Wall clock time and date at job start Tue Mar 31 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00202 * 2 1 4 4 C 1.50700 * 109.47173 * 179.97438 * 3 2 1 5 5 N 1.29430 * 124.80681 * 90.02550 * 4 3 2 6 6 C 1.30942 * 117.36682 * 180.02562 * 5 4 3 7 7 C 1.50697 * 122.90405 * 180.02562 * 6 5 4 8 8 C 1.35662 * 114.18975 * 0.02562 * 6 5 4 9 9 C 1.46676 * 126.12950 * 180.02562 * 8 6 5 10 10 O 1.21685 * 120.00056 * 359.97438 * 9 8 6 11 11 N 1.34781 * 120.00343 * 179.97438 * 9 8 6 12 12 C 1.46499 * 120.00216 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.46852 * 325.00049 * 12 11 9 14 14 C 1.52993 * 109.47171 * 85.00326 * 12 11 9 15 15 C 1.53001 * 109.46708 * 205.00143 * 12 11 9 16 16 C 1.53955 * 113.73896 * 161.99728 * 15 12 11 17 17 N 1.47816 * 86.03640 * 222.08348 * 16 15 12 18 18 C 1.36934 * 134.45354 * 204.64801 * 17 16 15 19 19 H 1.08001 * 119.99583 * 179.87061 * 18 17 16 20 20 C 1.38812 * 120.00072 * 359.86186 * 18 17 16 21 21 N 1.31615 * 120.00178 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99598 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47511 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47090 * 120.00290 * 22 20 18 25 25 H 1.48502 * 109.46798 * 240.00016 * 22 20 18 26 26 C 1.47586 * 91.04989 * 24.55023 * 17 16 15 27 27 S 1.70955 * 124.80564 * 270.34088 * 4 3 2 28 28 H 1.09003 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47384 * 300.00092 * 1 2 3 30 30 H 1.08998 * 109.46999 * 60.00029 * 1 2 3 31 31 H 1.09000 * 109.47039 * 60.00282 * 3 2 1 32 32 H 1.09001 * 109.47082 * 299.99890 * 3 2 1 33 33 H 1.09005 * 109.46940 * 269.95512 * 7 6 5 34 34 H 1.08994 * 109.47117 * 29.95535 * 7 6 5 35 35 H 1.08994 * 109.47237 * 149.95910 * 7 6 5 36 36 H 0.97004 * 119.99549 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47098 * 295.81086 * 14 12 11 38 38 H 1.09000 * 109.47575 * 175.80929 * 14 12 11 39 39 H 1.09008 * 109.47315 * 55.80543 * 14 12 11 40 40 H 1.08997 * 112.94525 * 293.58906 * 15 12 11 41 41 H 1.09001 * 113.76698 * 336.35106 * 16 15 12 42 42 H 1.09001 * 113.76676 * 107.74455 * 16 15 12 43 43 H 0.96991 * 120.00127 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.76558 * 221.14959 * 26 17 16 45 45 H 1.08999 * 113.87180 * 89.76821 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2495 1.1283 -1.0618 6 6 5.5437 1.0252 -0.8917 7 6 6.5168 0.9490 -2.0398 8 6 5.9328 0.9930 0.4075 9 6 7.3119 0.8833 0.8948 10 8 8.2330 0.8109 0.1030 11 7 7.5590 0.8628 2.2197 12 6 8.9364 0.7527 2.7063 13 1 9.5099 0.1161 2.0326 14 6 9.5716 2.1435 2.7581 15 6 8.9343 0.1404 4.1085 16 6 10.3003 -0.4231 4.5407 17 7 9.5402 -1.5663 5.0886 18 6 9.7722 -2.4882 6.0742 19 1 9.0334 -3.2460 6.2895 20 6 10.9570 -2.4487 6.7965 21 7 11.8571 -1.5250 6.5344 22 14 11.2737 -3.7067 8.1405 23 1 10.1152 -4.6308 8.2367 24 1 12.4982 -4.4812 7.8150 25 1 11.4597 -3.0087 9.4380 26 6 8.4304 -1.3137 4.1491 27 16 4.4840 1.1013 1.4047 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.6705 -0.0940 -2.3171 34 1 6.1159 1.4964 -2.8928 35 1 7.4677 1.3891 -1.7400 36 1 6.8246 0.9202 2.8509 37 1 9.6408 2.5492 1.7488 38 1 10.5699 2.0713 3.1899 39 1 8.9567 2.8013 3.3726 40 1 8.4705 0.7866 4.8537 41 1 10.9504 -0.6871 3.7065 42 1 10.8025 0.1764 5.2999 43 1 12.6851 -1.4976 7.0388 44 1 7.4425 -1.4240 4.5963 45 1 8.5283 -1.8393 3.1992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970812173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:24 Heat of formation + Delta-G solvation = -5.303221 kcal Electronic energy + Delta-G solvation = -26631.747391 eV Core-core repulsion = 22777.360511 eV Total energy + Delta-G solvation = -3854.386880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59616 -40.69851 -39.56360 -38.77007 -36.27860 -34.19018 -33.55910 -32.12595 -29.81411 -29.46154 -29.05420 -26.97430 -26.56391 -25.74470 -23.96264 -23.62913 -22.07861 -21.32220 -20.22996 -19.20078 -18.78355 -18.04468 -17.64100 -17.31318 -16.85653 -16.64338 -16.51382 -16.30742 -15.82492 -15.56765 -15.31365 -15.02713 -14.85469 -14.67430 -14.11358 -13.92090 -13.55605 -13.43534 -13.33542 -13.28720 -13.24439 -13.08833 -12.95835 -12.70963 -12.42984 -12.37580 -12.34654 -12.00563 -11.81192 -11.59707 -11.26331 -11.20209 -10.88295 -10.82142 -10.74730 -10.66266 -10.17300 -9.87796 -8.92752 -7.91162 -5.24551 -0.96651 0.03618 0.42390 1.22214 1.45360 1.46609 1.56683 1.94911 2.03009 2.46785 2.59378 3.20233 3.29026 3.37346 3.59109 3.74085 3.78996 3.93663 4.01577 4.17588 4.25254 4.33254 4.42904 4.53306 4.55759 4.60025 4.64585 4.69274 4.75212 4.81282 4.84976 4.85591 4.90887 4.93901 5.05572 5.24549 5.26722 5.31092 5.45004 5.54019 5.63606 5.93680 6.04688 6.34680 6.50603 6.92008 7.04253 7.60135 8.55653 9.26060 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.002444 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.139450 B =11454.660272 C =12727.785924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.134 3.866 4 C 0.047 3.953 5 N -0.482 5.482 6 C 0.137 3.863 7 C -0.086 4.086 8 C -0.318 4.318 9 C 0.597 3.403 10 O -0.553 6.553 11 N -0.703 5.703 12 C 0.163 3.837 13 H 0.068 0.932 14 C -0.152 4.152 15 C -0.111 4.111 16 C 0.172 3.828 17 N -0.644 5.644 18 C -0.235 4.235 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.978 3.022 23 H -0.266 1.266 24 H -0.294 1.294 25 H -0.289 1.289 26 C 0.125 3.875 27 S 0.247 5.753 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.407 0.593 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.013 0.987 42 H 0.049 0.951 43 H 0.249 0.751 44 H 0.061 0.939 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.527 11.263 -13.121 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.055 3.945 4 C -0.228 4.228 5 N -0.199 5.199 6 C -0.002 4.002 7 C -0.145 4.145 8 C -0.442 4.442 9 C 0.383 3.617 10 O -0.433 6.433 11 N -0.354 5.354 12 C 0.058 3.942 13 H 0.086 0.914 14 C -0.211 4.211 15 C -0.131 4.131 16 C 0.047 3.953 17 N -0.370 5.370 18 C -0.363 4.363 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.807 3.193 23 H -0.190 1.190 24 H -0.222 1.222 25 H -0.216 1.216 26 C 0.000 4.000 27 S 0.505 5.495 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.243 0.757 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.031 0.969 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -23.150 10.908 -12.772 28.601 hybrid contribution 0.876 -0.810 0.129 1.200 sum -22.274 10.098 -12.644 27.531 Atomic orbital electron populations 1.23017 0.77905 1.04266 1.01794 1.87923 1.22567 1.26850 1.95838 1.21089 0.82275 0.86305 1.04850 1.27466 1.01982 1.01538 0.91782 1.66086 1.04409 1.17003 1.32392 1.20862 0.90215 0.94962 0.94207 1.20627 0.96497 1.03668 0.93719 1.25561 0.98732 1.21691 0.98236 1.16822 0.86123 0.76096 0.82677 1.90772 1.45403 1.51534 1.55580 1.45856 1.09906 1.73811 1.05811 1.20863 0.81627 0.97708 0.93975 0.91359 1.22056 1.01495 0.95386 1.02118 1.23484 0.98741 0.95550 0.95282 1.22132 0.92012 0.87131 0.94069 1.46420 1.19203 1.34627 1.36746 1.19455 1.01680 1.07080 1.08087 0.89963 1.25632 0.96517 1.01286 1.02661 1.69992 1.09176 1.36815 1.44204 0.85010 0.77596 0.78263 0.78454 1.19000 1.22171 1.21567 1.22690 0.92543 0.92819 0.91935 1.83581 0.94067 1.62848 1.09008 0.88653 0.91799 0.92460 0.87465 0.88618 0.90107 0.89426 0.89241 0.75663 0.92627 0.91377 0.90724 0.87488 0.96889 0.93292 0.94196 0.92109 0.95079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.55 10.69 -148.98 -1.59 -8.14 16 3 C 0.13 1.65 6.51 71.24 0.46 2.11 16 4 C 0.05 0.88 7.02 88.46 0.62 1.50 16 5 N -0.48 -11.39 10.50 -178.29 -1.87 -13.26 16 6 C 0.14 3.43 6.79 42.09 0.29 3.71 16 7 C -0.09 -1.99 9.69 71.23 0.69 -1.30 16 8 C -0.32 -7.76 6.48 23.88 0.15 -7.61 16 9 C 0.60 16.84 7.74 86.45 0.67 17.51 16 10 O -0.55 -18.82 13.93 -4.30 -0.06 -18.88 16 11 N -0.70 -17.87 4.94 -446.52 -2.21 -20.08 16 12 C 0.16 4.86 2.29 44.99 0.10 4.96 16 13 H 0.07 2.40 7.49 -2.39 -0.02 2.39 16 14 C -0.15 -4.01 9.46 71.98 0.68 -3.33 16 15 C -0.11 -3.82 3.35 -10.13 -0.03 -3.86 16 16 C 0.17 8.08 6.90 86.44 0.60 8.68 16 17 N -0.64 -33.15 3.70 -715.97 -2.65 -35.80 16 18 C -0.23 -13.28 10.70 84.03 0.90 -12.38 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 20 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 21 N -0.95 -57.70 11.39 21.65 0.25 -57.46 16 22 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 C 0.13 4.94 8.38 86.49 0.72 5.66 16 27 S 0.25 4.26 22.31 -56.49 -1.26 3.00 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 2.30 6.01 -2.39 -0.01 2.29 16 36 H 0.41 8.39 7.79 -92.70 -0.72 7.67 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.88 7.99 -2.39 -0.02 1.86 16 39 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.01 0.65 8.04 -2.39 -0.02 0.63 16 42 H 0.05 2.54 7.16 -2.39 -0.02 2.53 16 43 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.03 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -74.63 388.42 0.49 -74.14 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.28 Total: 14.78 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 7.57 Total: 13.68 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -6.48 Total: -126.60 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -1.65 Total: -27.02 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.26 Total: 3.00 kcal Total: -74.63 0.49 -74.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970812173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.839 kcal (2) G-P(sol) polarization free energy of solvation -74.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds