Wall clock time and date at job start Tue Mar 31 2020 22:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00554 * 2 1 4 4 C 1.50698 * 109.47344 * 180.02562 * 3 2 1 5 5 N 1.29428 * 124.80604 * 90.02965 * 4 3 2 6 6 C 1.30933 * 117.36387 * 179.97438 * 5 4 3 7 7 C 1.50702 * 122.90263 * 180.02562 * 6 5 4 8 8 C 1.35658 * 114.19270 * 359.97438 * 6 5 4 9 9 C 1.46691 * 126.12905 * 180.02562 * 8 6 5 10 10 O 1.21687 * 119.99943 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99946 * 179.97438 * 9 8 6 12 12 C 1.47026 * 125.64616 * 0.02648 * 11 9 8 13 13 C 1.54330 * 107.26845 * 181.02128 * 12 11 9 14 14 C 1.55158 * 102.94183 * 22.19350 * 13 12 11 15 15 H 1.09000 * 111.00656 * 82.61054 * 14 13 12 16 16 N 1.46504 * 111.00038 * 206.42633 * 14 13 12 17 17 C 1.46494 * 120.00269 * 59.99712 * 16 14 13 18 18 C 1.36937 * 119.99693 * 239.99850 * 16 14 13 19 19 H 1.08002 * 120.00282 * 23.24387 * 18 16 14 20 20 C 1.38809 * 120.00047 * 203.24908 * 18 16 14 21 21 N 1.31618 * 120.00280 * 13.75558 * 20 18 16 22 22 Si 1.86803 * 119.99933 * 193.75820 * 20 18 16 23 23 H 1.48506 * 109.46867 * 89.99970 * 22 20 18 24 24 H 1.48498 * 109.46888 * 209.99522 * 22 20 18 25 25 H 1.48497 * 109.47254 * 329.99903 * 22 20 18 26 26 C 1.47426 * 125.64936 * 179.71250 * 11 9 8 27 27 S 1.70954 * 124.80150 * 269.72286 * 4 3 2 28 28 H 1.08996 * 109.47307 * 59.99647 * 1 2 3 29 29 H 1.09000 * 109.47541 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46810 * 299.99710 * 1 2 3 31 31 H 1.08997 * 109.46936 * 300.00960 * 3 2 1 32 32 H 1.09007 * 109.46634 * 59.99936 * 3 2 1 33 33 H 1.08993 * 109.47949 * 90.02241 * 7 6 5 34 34 H 1.09010 * 109.46864 * 210.02533 * 7 6 5 35 35 H 1.09006 * 109.47208 * 330.01749 * 7 6 5 36 36 H 1.08995 * 109.88054 * 300.43712 * 12 11 9 37 37 H 1.08999 * 109.88604 * 61.45046 * 12 11 9 38 38 H 1.08997 * 110.71767 * 140.55457 * 13 12 11 39 39 H 1.08999 * 110.72216 * 263.65099 * 13 12 11 40 40 H 1.08998 * 109.47151 * 95.15898 * 17 16 14 41 41 H 1.08996 * 109.47289 * 215.15716 * 17 16 14 42 42 H 1.09004 * 109.47417 * 335.16038 * 17 16 14 43 43 H 0.96997 * 120.00530 * 180.02562 * 21 20 18 44 44 H 1.09001 * 110.36845 * 274.75065 * 26 11 9 45 45 H 1.09005 * 110.36398 * 37.07340 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2487 1.1287 -1.0637 6 6 5.5430 1.0265 -0.8946 7 6 6.5152 0.9508 -2.0436 8 6 5.9333 0.9957 0.4042 9 6 7.3131 0.8873 0.8904 10 8 8.2336 0.8156 0.0977 11 7 7.5613 0.8682 2.2149 12 6 6.5485 0.9477 3.2777 13 6 7.2968 0.9158 4.6271 14 6 8.7236 1.3904 4.2444 15 1 8.7739 2.4781 4.1964 16 7 9.7209 0.8620 5.1786 17 6 9.8852 -0.5854 5.3334 18 6 10.4993 1.7213 5.9072 19 1 10.1606 2.7295 6.0951 20 6 11.7239 1.2966 6.4041 21 7 12.2629 0.1807 5.9607 22 14 12.6068 2.3089 7.7023 23 1 12.1834 1.8596 9.0529 24 1 14.0737 2.1281 7.5578 25 1 12.2653 3.7435 7.5282 26 6 8.8928 0.7576 2.8381 27 16 4.4863 1.1157 1.4027 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 1.6887 1.8463 0.8901 33 1 6.8307 1.9569 -2.3196 34 1 7.3855 0.3661 -1.7453 35 1 6.0327 0.4744 -2.8971 36 1 5.9878 1.8780 3.1866 37 1 5.8698 0.0976 3.2074 38 1 6.8394 1.6038 5.3380 39 1 7.3196 -0.0960 5.0317 40 1 10.6922 -0.9306 4.6871 41 1 10.1274 -0.8147 6.3711 42 1 8.9583 -1.0880 5.0570 43 1 13.1184 -0.1162 6.3082 44 1 9.1862 -0.2887 2.9230 45 1 9.6301 1.3134 2.2587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980281562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:34 Heat of formation + Delta-G solvation = -18.959110 kcal Electronic energy + Delta-G solvation = -27125.761753 eV Core-core repulsion = 23270.782710 eV Total energy + Delta-G solvation = -3854.979043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60783 -40.75049 -39.00885 -38.65262 -36.62876 -33.71946 -33.38963 -31.52716 -30.18593 -29.80953 -28.75352 -28.05519 -26.96357 -25.42560 -24.07542 -23.75428 -22.35026 -21.00735 -19.73760 -19.30037 -18.94633 -17.89672 -17.67826 -17.55567 -17.06194 -16.62617 -16.56593 -16.10150 -15.88697 -15.37857 -15.10683 -14.95290 -14.86395 -14.42117 -14.26044 -14.00357 -13.87696 -13.61965 -13.46355 -13.43897 -13.25616 -13.06527 -12.78404 -12.62005 -12.41577 -12.39225 -12.34459 -12.21389 -12.06872 -11.85441 -11.50306 -11.24663 -10.82165 -10.70633 -10.63808 -10.59671 -10.11201 -9.64228 -8.80653 -7.83552 -5.34207 -0.96940 0.04816 0.44887 1.19344 1.49271 1.49431 1.58565 1.72848 1.94574 2.51410 2.59719 3.19920 3.26207 3.39470 3.47364 3.75037 3.83962 3.88294 4.05808 4.09183 4.17886 4.23043 4.33556 4.37391 4.52424 4.54598 4.60796 4.62563 4.67160 4.76388 4.79286 4.82084 4.91480 4.93613 5.07699 5.17712 5.25335 5.26109 5.40316 5.65562 5.71504 6.05765 6.28716 6.31529 6.50561 6.86777 7.12963 7.82931 8.27196 9.18971 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.002499 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.163970 B =11202.478901 C =12001.084465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.135 3.865 4 C 0.030 3.970 5 N -0.484 5.484 6 C 0.138 3.862 7 C -0.086 4.086 8 C -0.320 4.320 9 C 0.602 3.398 10 O -0.563 6.563 11 N -0.608 5.608 12 C 0.091 3.909 13 C -0.132 4.132 14 C 0.167 3.833 15 H 0.079 0.921 16 N -0.598 5.598 17 C 0.175 3.825 18 C -0.265 4.265 19 H 0.078 0.922 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.267 1.267 26 C 0.101 3.899 27 S 0.271 5.729 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.001 0.999 41 H 0.019 0.981 42 H 0.036 0.964 43 H 0.248 0.752 44 H 0.056 0.944 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.564 2.686 -9.068 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.056 3.944 4 C -0.244 4.244 5 N -0.201 5.201 6 C -0.001 4.001 7 C -0.145 4.145 8 C -0.444 4.444 9 C 0.391 3.609 10 O -0.444 6.444 11 N -0.341 5.341 12 C -0.032 4.032 13 C -0.172 4.172 14 C 0.058 3.942 15 H 0.097 0.903 16 N -0.319 5.319 17 C 0.030 3.970 18 C -0.395 4.395 19 H 0.095 0.905 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.799 3.201 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.191 1.191 26 C -0.024 4.024 27 S 0.530 5.470 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.019 0.981 41 H 0.038 0.962 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.393 2.458 -8.855 27.947 hybrid contribution 1.696 0.222 -0.324 1.741 sum -24.697 2.680 -9.179 26.484 Atomic orbital electron populations 1.23022 0.77923 1.04293 1.01769 1.87918 1.22548 1.26796 1.95830 1.21066 0.82314 0.86290 1.04716 1.27761 1.02272 1.01075 0.93268 1.66126 1.04144 1.16967 1.32824 1.20807 0.90442 0.94896 0.93984 1.20610 0.96152 1.03983 0.93736 1.25415 0.98330 1.22200 0.98489 1.16615 0.86697 0.76646 0.80970 1.90765 1.45916 1.52911 1.54835 1.48346 1.09909 1.71257 1.04551 1.22372 0.90858 1.03232 0.86722 1.23059 0.95375 1.03673 0.95096 1.21662 0.89408 0.97062 0.86066 0.90327 1.44033 1.40869 1.02449 1.44590 1.20526 0.95380 0.82784 0.98302 1.19578 0.97776 0.96311 1.25843 0.90474 1.25849 0.97189 0.99075 1.02635 1.70240 1.18083 1.25291 1.44674 0.85217 0.76891 0.78842 0.79167 1.21066 1.22687 1.19126 1.22820 0.83310 1.00685 0.95622 1.83743 0.92858 1.62809 1.07547 0.92594 0.88544 0.91755 0.88956 0.87412 0.89555 0.89984 0.89467 0.88842 0.89323 0.87795 0.90371 0.98060 0.96242 0.94575 0.94262 0.92547 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.63 10.69 -148.98 -1.59 -8.22 16 3 C 0.14 1.78 6.51 71.24 0.46 2.24 16 4 C 0.03 0.61 7.02 88.46 0.62 1.23 16 5 N -0.48 -12.33 10.50 -178.29 -1.87 -14.21 16 6 C 0.14 3.84 6.79 42.10 0.29 4.12 16 7 C -0.09 -2.23 9.69 71.24 0.69 -1.53 16 8 C -0.32 -8.94 6.40 23.88 0.15 -8.79 16 9 C 0.60 20.48 7.81 86.45 0.68 21.16 16 10 O -0.56 -22.83 14.52 -4.31 -0.06 -22.89 16 11 N -0.61 -19.49 3.32 -816.01 -2.71 -22.20 16 12 C 0.09 2.16 5.19 86.73 0.45 2.61 16 13 C -0.13 -3.62 6.49 31.79 0.21 -3.41 16 14 C 0.17 6.28 3.55 46.46 0.16 6.44 16 15 H 0.08 2.97 7.96 -2.39 -0.02 2.95 16 16 N -0.60 -28.35 2.96 -694.60 -2.05 -30.40 16 17 C 0.17 8.30 7.56 127.77 0.97 9.27 16 18 C -0.27 -13.91 9.60 84.03 0.81 -13.10 16 19 H 0.08 3.87 7.87 -2.91 -0.02 3.84 16 20 C -0.05 -2.84 5.08 84.86 0.43 -2.41 16 21 N -0.94 -54.86 10.77 21.65 0.23 -54.63 16 22 Si 0.97 44.08 29.58 68.60 2.03 46.11 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 C 0.10 3.86 6.46 86.93 0.56 4.42 16 27 S 0.27 5.13 18.64 -56.49 -1.05 4.07 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.31 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 2.46 6.01 -2.38 -0.01 2.45 16 35 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.09 1.78 6.86 -2.39 -0.02 1.76 16 37 H 0.09 1.78 7.02 -2.39 -0.02 1.76 16 38 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.08 2.21 6.47 -2.39 -0.02 2.20 16 40 H 0.00 0.06 7.33 -2.39 -0.02 0.04 16 41 H 0.02 0.98 7.38 -2.39 -0.02 0.96 16 42 H 0.04 1.43 6.37 -2.39 -0.02 1.42 16 43 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.06 2.34 6.96 -2.39 -0.02 2.32 16 45 H 0.05 2.20 8.03 -2.38 -0.02 2.18 16 Total: -1.00 -71.68 373.18 1.64 -70.04 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.00 Total: 8.61 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 7.72 Total: 23.71 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -6.40 Total: -121.43 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -1.65 Total: -31.11 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -1.05 Total: 4.07 kcal Total: -71.68 1.64 -70.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980281562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.079 kcal (2) G-P(sol) polarization free energy of solvation -71.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds