Wall clock time and date at job start Tue Mar 31 2020 22:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99693 * 2 1 4 4 C 1.50705 * 109.46824 * 180.02562 * 3 2 1 5 5 N 1.29428 * 124.80764 * 90.02922 * 4 3 2 6 6 C 1.30940 * 117.36706 * 180.02562 * 5 4 3 7 7 C 1.50709 * 122.90325 * 179.97438 * 6 5 4 8 8 C 1.35654 * 114.19324 * 359.97438 * 6 5 4 9 9 C 1.46679 * 126.13249 * 180.02562 * 8 6 5 10 10 O 1.21681 * 120.00012 * 5.62915 * 9 8 6 11 11 N 1.34776 * 119.99935 * 185.63646 * 9 8 6 12 12 C 1.47431 * 125.64855 * 174.96193 * 11 9 8 13 13 C 1.54913 * 104.83034 * 204.09003 * 12 11 9 14 14 C 1.55153 * 101.58032 * 322.98590 * 13 12 11 15 15 H 1.08992 * 110.87538 * 277.06812 * 14 13 12 16 16 N 1.46501 * 110.71777 * 153.86608 * 14 13 12 17 17 C 1.46501 * 120.00160 * 305.02594 * 16 14 13 18 18 C 1.36941 * 120.00209 * 125.02347 * 16 14 13 19 19 H 1.07998 * 119.99477 * 333.17125 * 18 16 14 20 20 C 1.38811 * 120.00213 * 152.89366 * 18 16 14 21 21 N 1.31617 * 119.99948 * 350.49259 * 20 18 16 22 22 Si 1.86794 * 120.00021 * 170.49498 * 20 18 16 23 23 H 1.48496 * 109.47331 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47471 * 120.00085 * 22 20 18 25 25 H 1.48500 * 109.46998 * 240.00087 * 22 20 18 26 26 C 1.47022 * 125.64854 * 354.91071 * 11 9 8 27 27 S 1.70956 * 124.80625 * 270.33711 * 4 3 2 28 28 H 1.09005 * 109.47230 * 300.00027 * 1 2 3 29 29 H 1.08996 * 109.47377 * 59.99955 * 1 2 3 30 30 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47341 * 60.00056 * 3 2 1 32 32 H 1.08997 * 109.47179 * 299.99862 * 3 2 1 33 33 H 1.09000 * 109.46861 * 270.04146 * 7 6 5 34 34 H 1.09001 * 109.47155 * 30.03640 * 7 6 5 35 35 H 1.08992 * 109.46921 * 150.04186 * 7 6 5 36 36 H 1.08999 * 110.36368 * 322.92648 * 12 11 9 37 37 H 1.08995 * 110.36836 * 85.14182 * 12 11 9 38 38 H 1.09002 * 111.00235 * 204.91219 * 13 12 11 39 39 H 1.08997 * 111.00232 * 81.06018 * 13 12 11 40 40 H 1.09001 * 109.47122 * 272.46143 * 17 16 14 41 41 H 1.08999 * 109.47425 * 32.45562 * 17 16 14 42 42 H 1.08994 * 109.47200 * 152.46097 * 17 16 14 43 43 H 0.97003 * 120.00339 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.88171 * 59.57088 * 26 11 9 45 45 H 1.08994 * 109.88936 * 298.39578 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2486 1.1289 -1.0636 6 6 5.5429 1.0257 -0.8946 7 6 6.5151 0.9488 -2.0437 8 6 5.9332 0.9940 0.4042 9 6 7.3127 0.8845 0.8903 10 8 8.2397 0.9152 0.1026 11 7 7.5536 0.7496 2.2095 12 6 8.8753 0.5250 2.8230 13 6 8.5716 -0.1585 4.1797 14 6 7.2746 0.5739 4.6140 15 1 7.5075 1.5245 5.0938 16 7 6.4752 -0.2717 5.5040 17 6 6.0780 -1.6154 5.0764 18 6 6.0993 0.1939 6.7358 19 1 6.6984 0.9396 7.2371 20 6 4.9451 -0.2884 7.3375 21 7 4.1146 -1.0472 6.6543 22 14 4.5705 0.1395 9.1168 23 1 5.6537 0.9992 9.6577 24 1 3.2778 0.8666 9.1895 25 1 4.4827 -1.1078 9.9179 26 6 6.5421 0.8031 3.2751 27 16 4.4852 1.1009 1.4026 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8463 -0.8900 33 1 6.6672 -0.0941 -2.3217 34 1 6.1141 1.4972 -2.8961 35 1 7.4668 1.3877 -1.7444 36 1 9.4787 -0.1302 2.1948 37 1 9.3866 1.4745 2.9808 38 1 9.3766 0.0158 4.8937 39 1 8.3924 -1.2255 4.0481 40 1 5.1400 -1.5584 4.5241 41 1 6.8522 -2.0363 4.4349 42 1 5.9461 -2.2511 5.9518 43 1 3.3082 -1.3846 7.0748 44 1 5.7991 0.0207 3.1205 45 1 6.0593 1.7803 3.2793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980281563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:37 Heat of formation + Delta-G solvation = -17.212646 kcal Electronic energy + Delta-G solvation = -27778.044722 eV Core-core repulsion = 23923.141411 eV Total energy + Delta-G solvation = -3854.903311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59222 -40.74456 -39.03152 -38.68336 -36.51211 -33.65805 -33.41655 -31.80309 -29.83029 -29.51786 -29.10461 -28.02549 -27.01127 -25.35533 -24.22129 -23.81360 -22.06053 -21.11595 -19.73897 -19.27442 -18.93070 -17.87784 -17.71173 -17.40668 -17.18160 -16.70116 -16.61389 -16.13674 -15.84035 -15.41403 -15.10609 -14.95253 -14.76767 -14.52762 -14.23268 -13.93576 -13.86406 -13.55495 -13.43383 -13.30160 -13.16141 -13.07266 -12.77202 -12.57686 -12.40172 -12.39399 -12.36494 -12.24844 -12.08794 -11.82852 -11.52296 -11.20324 -10.84444 -10.72951 -10.62310 -10.56997 -10.11131 -9.62403 -8.74638 -7.82901 -5.34849 -0.97621 0.07061 0.48876 1.17689 1.49791 1.53027 1.61635 1.78240 1.94557 2.52390 2.57816 3.16036 3.26831 3.34707 3.67319 3.72571 3.78083 3.87131 3.98672 4.14434 4.24471 4.26064 4.28451 4.41720 4.49017 4.55581 4.61162 4.64911 4.69672 4.79429 4.80525 4.84014 4.85355 4.97940 5.08073 5.18430 5.26505 5.30739 5.41848 5.66976 5.71812 6.01295 6.24751 6.36271 6.46878 6.86739 7.15930 7.83668 8.30937 9.21359 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009567 B = 0.004282 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.054923 B = 6537.002015 C = 9031.268491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.136 3.864 4 C 0.030 3.970 5 N -0.479 5.479 6 C 0.137 3.863 7 C -0.083 4.083 8 C -0.320 4.320 9 C 0.608 3.392 10 O -0.551 6.551 11 N -0.609 5.609 12 C 0.115 3.885 13 C -0.140 4.140 14 C 0.171 3.829 15 H 0.090 0.910 16 N -0.596 5.596 17 C 0.175 3.825 18 C -0.267 4.267 19 H 0.077 0.923 20 C -0.041 4.041 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.295 1.295 26 C 0.075 3.925 27 S 0.234 5.766 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.068 0.932 40 H -0.002 1.002 41 H 0.024 0.976 42 H 0.027 0.973 43 H 0.249 0.751 44 H 0.063 0.937 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 5.619 -12.245 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.056 3.944 4 C -0.244 4.244 5 N -0.196 5.196 6 C -0.003 4.003 7 C -0.142 4.142 8 C -0.444 4.444 9 C 0.397 3.603 10 O -0.433 6.433 11 N -0.341 5.341 12 C -0.006 4.006 13 C -0.179 4.179 14 C 0.062 3.938 15 H 0.108 0.892 16 N -0.317 5.317 17 C 0.031 3.969 18 C -0.397 4.397 19 H 0.094 0.906 20 C -0.237 4.237 21 N -0.578 5.578 22 Si 0.793 3.207 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.222 1.222 26 C -0.052 4.052 27 S 0.494 5.506 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.017 0.983 41 H 0.042 0.958 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.263 5.426 -12.007 13.237 hybrid contribution -0.456 -0.018 0.283 0.537 sum -1.719 5.408 -11.724 13.026 Atomic orbital electron populations 1.23027 0.77915 1.04328 1.01729 1.87926 1.22654 1.26847 1.95807 1.21028 0.82628 0.86283 1.04414 1.27723 1.02196 1.01321 0.93166 1.66135 1.04417 1.16830 1.32242 1.20963 0.90377 0.94966 0.93995 1.20658 0.96386 1.03862 0.93299 1.25584 0.98469 1.22295 0.98068 1.16380 0.86254 0.76631 0.81060 1.90717 1.44668 1.53321 1.54603 1.48404 1.11169 1.70009 1.04512 1.22351 0.83450 1.01308 0.93532 1.23246 0.98980 1.00189 0.95532 1.21521 0.90150 0.94827 0.87301 0.89209 1.44010 1.61171 1.11785 1.14718 1.20497 0.94389 0.85426 0.96632 1.19585 1.03900 1.22358 0.93815 0.90579 1.25810 0.95531 1.00289 1.02069 1.70198 1.12369 1.38832 1.36450 0.85248 0.77661 0.77195 0.80573 1.18860 1.22034 1.22227 1.22932 0.91838 1.01224 0.89179 1.84929 0.95031 1.62606 1.08080 0.92427 0.91866 0.88510 0.88605 0.88160 0.89782 0.89172 0.88887 0.90105 0.89390 0.87935 0.91372 0.98345 0.95784 0.95410 0.94187 0.91922 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.41 -10.45 10.69 -148.98 -1.59 -12.04 16 3 C 0.14 3.00 6.51 71.24 0.46 3.46 16 4 C 0.03 0.86 7.02 88.46 0.62 1.48 16 5 N -0.48 -14.77 10.50 -178.28 -1.87 -16.64 16 6 C 0.14 4.28 6.79 42.10 0.29 4.56 16 7 C -0.08 -2.17 9.77 71.24 0.70 -1.48 16 8 C -0.32 -10.52 6.39 23.88 0.15 -10.37 16 9 C 0.61 20.84 7.80 86.45 0.67 21.52 16 10 O -0.55 -20.07 14.55 -4.29 -0.06 -20.13 16 11 N -0.61 -19.64 3.33 -816.47 -2.72 -22.36 16 12 C 0.12 3.14 6.89 86.86 0.60 3.74 16 13 C -0.14 -4.08 6.62 31.99 0.21 -3.87 16 14 C 0.17 6.13 3.45 46.18 0.16 6.29 16 15 H 0.09 3.09 7.94 -2.39 -0.02 3.07 16 16 N -0.60 -27.00 2.92 -696.16 -2.03 -29.04 16 17 C 0.18 8.16 7.94 127.77 1.01 9.17 16 18 C -0.27 -13.33 9.56 84.03 0.80 -12.53 16 19 H 0.08 3.65 7.85 -2.91 -0.02 3.63 16 20 C -0.04 -2.13 5.11 84.86 0.43 -1.69 16 21 N -0.93 -51.87 10.82 21.65 0.23 -51.63 16 22 Si 0.96 42.21 29.56 68.60 2.03 44.24 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 26 C 0.07 2.59 4.84 86.73 0.42 3.01 16 27 S 0.23 7.20 18.69 -56.49 -1.06 6.14 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 2.61 5.89 -2.39 -0.01 2.59 16 36 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.07 2.16 6.08 -2.39 -0.01 2.14 16 40 H 0.00 -0.09 7.35 -2.39 -0.02 -0.11 16 41 H 0.02 0.98 6.07 -2.39 -0.01 0.96 16 42 H 0.03 1.41 7.02 -2.39 -0.02 1.39 16 43 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 44 H 0.06 2.45 5.43 -2.38 -0.01 2.44 16 45 H 0.07 2.34 7.22 -2.39 -0.02 2.32 16 Total: -1.00 -64.71 372.58 1.72 -62.99 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.01 Total: 13.52 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 7.78 Total: 24.95 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -6.39 Total: -119.67 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.65 Total: -32.17 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 7.20 SS G_CDS: -1.06 Total: 6.14 kcal Total: -64.71 1.72 -62.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980281563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.774 kcal (2) G-P(sol) polarization free energy of solvation -64.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds