Wall clock time and date at job start Tue Mar 31 2020 22:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00554 * 2 1 4 4 C 1.50698 * 109.47344 * 180.02562 * 3 2 1 5 5 N 1.29428 * 124.80604 * 90.02965 * 4 3 2 6 6 C 1.30933 * 117.36387 * 179.97438 * 5 4 3 7 7 C 1.50702 * 122.90263 * 180.02562 * 6 5 4 8 8 C 1.35658 * 114.19270 * 359.97438 * 6 5 4 9 9 C 1.46691 * 126.12905 * 180.02562 * 8 6 5 10 10 O 1.21687 * 119.99943 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99946 * 179.97438 * 9 8 6 12 12 C 1.47026 * 125.64616 * 0.02648 * 11 9 8 13 13 C 1.54330 * 107.26845 * 181.02128 * 12 11 9 14 14 C 1.55158 * 102.94183 * 22.19350 * 13 12 11 15 15 H 1.09000 * 111.00656 * 82.61054 * 14 13 12 16 16 N 1.46504 * 111.00038 * 206.42633 * 14 13 12 17 17 C 1.46494 * 120.00269 * 59.99712 * 16 14 13 18 18 C 1.36937 * 119.99693 * 239.99850 * 16 14 13 19 19 H 1.08002 * 120.00282 * 23.24387 * 18 16 14 20 20 C 1.38809 * 120.00047 * 203.24908 * 18 16 14 21 21 N 1.31618 * 120.00280 * 13.75558 * 20 18 16 22 22 Si 1.86803 * 119.99933 * 193.75820 * 20 18 16 23 23 H 1.48506 * 109.46867 * 89.99970 * 22 20 18 24 24 H 1.48498 * 109.46888 * 209.99522 * 22 20 18 25 25 H 1.48497 * 109.47254 * 329.99903 * 22 20 18 26 26 C 1.47426 * 125.64936 * 179.71250 * 11 9 8 27 27 S 1.70954 * 124.80150 * 269.72286 * 4 3 2 28 28 H 1.08996 * 109.47307 * 59.99647 * 1 2 3 29 29 H 1.09000 * 109.47541 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46810 * 299.99710 * 1 2 3 31 31 H 1.08997 * 109.46936 * 300.00960 * 3 2 1 32 32 H 1.09007 * 109.46634 * 59.99936 * 3 2 1 33 33 H 1.08993 * 109.47949 * 90.02241 * 7 6 5 34 34 H 1.09010 * 109.46864 * 210.02533 * 7 6 5 35 35 H 1.09006 * 109.47208 * 330.01749 * 7 6 5 36 36 H 1.08995 * 109.88054 * 300.43712 * 12 11 9 37 37 H 1.08999 * 109.88604 * 61.45046 * 12 11 9 38 38 H 1.08997 * 110.71767 * 140.55457 * 13 12 11 39 39 H 1.08999 * 110.72216 * 263.65099 * 13 12 11 40 40 H 1.08998 * 109.47151 * 95.15898 * 17 16 14 41 41 H 1.08996 * 109.47289 * 215.15716 * 17 16 14 42 42 H 1.09004 * 109.47417 * 335.16038 * 17 16 14 43 43 H 0.96997 * 120.00530 * 180.02562 * 21 20 18 44 44 H 1.09001 * 110.36845 * 274.75065 * 26 11 9 45 45 H 1.09005 * 110.36398 * 37.07340 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2487 1.1287 -1.0637 6 6 5.5430 1.0265 -0.8946 7 6 6.5152 0.9508 -2.0436 8 6 5.9333 0.9957 0.4042 9 6 7.3131 0.8873 0.8904 10 8 8.2336 0.8156 0.0977 11 7 7.5613 0.8682 2.2149 12 6 6.5485 0.9477 3.2777 13 6 7.2968 0.9158 4.6271 14 6 8.7236 1.3904 4.2444 15 1 8.7739 2.4781 4.1964 16 7 9.7209 0.8620 5.1786 17 6 9.8852 -0.5854 5.3334 18 6 10.4993 1.7213 5.9072 19 1 10.1606 2.7295 6.0951 20 6 11.7239 1.2966 6.4041 21 7 12.2629 0.1807 5.9607 22 14 12.6068 2.3089 7.7023 23 1 12.1834 1.8596 9.0529 24 1 14.0737 2.1281 7.5578 25 1 12.2653 3.7435 7.5282 26 6 8.8928 0.7576 2.8381 27 16 4.4863 1.1157 1.4027 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 1.6887 1.8463 0.8901 33 1 6.8307 1.9569 -2.3196 34 1 7.3855 0.3661 -1.7453 35 1 6.0327 0.4744 -2.8971 36 1 5.9878 1.8780 3.1866 37 1 5.8698 0.0976 3.2074 38 1 6.8394 1.6038 5.3380 39 1 7.3196 -0.0960 5.0317 40 1 10.6922 -0.9306 4.6871 41 1 10.1274 -0.8147 6.3711 42 1 8.9583 -1.0880 5.0570 43 1 13.1184 -0.1162 6.3082 44 1 9.1862 -0.2887 2.9230 45 1 9.6301 1.3134 2.2587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980281562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:35 Heat of formation + Delta-G solvation = 2.490405 kcal Electronic energy + Delta-G solvation = -27124.831633 eV Core-core repulsion = 23270.782710 eV Total energy + Delta-G solvation = -3854.048923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48595 -39.55171 -38.22117 -37.37351 -34.90604 -32.62542 -31.78052 -29.98694 -29.09954 -28.89662 -27.43103 -26.45652 -26.10335 -23.88162 -22.99577 -22.46982 -21.16940 -19.41666 -18.58966 -18.30134 -17.13342 -17.02658 -16.75994 -16.19005 -15.95974 -15.92228 -15.14545 -14.95095 -14.54019 -14.07692 -13.94465 -13.52062 -13.43903 -13.15747 -12.95545 -12.70687 -12.61033 -12.50596 -12.44410 -12.39901 -12.07243 -11.85215 -11.64574 -11.39759 -10.96461 -10.87841 -10.56153 -10.55118 -10.35749 -10.29883 -9.99762 -9.95374 -9.90855 -9.68424 -9.58959 -9.03361 -8.64317 -8.39154 -6.86545 -5.81010 -3.29559 0.02234 0.99057 1.41331 2.22836 3.01763 3.14801 3.31856 3.34468 3.41058 3.42437 3.92335 4.41519 4.46430 4.53504 4.78875 4.85650 4.86228 4.90264 4.93989 4.98656 5.12767 5.23097 5.24018 5.36579 5.53456 5.61824 5.67680 5.69873 5.78981 5.81104 5.90520 6.21243 6.26455 6.28603 6.41419 6.53836 6.55174 6.70214 6.79331 7.27326 7.42819 7.61613 7.65617 7.73643 8.17299 8.30237 9.13181 9.75202 10.23861 11.23186 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.002499 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.163970 B =11202.478901 C =12001.084465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.027 3.973 5 N -0.461 5.461 6 C 0.141 3.859 7 C -0.088 4.088 8 C -0.284 4.284 9 C 0.604 3.396 10 O -0.525 6.525 11 N -0.607 5.607 12 C 0.090 3.910 13 C -0.148 4.148 14 C 0.174 3.826 15 H 0.080 0.920 16 N -0.583 5.583 17 C 0.157 3.843 18 C -0.263 4.263 19 H 0.071 0.929 20 C 0.006 3.994 21 N -0.902 5.902 22 Si 0.908 3.092 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.089 3.911 27 S 0.209 5.791 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.043 0.957 42 H 0.003 0.997 43 H 0.254 0.746 44 H 0.072 0.928 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.836 1.531 -9.758 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.248 4.248 5 N -0.177 5.177 6 C 0.002 3.998 7 C -0.147 4.147 8 C -0.408 4.408 9 C 0.391 3.609 10 O -0.404 6.404 11 N -0.340 5.340 12 C -0.034 4.034 13 C -0.188 4.188 14 C 0.063 3.937 15 H 0.099 0.901 16 N -0.303 5.303 17 C 0.013 3.987 18 C -0.393 4.393 19 H 0.089 0.911 20 C -0.193 4.193 21 N -0.546 5.546 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.034 4.034 27 S 0.468 5.532 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.587 1.280 -9.555 24.558 hybrid contribution 0.707 0.569 -0.025 0.908 sum -21.880 1.849 -9.580 23.957 Atomic orbital electron populations 1.22815 0.79915 1.03400 1.00364 1.87972 1.20364 1.26213 1.95523 1.20801 0.84535 0.86125 1.02542 1.27049 1.00641 1.03621 0.93468 1.66040 1.04514 1.15359 1.31792 1.20622 0.89801 0.95594 0.93743 1.20657 0.96800 1.03865 0.93359 1.25644 0.98286 1.19576 0.97277 1.16275 0.85811 0.77504 0.81286 1.90790 1.44340 1.51368 1.53937 1.48370 1.10400 1.71226 1.03974 1.22191 0.91451 1.00918 0.88885 1.23213 0.98510 1.03408 0.93672 1.21515 0.88152 0.97203 0.86862 0.90140 1.43863 1.40240 1.02664 1.43539 1.20833 0.94977 0.82278 1.00617 1.19207 0.97794 0.95857 1.26395 0.91139 1.25076 0.96087 0.97800 1.00370 1.70066 1.17884 1.23492 1.43135 0.86212 0.78771 0.79675 0.81594 1.21394 1.21696 1.20398 1.23225 0.82233 1.02236 0.95733 1.84177 0.95709 1.64144 1.09206 0.93585 0.89061 0.93602 0.90027 0.90675 0.90127 0.88035 0.90853 0.91397 0.91502 0.90211 0.90185 0.94748 0.93826 0.97898 0.93534 0.90933 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.67 10.69 -35.23 -0.38 -4.04 16 3 C 0.14 1.17 6.51 36.00 0.23 1.40 16 4 C 0.03 0.31 7.02 -13.29 -0.09 0.22 16 5 N -0.46 -6.28 10.50 -7.71 -0.08 -6.36 16 6 C 0.14 2.01 6.79 -83.90 -0.57 1.44 16 7 C -0.09 -1.13 9.69 36.01 0.35 -0.78 16 8 C -0.28 -4.13 6.40 -37.09 -0.24 -4.37 16 9 C 0.60 10.28 7.81 -12.85 -0.10 10.18 16 10 O -0.53 -10.25 14.52 5.20 0.08 -10.17 16 11 N -0.61 -9.96 3.32 -171.91 -0.57 -10.53 16 12 C 0.09 1.21 5.19 -3.06 -0.02 1.19 16 13 C -0.15 -2.23 6.49 -24.89 -0.16 -2.39 16 14 C 0.17 3.32 3.55 -65.66 -0.23 3.09 16 15 H 0.08 1.56 7.96 -51.93 -0.41 1.14 16 16 N -0.58 -13.75 2.96 -170.90 -0.51 -14.25 16 17 C 0.16 3.66 7.56 59.84 0.45 4.12 16 18 C -0.26 -6.89 9.60 -15.06 -0.14 -7.04 16 19 H 0.07 1.80 7.87 -52.49 -0.41 1.38 16 20 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 21 N -0.90 -25.57 10.77 55.49 0.60 -24.98 16 22 Si 0.91 21.23 29.58 -169.99 -5.03 16.20 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 C 0.09 1.69 6.46 -2.41 -0.02 1.67 16 27 S 0.21 2.33 18.64 -107.50 -2.00 0.32 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.45 6.01 -51.92 -0.31 1.14 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.79 6.86 -51.93 -0.36 0.44 16 37 H 0.07 0.81 7.02 -51.93 -0.36 0.44 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.25 6.47 -51.93 -0.34 0.92 16 40 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 41 H 0.04 1.09 7.38 -51.93 -0.38 0.71 16 42 H 0.00 0.05 6.37 -51.93 -0.33 -0.28 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.07 1.45 6.96 -51.93 -0.36 1.09 16 45 H 0.08 1.59 8.03 -51.93 -0.42 1.18 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -31.84 373.18 -8.37 -40.20 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.59 Total: -2.11 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 0.49 Total: 10.10 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.56 Total: -56.12 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.30 Total: -14.22 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.00 Total: 0.32 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.84 -8.37 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980281562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.693 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds