Wall clock time and date at job start Tue Mar 31 2020 22:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99693 * 2 1 4 4 C 1.50705 * 109.46824 * 180.02562 * 3 2 1 5 5 N 1.29428 * 124.80764 * 90.02922 * 4 3 2 6 6 C 1.30940 * 117.36706 * 180.02562 * 5 4 3 7 7 C 1.50709 * 122.90325 * 179.97438 * 6 5 4 8 8 C 1.35654 * 114.19324 * 359.97438 * 6 5 4 9 9 C 1.46679 * 126.13249 * 180.02562 * 8 6 5 10 10 O 1.21681 * 120.00012 * 5.62915 * 9 8 6 11 11 N 1.34776 * 119.99935 * 185.63646 * 9 8 6 12 12 C 1.47431 * 125.64855 * 174.96193 * 11 9 8 13 13 C 1.54913 * 104.83034 * 204.09003 * 12 11 9 14 14 C 1.55153 * 101.58032 * 322.98590 * 13 12 11 15 15 H 1.08992 * 110.87538 * 277.06812 * 14 13 12 16 16 N 1.46501 * 110.71777 * 153.86608 * 14 13 12 17 17 C 1.46501 * 120.00160 * 305.02594 * 16 14 13 18 18 C 1.36941 * 120.00209 * 125.02347 * 16 14 13 19 19 H 1.07998 * 119.99477 * 333.17125 * 18 16 14 20 20 C 1.38811 * 120.00213 * 152.89366 * 18 16 14 21 21 N 1.31617 * 119.99948 * 350.49259 * 20 18 16 22 22 Si 1.86794 * 120.00021 * 170.49498 * 20 18 16 23 23 H 1.48496 * 109.47331 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47471 * 120.00085 * 22 20 18 25 25 H 1.48500 * 109.46998 * 240.00087 * 22 20 18 26 26 C 1.47022 * 125.64854 * 354.91071 * 11 9 8 27 27 S 1.70956 * 124.80625 * 270.33711 * 4 3 2 28 28 H 1.09005 * 109.47230 * 300.00027 * 1 2 3 29 29 H 1.08996 * 109.47377 * 59.99955 * 1 2 3 30 30 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47341 * 60.00056 * 3 2 1 32 32 H 1.08997 * 109.47179 * 299.99862 * 3 2 1 33 33 H 1.09000 * 109.46861 * 270.04146 * 7 6 5 34 34 H 1.09001 * 109.47155 * 30.03640 * 7 6 5 35 35 H 1.08992 * 109.46921 * 150.04186 * 7 6 5 36 36 H 1.08999 * 110.36368 * 322.92648 * 12 11 9 37 37 H 1.08995 * 110.36836 * 85.14182 * 12 11 9 38 38 H 1.09002 * 111.00235 * 204.91219 * 13 12 11 39 39 H 1.08997 * 111.00232 * 81.06018 * 13 12 11 40 40 H 1.09001 * 109.47122 * 272.46143 * 17 16 14 41 41 H 1.08999 * 109.47425 * 32.45562 * 17 16 14 42 42 H 1.08994 * 109.47200 * 152.46097 * 17 16 14 43 43 H 0.97003 * 120.00339 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.88171 * 59.57088 * 26 11 9 45 45 H 1.08994 * 109.88936 * 298.39578 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2486 1.1289 -1.0636 6 6 5.5429 1.0257 -0.8946 7 6 6.5151 0.9488 -2.0437 8 6 5.9332 0.9940 0.4042 9 6 7.3127 0.8845 0.8903 10 8 8.2397 0.9152 0.1026 11 7 7.5536 0.7496 2.2095 12 6 8.8753 0.5250 2.8230 13 6 8.5716 -0.1585 4.1797 14 6 7.2746 0.5739 4.6140 15 1 7.5075 1.5245 5.0938 16 7 6.4752 -0.2717 5.5040 17 6 6.0780 -1.6154 5.0764 18 6 6.0993 0.1939 6.7358 19 1 6.6984 0.9396 7.2371 20 6 4.9451 -0.2884 7.3375 21 7 4.1146 -1.0472 6.6543 22 14 4.5705 0.1395 9.1168 23 1 5.6537 0.9992 9.6577 24 1 3.2778 0.8666 9.1895 25 1 4.4827 -1.1078 9.9179 26 6 6.5421 0.8031 3.2751 27 16 4.4852 1.1009 1.4026 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8463 -0.8900 33 1 6.6672 -0.0941 -2.3217 34 1 6.1141 1.4972 -2.8961 35 1 7.4668 1.3877 -1.7444 36 1 9.4787 -0.1302 2.1948 37 1 9.3866 1.4745 2.9808 38 1 9.3766 0.0158 4.8937 39 1 8.3924 -1.2255 4.0481 40 1 5.1400 -1.5584 4.5241 41 1 6.8522 -2.0363 4.4349 42 1 5.9461 -2.2511 5.9518 43 1 3.3082 -1.3846 7.0748 44 1 5.7991 0.0207 3.1205 45 1 6.0593 1.7803 3.2793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980281563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:38 Heat of formation + Delta-G solvation = 2.047128 kcal Electronic energy + Delta-G solvation = -27777.209555 eV Core-core repulsion = 23923.141411 eV Total energy + Delta-G solvation = -3854.068144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.33083 -39.45949 -37.98418 -37.36104 -34.82235 -32.46538 -31.77100 -30.32901 -28.87329 -28.03480 -27.86140 -26.21062 -26.12556 -23.81536 -22.82146 -22.61275 -20.77403 -19.58568 -18.46460 -18.06789 -17.16553 -16.78354 -16.58754 -16.06288 -15.84949 -15.71042 -15.08547 -14.95794 -14.50554 -13.92809 -13.82028 -13.47568 -13.36586 -12.93618 -12.90570 -12.80908 -12.53948 -12.47518 -12.32705 -12.13992 -11.85582 -11.60566 -11.51302 -11.23048 -11.03347 -10.93314 -10.68985 -10.54615 -10.41221 -10.11324 -10.00018 -9.93419 -9.75704 -9.50097 -9.38002 -8.86223 -8.65382 -8.32746 -6.87525 -5.88036 -3.38358 0.23173 1.26611 1.69110 2.39565 3.08250 3.24408 3.29571 3.37820 3.39011 3.55500 4.14995 4.36155 4.63984 4.71852 5.01385 5.06022 5.07790 5.09135 5.16242 5.19792 5.24184 5.27717 5.42051 5.49058 5.54622 5.68100 5.72050 5.80870 5.82566 5.89627 5.96099 6.09430 6.24410 6.35533 6.42503 6.46149 6.70496 6.78770 6.81663 7.24058 7.57740 7.58475 7.69447 7.70257 8.20199 8.27949 9.08725 9.69194 10.20203 11.17486 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009567 B = 0.004282 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.054923 B = 6537.002015 C = 9031.268491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.139 3.861 4 C 0.019 3.981 5 N -0.466 5.466 6 C 0.139 3.861 7 C -0.087 4.087 8 C -0.298 4.298 9 C 0.609 3.391 10 O -0.537 6.537 11 N -0.607 5.607 12 C 0.113 3.887 13 C -0.154 4.154 14 C 0.179 3.821 15 H 0.083 0.917 16 N -0.583 5.583 17 C 0.157 3.843 18 C -0.265 4.265 19 H 0.070 0.930 20 C 0.010 3.990 21 N -0.901 5.901 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.062 3.938 27 S 0.248 5.752 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.000 1.000 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.082 0.918 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 4.572 -11.841 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C 0.060 3.940 4 C -0.254 4.254 5 N -0.183 5.183 6 C -0.001 4.001 7 C -0.146 4.146 8 C -0.422 4.422 9 C 0.397 3.603 10 O -0.417 6.417 11 N -0.340 5.340 12 C -0.009 4.009 13 C -0.194 4.194 14 C 0.068 3.932 15 H 0.101 0.899 16 N -0.303 5.303 17 C 0.013 3.987 18 C -0.394 4.394 19 H 0.088 0.912 20 C -0.189 4.189 21 N -0.545 5.545 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.215 1.215 26 C -0.065 4.065 27 S 0.508 5.492 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.018 0.982 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.667 4.356 -11.599 12.502 hybrid contribution -0.321 0.297 0.240 0.499 sum -1.988 4.653 -11.359 12.435 Atomic orbital electron populations 1.22808 0.80005 1.03376 1.00261 1.87983 1.20315 1.26125 1.95498 1.20794 0.84606 0.86203 1.02417 1.27159 1.00842 1.03392 0.94033 1.66047 1.04384 1.15886 1.31959 1.20558 0.89891 0.96065 0.93541 1.20641 0.97262 1.03273 0.93453 1.25600 0.98541 1.20497 0.97584 1.16282 0.86032 0.76920 0.81054 1.90732 1.44139 1.52462 1.54376 1.48389 1.10693 1.70138 1.04809 1.22228 0.84171 1.00210 0.94307 1.23372 1.00128 1.01274 0.94636 1.21341 0.89615 0.94701 0.87563 0.89912 1.43902 1.60741 1.11303 1.14354 1.20816 0.94694 0.85232 0.97983 1.19254 1.04286 1.23120 0.92765 0.91209 1.25142 0.95291 0.99732 0.98768 1.70048 1.11984 1.37270 1.35195 0.86176 0.77953 0.77819 0.84519 1.20170 1.21580 1.21517 1.23252 0.92192 1.01677 0.89368 1.84921 0.94796 1.62120 1.07346 0.93499 0.93774 0.89092 0.90625 0.90215 0.90434 0.90996 0.88067 0.90787 0.91425 0.90033 0.90285 0.95868 0.98157 0.92615 0.93528 0.90043 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.03 10.69 -35.23 -0.38 -5.41 16 3 C 0.14 1.65 6.51 36.01 0.23 1.88 16 4 C 0.02 0.29 7.02 -13.29 -0.09 0.19 16 5 N -0.47 -7.40 10.50 -7.70 -0.08 -7.48 16 6 C 0.14 2.22 6.79 -83.89 -0.57 1.65 16 7 C -0.09 -1.19 9.77 36.01 0.35 -0.83 16 8 C -0.30 -4.94 6.39 -37.10 -0.24 -5.18 16 9 C 0.61 10.65 7.80 -12.85 -0.10 10.55 16 10 O -0.54 -10.00 14.55 5.21 0.08 -9.93 16 11 N -0.61 -10.14 3.33 -172.05 -0.57 -10.71 16 12 C 0.11 1.67 6.89 -2.52 -0.02 1.65 16 13 C -0.15 -2.41 6.62 -24.58 -0.16 -2.57 16 14 C 0.18 3.31 3.45 -66.09 -0.23 3.08 16 15 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 16 N -0.58 -13.29 2.92 -171.39 -0.50 -13.79 16 17 C 0.16 3.60 7.94 59.85 0.47 4.07 16 18 C -0.26 -6.68 9.56 -15.06 -0.14 -6.82 16 19 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 20 C 0.01 0.26 5.11 -17.43 -0.09 0.18 16 21 N -0.90 -24.54 10.82 55.49 0.60 -23.94 16 22 Si 0.91 20.51 29.56 -169.99 -5.03 15.48 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.06 1.08 4.84 -3.06 -0.01 1.07 16 27 S 0.25 3.83 18.69 -107.50 -2.01 1.82 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.10 1.46 5.89 -51.93 -0.31 1.15 16 36 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.32 6.08 -51.93 -0.32 1.00 16 40 H 0.02 0.57 7.35 -51.93 -0.38 0.19 16 41 H 0.00 0.00 6.07 -51.93 -0.32 -0.31 16 42 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 43 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.08 1.58 5.43 -51.93 -0.28 1.30 16 45 H 0.07 1.13 7.22 -51.93 -0.37 0.75 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -30.31 372.58 -8.28 -38.59 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.52 Total: -0.55 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 0.52 Total: 10.31 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.55 Total: -55.93 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.30 Total: -15.34 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -2.01 Total: 1.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.31 -8.28 -38.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980281563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.635 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds