Wall clock time and date at job start Tue Mar 31 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00202 * 2 1 4 4 C 1.50700 * 109.47173 * 179.97438 * 3 2 1 5 5 N 1.29430 * 124.80681 * 90.02550 * 4 3 2 6 6 C 1.30942 * 117.36682 * 180.02562 * 5 4 3 7 7 C 1.50697 * 122.90405 * 180.02562 * 6 5 4 8 8 C 1.35662 * 114.18975 * 0.02562 * 6 5 4 9 9 C 1.46676 * 126.12950 * 180.02562 * 8 6 5 10 10 O 1.21685 * 120.00056 * 359.97438 * 9 8 6 11 11 N 1.34781 * 120.00343 * 179.97438 * 9 8 6 12 12 C 1.46499 * 120.00216 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.46852 * 325.00049 * 12 11 9 14 14 C 1.52993 * 109.47171 * 85.00326 * 12 11 9 15 15 C 1.53001 * 109.46708 * 205.00143 * 12 11 9 16 16 C 1.53955 * 113.73896 * 161.99728 * 15 12 11 17 17 N 1.47816 * 86.03640 * 222.08348 * 16 15 12 18 18 C 1.36934 * 134.45354 * 204.64801 * 17 16 15 19 19 H 1.08001 * 119.99583 * 179.87061 * 18 17 16 20 20 C 1.38812 * 120.00072 * 359.86186 * 18 17 16 21 21 N 1.31615 * 120.00178 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99598 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47511 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47090 * 120.00290 * 22 20 18 25 25 H 1.48502 * 109.46798 * 240.00016 * 22 20 18 26 26 C 1.47586 * 91.04989 * 24.55023 * 17 16 15 27 27 S 1.70955 * 124.80564 * 270.34088 * 4 3 2 28 28 H 1.09003 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47384 * 300.00092 * 1 2 3 30 30 H 1.08998 * 109.46999 * 60.00029 * 1 2 3 31 31 H 1.09000 * 109.47039 * 60.00282 * 3 2 1 32 32 H 1.09001 * 109.47082 * 299.99890 * 3 2 1 33 33 H 1.09005 * 109.46940 * 269.95512 * 7 6 5 34 34 H 1.08994 * 109.47117 * 29.95535 * 7 6 5 35 35 H 1.08994 * 109.47237 * 149.95910 * 7 6 5 36 36 H 0.97004 * 119.99549 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47098 * 295.81086 * 14 12 11 38 38 H 1.09000 * 109.47575 * 175.80929 * 14 12 11 39 39 H 1.09008 * 109.47315 * 55.80543 * 14 12 11 40 40 H 1.08997 * 112.94525 * 293.58906 * 15 12 11 41 41 H 1.09001 * 113.76698 * 336.35106 * 16 15 12 42 42 H 1.09001 * 113.76676 * 107.74455 * 16 15 12 43 43 H 0.96991 * 120.00127 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.76558 * 221.14959 * 26 17 16 45 45 H 1.08999 * 113.87180 * 89.76821 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2495 1.1283 -1.0618 6 6 5.5437 1.0252 -0.8917 7 6 6.5168 0.9490 -2.0398 8 6 5.9328 0.9930 0.4075 9 6 7.3119 0.8833 0.8948 10 8 8.2330 0.8109 0.1030 11 7 7.5590 0.8628 2.2197 12 6 8.9364 0.7527 2.7063 13 1 9.5099 0.1161 2.0326 14 6 9.5716 2.1435 2.7581 15 6 8.9343 0.1404 4.1085 16 6 10.3003 -0.4231 4.5407 17 7 9.5402 -1.5663 5.0886 18 6 9.7722 -2.4882 6.0742 19 1 9.0334 -3.2460 6.2895 20 6 10.9570 -2.4487 6.7965 21 7 11.8571 -1.5250 6.5344 22 14 11.2737 -3.7067 8.1405 23 1 10.1152 -4.6308 8.2367 24 1 12.4982 -4.4812 7.8150 25 1 11.4597 -3.0087 9.4380 26 6 8.4304 -1.3137 4.1491 27 16 4.4840 1.1013 1.4047 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.6705 -0.0940 -2.3171 34 1 6.1159 1.4964 -2.8928 35 1 7.4677 1.3891 -1.7400 36 1 6.8246 0.9202 2.8509 37 1 9.6408 2.5492 1.7488 38 1 10.5699 2.0713 3.1899 39 1 8.9567 2.8013 3.3726 40 1 8.4705 0.7866 4.8537 41 1 10.9504 -0.6871 3.7065 42 1 10.8025 0.1764 5.2999 43 1 12.6851 -1.4976 7.0388 44 1 7.4425 -1.4240 4.5963 45 1 8.5283 -1.8393 3.1992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970812173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:24 Heat of formation + Delta-G solvation = 18.670141 kcal Electronic energy + Delta-G solvation = -26630.707828 eV Core-core repulsion = 22777.360511 eV Total energy + Delta-G solvation = -3853.347317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61371 -39.53974 -38.31271 -37.90886 -34.90354 -32.73332 -32.20067 -30.81028 -29.15875 -28.19233 -27.48278 -26.50394 -24.83438 -24.09864 -23.13002 -22.35740 -20.75825 -20.02418 -18.88460 -18.32391 -17.14377 -17.07323 -16.70748 -16.29631 -15.95443 -15.62530 -15.36482 -14.79002 -14.53341 -14.22350 -14.02982 -13.95310 -13.61653 -13.24546 -13.15625 -12.85159 -12.68860 -12.57000 -12.29680 -12.08128 -11.89378 -11.63113 -11.56421 -11.41389 -11.24118 -10.90390 -10.69347 -10.38592 -10.35249 -10.17258 -10.04360 -9.83500 -9.77651 -9.68312 -9.43752 -9.11123 -8.89403 -8.79872 -6.87780 -5.77081 -3.09047 -0.09067 0.85617 1.27959 2.13171 3.03385 3.11430 3.25288 3.38839 3.44197 3.46732 3.84232 4.38437 4.44862 4.67271 4.71842 4.78419 4.86571 4.88935 4.93746 5.11173 5.17284 5.22372 5.37651 5.51994 5.54200 5.58838 5.62130 5.71708 5.78782 5.95223 6.04245 6.17100 6.25682 6.34466 6.42810 6.50178 6.53645 6.61407 6.75800 7.21709 7.30507 7.35125 7.49243 7.55880 7.97988 8.13738 9.04775 9.70828 10.59756 11.40345 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.002444 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.139450 B =11454.660272 C =12727.785924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.138 3.862 4 C 0.048 3.952 5 N -0.459 5.459 6 C 0.143 3.857 7 C -0.089 4.089 8 C -0.288 4.288 9 C 0.595 3.405 10 O -0.522 6.522 11 N -0.711 5.711 12 C 0.151 3.849 13 H 0.091 0.909 14 C -0.159 4.159 15 C -0.149 4.149 16 C 0.177 3.823 17 N -0.612 5.612 18 C -0.222 4.222 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.124 3.876 27 S 0.192 5.808 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.396 0.604 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.253 0.747 44 H 0.040 0.960 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.716 10.699 -13.586 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.059 3.941 4 C -0.227 4.227 5 N -0.175 5.175 6 C 0.005 3.995 7 C -0.148 4.148 8 C -0.412 4.412 9 C 0.380 3.620 10 O -0.400 6.400 11 N -0.361 5.361 12 C 0.047 3.953 13 H 0.109 0.891 14 C -0.217 4.217 15 C -0.169 4.169 16 C 0.051 3.949 17 N -0.338 5.338 18 C -0.349 4.349 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.002 4.002 27 S 0.449 5.551 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.229 0.771 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -20.274 10.338 -13.240 26.329 hybrid contribution 0.126 -0.622 0.323 0.712 sum -20.148 9.716 -12.917 25.830 Atomic orbital electron populations 1.22825 0.79761 1.03512 1.00388 1.87980 1.20490 1.26019 1.95533 1.20827 0.84260 0.86318 1.02745 1.26798 1.00486 1.03587 0.91820 1.66018 1.04589 1.15541 1.31345 1.20669 0.89666 0.95296 0.93846 1.20672 0.97092 1.03687 0.93318 1.25708 0.98466 1.19714 0.97326 1.16641 0.85586 0.76861 0.82923 1.90786 1.44153 1.50223 1.54874 1.46076 1.10449 1.73917 1.05683 1.21203 0.80608 0.97259 0.96220 0.89054 1.22121 1.01580 0.96293 1.01696 1.23886 1.03000 0.96429 0.93548 1.22231 0.89939 0.87400 0.95347 1.45991 1.17139 1.34504 1.36174 1.19069 1.01600 1.06754 1.07512 0.90252 1.24782 0.96478 0.99177 1.00098 1.69810 1.08929 1.35115 1.43017 0.86052 0.77774 0.80524 0.81449 1.20492 1.21739 1.21696 1.22544 0.92959 0.91581 0.93088 1.83868 0.96433 1.64156 1.10603 0.88973 0.93549 0.93544 0.90543 0.89754 0.89976 0.90831 0.87959 0.77056 0.92657 0.90793 0.92740 0.89256 0.95331 0.90619 0.93668 0.94135 0.94968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.47 10.69 -35.23 -0.38 -3.85 16 3 C 0.14 1.04 6.51 36.01 0.23 1.28 16 4 C 0.05 0.51 7.02 -13.29 -0.09 0.41 16 5 N -0.46 -5.72 10.50 -7.70 -0.08 -5.80 16 6 C 0.14 1.85 6.79 -83.89 -0.57 1.28 16 7 C -0.09 -1.02 9.69 36.00 0.35 -0.67 16 8 C -0.29 -3.67 6.48 -37.10 -0.24 -3.91 16 9 C 0.60 8.60 7.74 -12.85 -0.10 8.50 16 10 O -0.52 -8.80 13.93 5.20 0.07 -8.73 16 11 N -0.71 -9.57 4.94 -55.12 -0.27 -9.85 16 12 C 0.15 2.31 2.29 -67.93 -0.16 2.15 16 13 H 0.09 1.59 7.49 -51.93 -0.39 1.20 16 14 C -0.16 -2.17 9.46 37.15 0.35 -1.82 16 15 C -0.15 -2.64 3.35 -89.69 -0.30 -2.94 16 16 C 0.18 4.06 6.90 -2.83 -0.02 4.04 16 17 N -0.61 -15.70 3.70 -177.65 -0.66 -16.36 16 18 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -27.29 11.39 55.49 0.63 -26.66 16 22 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.12 2.52 8.38 -2.96 -0.02 2.50 16 27 S 0.19 1.89 22.31 -107.50 -2.40 -0.50 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 1.28 6.01 -51.93 -0.31 0.97 16 36 H 0.40 4.58 7.79 -40.82 -0.32 4.26 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.03 7.99 -51.93 -0.42 0.62 16 39 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 42 H 0.08 1.91 7.16 -51.93 -0.37 1.54 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -34.03 388.42 -8.80 -42.83 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.84 Total: 0.54 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 0.29 Total: 5.32 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.38 Total: -58.66 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.30 Total: -12.58 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.40 Total: -0.50 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.03 -8.80 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970812173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.501 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds