Wall clock time and date at job start Tue Mar 31 2020 22:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32558 * 121.64874 * 2 1 4 4 S 1.77223 * 105.32051 * 179.97438 * 3 2 1 5 5 C 1.72208 * 94.84677 * 0.29433 * 4 3 2 6 6 O 1.21834 * 127.05673 * 179.85385 * 5 4 3 7 7 N 1.34241 * 105.88265 * 359.83397 * 5 4 3 8 8 C 1.46500 * 121.37765 * 179.97438 * 7 5 4 9 9 C 1.50692 * 109.47211 * 270.02116 * 8 7 5 10 10 O 1.21286 * 119.99935 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00146 * 179.97438 * 9 8 7 12 12 C 1.46915 * 120.62949 * 359.72263 * 11 9 8 13 13 C 1.53625 * 108.54563 * 126.36682 * 12 11 9 14 14 C 1.53038 * 109.24364 * 54.85694 * 13 12 11 15 15 N 1.46494 * 109.46277 * 178.49485 * 14 13 12 16 16 C 1.46495 * 120.00454 * 60.06262 * 15 14 13 17 17 C 1.36943 * 119.99660 * 240.06349 * 15 14 13 18 18 H 1.08004 * 119.99670 * 22.99062 * 17 15 14 19 19 C 1.38808 * 119.99901 * 202.98535 * 17 15 14 20 20 N 1.31619 * 120.00372 * 11.65437 * 19 17 15 21 21 Si 1.86803 * 119.99818 * 191.64821 * 19 17 15 22 22 H 1.48497 * 109.47247 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47180 * 120.00613 * 21 19 17 24 24 H 1.48497 * 109.46973 * 240.00278 * 21 19 17 25 25 C 1.53047 * 109.53549 * 298.51294 * 14 13 12 26 26 C 1.46926 * 120.62834 * 179.97438 * 11 9 8 27 27 H 1.09002 * 109.47070 * 269.71181 * 1 2 3 28 28 H 1.09000 * 109.47297 * 149.70691 * 1 2 3 29 29 H 1.09006 * 109.47289 * 29.70906 * 1 2 3 30 30 H 1.08013 * 127.33759 * 0.03056 * 3 2 1 31 31 H 1.09006 * 109.47184 * 30.01997 * 8 7 5 32 32 H 1.09000 * 109.47206 * 150.01670 * 8 7 5 33 33 H 1.09008 * 109.58582 * 246.19990 * 12 11 9 34 34 H 1.09000 * 109.59170 * 6.62183 * 12 11 9 35 35 H 1.08997 * 109.63239 * 294.86196 * 13 12 11 36 36 H 1.09007 * 109.45666 * 174.73668 * 13 12 11 37 37 H 1.08994 * 109.46083 * 58.52576 * 14 13 12 38 38 H 1.09000 * 109.47352 * 93.84399 * 16 15 14 39 39 H 1.09000 * 109.47444 * 213.84843 * 16 15 14 40 40 H 1.09000 * 109.47064 * 333.84675 * 16 15 14 41 41 H 0.96993 * 120.00575 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.49441 * 301.41148 * 25 14 13 43 43 H 1.08999 * 109.52546 * 181.33203 * 25 14 13 44 44 H 1.08999 * 109.58681 * 353.37236 * 26 11 9 45 45 H 1.08998 * 109.58315 * 113.65806 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1284 0.0000 4 16 3.9033 0.6302 0.0008 5 6 3.5605 -1.0574 -0.0078 6 8 4.3672 -1.9704 -0.0131 7 7 2.2221 -1.1604 -0.0070 8 6 1.5575 -2.4660 -0.0137 9 6 1.3286 -2.9058 -1.4368 10 8 1.6859 -2.1985 -2.3550 11 7 0.7278 -4.0856 -1.6892 12 6 0.2960 -4.9565 -0.5876 13 6 -1.1906 -5.2909 -0.7831 14 6 -1.3934 -5.8923 -2.1757 15 7 -2.8037 -6.2463 -2.3539 16 6 -3.8360 -5.2109 -2.2630 17 6 -3.1570 -7.5453 -2.6055 18 1 -2.4974 -8.3500 -2.3161 19 6 -4.3630 -7.8275 -3.2322 20 7 -5.0582 -6.8583 -3.7887 21 14 -4.9991 -9.5831 -3.2860 22 1 -4.0388 -10.4790 -2.5930 23 1 -6.3183 -9.6525 -2.6075 24 1 -5.1464 -10.0131 -4.6996 25 6 -0.9861 -4.8697 -3.2391 26 6 0.4973 -4.5276 -3.0713 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3634 -0.8873 -0.5184 29 1 -0.3634 0.8926 -0.5093 30 1 1.8152 2.1367 0.0005 31 1 2.1863 -3.1964 0.4956 32 1 0.6000 -2.3890 0.5013 33 1 0.8840 -5.8743 -0.5954 34 1 0.4338 -4.4399 0.3623 35 1 -1.7858 -4.3827 -0.6889 36 1 -1.5033 -6.0110 -0.0269 37 1 -0.7789 -6.7867 -2.2780 38 1 -4.0566 -4.8292 -3.2599 39 1 -4.7405 -5.6367 -1.8286 40 1 -3.4791 -4.3963 -1.6329 41 1 -5.9006 -7.0556 -4.2270 42 1 -1.5833 -3.9654 -3.1217 43 1 -1.1528 -5.2896 -4.2310 44 1 0.7680 -3.7279 -3.7607 45 1 1.1033 -5.4096 -3.2786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985785803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:57 Heat of formation + Delta-G solvation = -2.912871 kcal Electronic energy + Delta-G solvation = -28002.418631 eV Core-core repulsion = 24148.135404 eV Total energy + Delta-G solvation = -3854.283226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.50301 -39.79672 -37.81888 -37.48185 -35.17632 -32.98380 -32.25908 -31.21150 -30.26865 -29.66728 -27.06585 -26.07033 -24.95139 -23.97122 -22.94215 -22.25134 -21.00153 -19.85569 -18.75358 -18.28159 -17.74378 -17.20958 -16.82551 -16.13772 -15.71527 -15.45189 -15.10504 -15.01697 -14.43692 -14.06356 -13.95637 -13.93816 -13.83147 -13.68725 -13.43452 -13.22322 -12.80314 -12.53529 -12.44572 -12.22837 -11.84778 -11.80290 -11.54874 -11.39266 -11.05435 -10.92898 -10.85274 -10.47736 -10.38153 -10.29098 -10.26354 -10.19685 -9.92150 -9.71231 -9.53566 -8.67511 -8.57502 -8.16560 -6.81633 -5.78026 -3.24774 0.73445 1.17541 1.55115 1.89755 2.40126 2.44142 2.98636 3.33123 3.40723 3.42297 4.17068 4.21752 4.40540 4.43893 4.71987 4.75889 4.87544 5.08264 5.10893 5.11843 5.25607 5.28048 5.31090 5.40798 5.42447 5.49235 5.67513 5.79189 5.81644 5.91719 6.04546 6.14863 6.24932 6.43015 6.44337 6.48221 6.69912 6.88010 6.91475 7.07347 7.31155 7.32852 7.67549 7.75415 7.99670 8.34360 9.18178 9.81253 10.30202 11.26813 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.002442 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.492844 B =11461.858313 C =11814.919597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.113 3.887 3 C -0.240 4.240 4 S 0.003 5.997 5 C 0.487 3.513 6 O -0.473 6.473 7 N -0.516 5.516 8 C 0.081 3.919 9 C 0.499 3.501 10 O -0.533 6.533 11 N -0.600 5.600 12 C 0.106 3.894 13 C -0.147 4.147 14 C 0.179 3.821 15 N -0.596 5.596 16 C 0.165 3.835 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.907 5.907 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.290 1.290 25 C -0.143 4.143 26 C 0.114 3.886 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.192 0.808 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.042 0.958 40 H -0.004 1.004 41 H 0.252 0.748 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.298 14.458 11.092 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.003 3.997 3 C -0.378 4.378 4 S 0.246 5.754 5 C 0.169 3.831 6 O -0.353 6.353 7 N -0.237 5.237 8 C -0.048 4.048 9 C 0.284 3.716 10 O -0.410 6.410 11 N -0.333 5.333 12 C -0.018 4.018 13 C -0.187 4.187 14 C 0.070 3.930 15 N -0.317 5.317 16 C 0.020 3.980 17 C -0.385 4.385 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.552 5.552 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.184 4.184 26 C -0.008 4.008 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.209 0.791 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.014 0.986 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.988 14.874 10.512 22.370 hybrid contribution -1.786 -1.735 -0.206 2.498 sum 11.203 13.139 10.306 20.109 Atomic orbital electron populations 1.20797 0.86523 1.05032 1.03823 1.19403 0.95857 0.84705 0.99746 1.24830 0.93077 1.01229 1.18669 1.85053 1.08618 1.00760 1.80995 1.21556 0.83507 0.95865 0.82174 1.90964 1.48617 1.42502 1.53180 1.45639 1.06315 1.06684 1.65030 1.21783 1.01094 0.85101 0.96812 1.20590 0.78367 0.81632 0.90964 1.90731 1.50769 1.53535 1.45963 1.48151 1.58037 1.18610 1.08545 1.21994 0.97077 0.94354 0.88333 1.22568 0.93038 1.01872 1.01256 1.20275 0.87405 0.94892 0.90399 1.43957 0.99115 1.05756 1.82904 1.20732 0.90934 0.88623 0.97675 1.19258 1.03729 0.83107 1.32407 0.91378 1.25038 0.99280 0.97323 0.97996 1.70068 1.15603 1.30466 1.39057 0.86193 0.78661 0.84407 0.77313 1.20340 1.21657 1.21735 1.22501 0.93053 1.00769 1.02044 1.21739 0.97668 1.00004 0.81416 0.89408 0.90590 0.88838 0.79051 0.85838 0.85865 0.90751 0.90695 0.91845 0.90527 0.91828 0.95491 0.93891 0.98559 0.93789 0.92240 0.90470 0.89638 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 9.31 36.01 0.34 -0.32 16 2 C 0.11 1.04 6.59 -82.51 -0.54 0.50 16 3 C -0.24 -1.98 11.24 28.82 0.32 -1.66 16 4 S 0.00 0.03 22.97 -107.50 -2.47 -2.44 16 5 C 0.49 6.66 8.27 53.82 0.45 7.11 16 6 O -0.47 -7.86 17.55 5.07 0.09 -7.78 16 7 N -0.52 -5.92 2.09 -118.57 -0.25 -6.16 16 8 C 0.08 0.83 3.81 -5.20 -0.02 0.81 16 9 C 0.50 6.86 7.50 -10.99 -0.08 6.77 16 10 O -0.53 -9.36 15.84 5.55 0.09 -9.28 16 11 N -0.60 -7.89 2.97 -172.53 -0.51 -8.41 16 12 C 0.11 1.16 6.37 -3.49 -0.02 1.14 16 13 C -0.15 -2.08 5.34 -26.39 -0.14 -2.22 16 14 C 0.18 3.25 2.55 -67.89 -0.17 3.07 16 15 N -0.60 -13.83 2.81 -173.44 -0.49 -14.32 16 16 C 0.16 3.83 8.03 59.84 0.48 4.31 16 17 C -0.26 -6.66 9.59 -15.06 -0.14 -6.80 16 18 H 0.07 1.74 7.82 -52.48 -0.41 1.33 16 19 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 20 N -0.91 -25.66 10.64 55.49 0.59 -25.07 16 21 Si 0.90 21.20 29.57 -169.99 -5.03 16.17 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C -0.14 -2.44 5.34 -26.63 -0.14 -2.59 16 26 C 0.11 1.67 6.43 -3.73 -0.02 1.65 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.60 6.70 -51.93 -0.35 0.25 16 29 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.19 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.12 1.16 7.59 -51.93 -0.39 0.76 16 32 H 0.12 0.86 6.39 -51.93 -0.33 0.52 16 33 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.07 0.59 5.93 -51.93 -0.31 0.28 16 35 H 0.06 0.92 6.72 -51.93 -0.35 0.57 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.18 7.86 -51.93 -0.41 0.77 16 38 H 0.03 0.69 7.42 -51.93 -0.39 0.30 16 39 H 0.04 1.09 7.22 -51.93 -0.37 0.71 16 40 H 0.00 -0.08 6.46 -51.93 -0.34 -0.42 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -33.74 371.26 -8.68 -42.42 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.50 Total: -2.46 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 0.20 Total: 11.72 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.66 Total: -53.96 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.18 Total: -17.05 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.47 Total: -2.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.74 -8.68 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985785803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.505 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds