1.6868 -2.2110 -2.3432 11 7 0.7287 -4.0945 -1.6677 12 6 0.5071 -4.5297 -3.0490 13 1 1.3376 -4.1985 -3.6723 14 6 -0.7988 -3.9236 -3.5726 15 7 -1.9203 -4.4804 -2.8040 16 6 -2.8231 -3.6545 -2.1892 17 1 -3.3431 -3.9871 -1.3031 18 6 -3.0697 -2.3895 -2.7050 19 7 -2.7147 -2.1013 -3.9392 20 14 -3.9053 -1.0963 -1.6474 21 1 -4.2007 -1.6669 -0.3086 22 1 -3.0071 0.0768 -1.4978 23 1 -5.1721 -0.6703 -2.2948 24 6 -2.0545 -5.9403 -2.7070 25 6 -0.7346 -6.5237 -2.1929 26 6 0.4105 -6.0563 -3.0943 27 1 0.2210 -6.3780 -4.1183 28 6 1.7259 -6.6650 -2.6043 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8899 -0.5141 32 1 1.8152 2.1367 0.0004 33 1 2.1863 -3.1936 0.5129 34 1 0.6000 -2.3863 0.5137 35 1 0.4431 -4.6565 -0.9304 36 1 -0.7739 -2.8408 -3.4505 37 1 -0.9184 -4.1696 -4.6278 38 1 -2.8874 -1.2176 -4.2997 39 1 -2.8581 -6.1881 -2.0136 40 1 -2.2803 -6.3526 -3.6904 41 1 -0.5580 -6.1812 -1.1732 42 1 -0.7880 -7.6124 -2.2069 43 1 1.9161 -6.3432 -1.5804 44 1 1.6575 -7.7524 -2.6369 45 1 2.5415 -6.3332 -3.2469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968632552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:12 Heat of formation + Delta-G solvation = -35.733159 kcal Electronic energy + Delta-G solvation = -29240.771470 eV Core-core repulsion = 25385.065050 eV Total energy + Delta-G solvation = -3855.706421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32012 -40.85540 -39.08184 -38.59210 -35.92333 -34.42104 -33.55974 -32.82040 -31.60156 -30.46950 -28.94406 -27.64146 -25.82206 -24.90838 -23.82822 -22.76501 -22.37850 -21.26010 -20.30738 -19.09787 -18.87953 -18.60405 -18.18364 -16.98757 -16.82055 -16.51118 -16.41775 -15.85598 -15.64047 -15.28674 -15.24514 -14.89598 -14.77458 -14.70027 -14.61585 -14.48626 -14.11272 -13.63122 -13.53386 -13.16324 -13.11889 -12.97940 -12.72676 -12.64536 -12.54585 -12.48116 -12.17471 -12.15376 -11.88178 -11.57362 -11.37388 -11.29141 -11.20855 -11.08351 -10.55215 -10.44427 -10.00186 -8.98854 -8.62377 -7.81431 -5.27483 -0.14815 0.35997 0.75819 1.04244 1.45958 1.49644 1.57951 1.59597 1.64146 2.31336 2.54759 3.34039 3.46956 3.67163 3.72205 3.76709 3.88296 3.97527 4.03607 4.11010 4.13377 4.50507 4.51606 4.56314 4.62396 4.64388 4.70973 4.77846 4.84353 4.90053 4.93791 5.07664 5.15721 5.16658 5.23528 5.25459 5.43616 5.50966 5.62745 5.65557 5.69229 5.72879 6.15021 6.42460 6.58168 7.17537 7.26302 7.90185 8.42983 9.24139 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010625 B = 0.005234 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.742013 B = 5348.667368 C = 7378.031182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.098 3.902 3 C -0.227 4.227 4 S 0.016 5.984 5 C 0.467 3.533 6 O -0.517 6.517 7 N -0.514 5.514 8 C 0.083 3.917 9 C 0.493 3.507 10 O -0.582 6.582 11 N -0.681 5.681 12 C 0.139 3.861 13 H 0.054 0.946 14 C 0.175 3.825 15 N -0.598 5.598 16 C -0.250 4.250 17 H 0.073 0.927 18 C -0.051 4.051 19 N -0.937 5.937 20 Si 0.950 3.050 21 H -0.256 1.256 22 H -0.279 1.279 23 H -0.305 1.305 24 C 0.135 3.865 25 C -0.114 4.114 26 C -0.088 4.088 27 H 0.072 0.928 28 C -0.136 4.136 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.226 0.774 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.410 0.590 36 H 0.053 0.947 37 H -0.010 1.010 38 H 0.244 0.756 39 H 0.060 0.940 40 H 0.008 0.992 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.028 -1.177 12.349 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.011 4.011 3 C -0.364 4.364 4 S 0.259 5.741 5 C 0.151 3.849 6 O -0.401 6.401 7 N -0.234 5.234 8 C -0.046 4.046 9 C 0.278 3.722 10 O -0.462 6.462 11 N -0.333 5.333 12 C 0.032 3.968 13 H 0.072 0.928 14 C 0.048 3.952 15 N -0.322 5.322 16 C -0.380 4.380 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.778 3.222 21 H -0.180 1.180 22 H -0.205 1.205 23 H -0.233 1.233 24 C 0.010 3.990 25 C -0.153 4.153 26 C -0.107 4.107 27 H 0.091 0.909 28 C -0.193 4.193 29 H 0.136 0.864 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.243 0.757 33 H 0.157 0.843 34 H 0.169 0.831 35 H 0.248 0.752 36 H 0.071 0.929 37 H 0.008 0.992 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.904 -0.481 11.635 14.659 hybrid contribution -1.937 -0.078 -0.316 1.964 sum 6.968 -0.559 11.319 13.303 Atomic orbital electron populations 1.20865 0.85522 1.04423 1.05276 1.19756 0.96522 0.84625 1.00215 1.25331 0.91522 1.02348 1.17167 1.84814 1.10100 0.98836 1.80365 1.21923 0.83889 0.96642 0.82486 1.90896 1.49669 1.43968 1.55545 1.45639 1.06008 1.07629 1.64115 1.21860 1.02826 0.85094 0.94777 1.21122 0.77525 0.81721 0.91783 1.90708 1.53159 1.54914 1.47405 1.45594 1.58667 1.19872 1.09149 1.21444 0.97167 0.95517 0.82642 0.92804 1.20808 0.85270 0.98029 0.91099 1.44180 1.26871 1.00851 1.60279 1.19483 1.17433 0.96125 1.04995 0.90933 1.25784 1.00881 1.01832 0.96105 1.70212 1.52772 1.20588 1.14752 0.85473 0.77364 0.80057 0.79294 1.17956 1.20466 1.23323 1.21143 0.96619 0.83641 0.97583 1.21947 0.93841 1.00774 0.98724 1.21265 0.96825 0.91778 1.00795 0.90934 1.21765 0.95109 1.01334 1.01084 0.86418 0.88591 0.92807 0.75732 0.84273 0.83081 0.75224 0.92859 0.99211 0.94714 0.92180 0.97406 0.91386 0.89264 0.92315 0.90485 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 9.30 71.24 0.66 -1.72 16 2 C 0.10 2.51 6.59 40.71 0.27 2.78 16 3 C -0.23 -4.94 11.24 66.67 0.75 -4.19 16 4 S 0.02 0.41 22.97 -56.49 -1.30 -0.88 16 5 C 0.47 15.32 8.27 129.87 1.07 16.39 16 6 O -0.52 -19.79 17.55 -4.75 -0.08 -19.87 16 7 N -0.51 -15.07 2.09 -647.52 -1.35 -16.42 16 8 C 0.08 2.20 5.47 85.63 0.47 2.67 16 9 C 0.49 17.58 7.60 87.66 0.67 18.24 16 10 O -0.58 -26.72 16.09 -3.02 -0.05 -26.77 16 11 N -0.68 -22.09 4.25 -442.17 -1.88 -23.98 16 12 C 0.14 5.15 2.24 45.07 0.10 5.25 16 13 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 14 C 0.18 8.35 4.91 86.36 0.42 8.78 16 15 N -0.60 -27.32 2.91 -699.10 -2.04 -29.35 16 16 C -0.25 -12.53 9.58 84.03 0.81 -11.73 16 17 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 18 C -0.05 -2.69 4.91 84.86 0.42 -2.28 16 19 N -0.94 -54.99 11.19 21.65 0.24 -54.75 16 20 Si 0.95 41.29 29.59 68.60 2.03 43.32 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.31 -13.93 7.11 99.48 0.71 -13.23 16 24 C 0.14 4.90 6.52 86.36 0.56 5.46 16 25 C -0.11 -3.01 5.20 30.67 0.16 -2.85 16 26 C -0.09 -2.50 2.48 -10.77 -0.03 -2.53 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 C -0.14 -3.07 9.05 71.98 0.65 -2.42 16 29 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.10 2.15 8.10 -2.39 -0.02 2.13 16 31 H 0.05 1.62 6.70 -2.39 -0.02 1.60 16 32 H 0.23 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.14 3.11 7.80 -2.39 -0.02 3.09 16 34 H 0.15 3.09 6.83 -2.39 -0.02 3.07 16 35 H 0.41 10.75 6.64 -92.71 -0.62 10.14 16 36 H 0.05 3.03 6.04 -2.39 -0.01 3.01 16 37 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 38 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 39 H 0.06 2.09 7.93 -2.39 -0.02 2.07 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.07 1.65 6.40 -2.38 -0.02 1.64 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.25 7.54 -2.39 -0.02 1.24 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -75.17 374.12 2.95 -72.22 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.40 Total: 24.63 kcal Atomic # 6 Polarization: 24.87 SS G_CDS: 6.98 Total: 31.86 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -5.03 Total: -124.50 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -0.13 Total: -46.64 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -1.30 Total: -0.88 kcal Total: -75.17 2.95 -72.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968632552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.482 kcal (2) G-P(sol) polarization free energy of solvation -75.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds