Wall clock time and date at job start Tue Mar 31 2020 22:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32558 * 121.64874 * 2 1 4 4 S 1.77223 * 105.32051 * 179.97438 * 3 2 1 5 5 C 1.72208 * 94.84677 * 0.29433 * 4 3 2 6 6 O 1.21834 * 127.05673 * 179.85385 * 5 4 3 7 7 N 1.34241 * 105.88265 * 359.83397 * 5 4 3 8 8 C 1.46500 * 121.37765 * 179.97438 * 7 5 4 9 9 C 1.50692 * 109.47211 * 270.02116 * 8 7 5 10 10 O 1.21286 * 119.99935 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00146 * 179.97438 * 9 8 7 12 12 C 1.46915 * 120.62949 * 359.72263 * 11 9 8 13 13 C 1.53625 * 108.54563 * 126.36682 * 12 11 9 14 14 C 1.53038 * 109.24364 * 54.85694 * 13 12 11 15 15 N 1.46494 * 109.46277 * 178.49485 * 14 13 12 16 16 C 1.46495 * 120.00454 * 60.06262 * 15 14 13 17 17 C 1.36943 * 119.99660 * 240.06349 * 15 14 13 18 18 H 1.08004 * 119.99670 * 22.99062 * 17 15 14 19 19 C 1.38808 * 119.99901 * 202.98535 * 17 15 14 20 20 N 1.31619 * 120.00372 * 11.65437 * 19 17 15 21 21 Si 1.86803 * 119.99818 * 191.64821 * 19 17 15 22 22 H 1.48497 * 109.47247 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47180 * 120.00613 * 21 19 17 24 24 H 1.48497 * 109.46973 * 240.00278 * 21 19 17 25 25 C 1.53047 * 109.53549 * 298.51294 * 14 13 12 26 26 C 1.46926 * 120.62834 * 179.97438 * 11 9 8 27 27 H 1.09002 * 109.47070 * 269.71181 * 1 2 3 28 28 H 1.09000 * 109.47297 * 149.70691 * 1 2 3 29 29 H 1.09006 * 109.47289 * 29.70906 * 1 2 3 30 30 H 1.08013 * 127.33759 * 0.03056 * 3 2 1 31 31 H 1.09006 * 109.47184 * 30.01997 * 8 7 5 32 32 H 1.09000 * 109.47206 * 150.01670 * 8 7 5 33 33 H 1.09008 * 109.58582 * 246.19990 * 12 11 9 34 34 H 1.09000 * 109.59170 * 6.62183 * 12 11 9 35 35 H 1.08997 * 109.63239 * 294.86196 * 13 12 11 36 36 H 1.09007 * 109.45666 * 174.73668 * 13 12 11 37 37 H 1.08994 * 109.46083 * 58.52576 * 14 13 12 38 38 H 1.09000 * 109.47352 * 93.84399 * 16 15 14 39 39 H 1.09000 * 109.47444 * 213.84843 * 16 15 14 40 40 H 1.09000 * 109.47064 * 333.84675 * 16 15 14 41 41 H 0.96993 * 120.00575 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.49441 * 301.41148 * 25 14 13 43 43 H 1.08999 * 109.52546 * 181.33203 * 25 14 13 44 44 H 1.08999 * 109.58681 * 353.37236 * 26 11 9 45 45 H 1.08998 * 109.58315 * 113.65806 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1284 0.0000 4 16 3.9033 0.6302 0.0008 5 6 3.5605 -1.0574 -0.0078 6 8 4.3672 -1.9704 -0.0131 7 7 2.2221 -1.1604 -0.0070 8 6 1.5575 -2.4660 -0.0137 9 6 1.3286 -2.9058 -1.4368 10 8 1.6859 -2.1985 -2.3550 11 7 0.7278 -4.0856 -1.6892 12 6 0.2960 -4.9565 -0.5876 13 6 -1.1906 -5.2909 -0.7831 14 6 -1.3934 -5.8923 -2.1757 15 7 -2.8037 -6.2463 -2.3539 16 6 -3.8360 -5.2109 -2.2630 17 6 -3.1570 -7.5453 -2.6055 18 1 -2.4974 -8.3500 -2.3161 19 6 -4.3630 -7.8275 -3.2322 20 7 -5.0582 -6.8583 -3.7887 21 14 -4.9991 -9.5831 -3.2860 22 1 -4.0388 -10.4790 -2.5930 23 1 -6.3183 -9.6525 -2.6075 24 1 -5.1464 -10.0131 -4.6996 25 6 -0.9861 -4.8697 -3.2391 26 6 0.4973 -4.5276 -3.0713 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3634 -0.8873 -0.5184 29 1 -0.3634 0.8926 -0.5093 30 1 1.8152 2.1367 0.0005 31 1 2.1863 -3.1964 0.4956 32 1 0.6000 -2.3890 0.5013 33 1 0.8840 -5.8743 -0.5954 34 1 0.4338 -4.4399 0.3623 35 1 -1.7858 -4.3827 -0.6889 36 1 -1.5033 -6.0110 -0.0269 37 1 -0.7789 -6.7867 -2.2780 38 1 -4.0566 -4.8292 -3.2599 39 1 -4.7405 -5.6367 -1.8286 40 1 -3.4791 -4.3963 -1.6329 41 1 -5.9006 -7.0556 -4.2270 42 1 -1.5833 -3.9654 -3.1217 43 1 -1.1528 -5.2896 -4.2310 44 1 0.7680 -3.7279 -3.7607 45 1 1.1033 -5.4096 -3.2786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985785803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:57 Heat of formation + Delta-G solvation = -24.300392 kcal Electronic energy + Delta-G solvation = -28003.346063 eV Core-core repulsion = 24148.135404 eV Total energy + Delta-G solvation = -3855.210659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.38330 -40.88924 -38.99150 -38.59651 -36.73725 -34.13954 -33.53925 -32.33117 -31.52989 -30.84899 -28.01987 -27.84711 -26.29403 -24.92747 -24.10896 -23.73096 -22.00435 -21.03376 -19.94416 -19.07039 -18.79274 -18.70488 -18.15283 -17.23106 -16.89242 -16.69221 -16.47507 -15.95057 -15.71335 -15.22932 -15.14752 -15.12348 -14.74495 -14.67646 -14.57120 -14.42694 -14.01744 -13.81882 -13.46508 -13.19565 -13.11604 -13.09332 -12.80452 -12.66663 -12.55366 -12.34801 -12.20282 -12.12981 -12.02951 -11.82158 -11.63633 -11.35623 -11.25648 -11.18483 -10.62875 -10.47999 -9.77363 -8.96756 -8.74479 -7.80509 -5.28363 -0.13685 0.39284 0.82091 1.04703 1.38153 1.46495 1.48649 1.57903 1.61932 1.99519 2.51637 3.27143 3.33292 3.52744 3.61270 3.73114 3.87503 4.00767 4.08976 4.15226 4.19500 4.29116 4.37124 4.54551 4.55743 4.61746 4.68860 4.74076 4.77474 4.81298 4.91482 4.92819 4.98911 5.09933 5.23651 5.27364 5.34200 5.49267 5.59464 5.66737 5.68202 5.76039 6.15891 6.28756 6.36250 6.94439 7.18364 7.91565 8.34685 9.22580 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.002442 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.492844 B =11461.858313 C =11814.919597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.095 3.905 3 C -0.225 4.225 4 S 0.001 5.999 5 C 0.466 3.534 6 O -0.520 6.520 7 N -0.517 5.517 8 C 0.082 3.918 9 C 0.497 3.503 10 O -0.577 6.577 11 N -0.599 5.599 12 C 0.110 3.890 13 C -0.134 4.134 14 C 0.172 3.828 15 N -0.611 5.611 16 C 0.183 3.817 17 C -0.256 4.256 18 H 0.073 0.927 19 C -0.056 4.056 20 N -0.940 5.940 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.293 1.293 24 H -0.297 1.297 25 C -0.129 4.129 26 C 0.124 3.876 27 H 0.115 0.885 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.228 0.772 31 H 0.136 0.864 32 H 0.164 0.836 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.059 0.941 38 H -0.006 1.006 39 H 0.014 0.986 40 H 0.031 0.969 41 H 0.246 0.754 42 H 0.047 0.953 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.638 15.286 13.494 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.014 4.014 3 C -0.362 4.362 4 S 0.244 5.756 5 C 0.149 3.851 6 O -0.404 6.404 7 N -0.237 5.237 8 C -0.046 4.046 9 C 0.285 3.715 10 O -0.457 6.457 11 N -0.332 5.332 12 C -0.012 4.012 13 C -0.174 4.174 14 C 0.065 3.935 15 N -0.333 5.333 16 C 0.038 3.962 17 C -0.386 4.386 18 H 0.091 0.909 19 C -0.250 4.250 20 N -0.588 5.588 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.220 1.220 24 H -0.225 1.225 25 C -0.169 4.169 26 C 0.001 3.999 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.245 0.755 31 H 0.153 0.847 32 H 0.181 0.819 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.012 0.988 39 H 0.033 0.967 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.336 15.719 12.956 24.347 hybrid contribution -1.853 -1.895 -0.972 2.823 sum 11.483 13.824 11.984 21.600 Atomic orbital electron populations 1.20907 0.84216 1.05091 1.05556 1.19953 0.97242 0.84106 1.00077 1.25380 0.90897 1.02662 1.17265 1.85044 1.11111 0.99118 1.80346 1.21960 0.84143 0.96493 0.82458 1.90921 1.49896 1.44102 1.55457 1.45740 1.05840 1.07855 1.64256 1.21975 1.03171 0.85071 0.94422 1.21214 0.77258 0.80933 0.92097 1.90713 1.52545 1.54772 1.47697 1.48203 1.57840 1.18912 1.08244 1.22155 0.94609 0.95230 0.89250 1.22365 0.95520 1.01507 0.98019 1.20539 0.84542 0.95318 0.93121 1.44198 1.01218 1.04965 1.82929 1.20408 0.90301 0.89272 0.96201 1.19613 1.03487 0.84627 1.30912 0.90913 1.25768 1.00008 1.00678 0.98591 1.70237 1.15792 1.32164 1.40578 0.85227 0.77983 0.80674 0.76708 1.18875 1.22004 1.22465 1.22263 0.94716 0.99646 1.00294 1.21475 0.95718 0.99977 0.82738 0.86703 0.91920 0.87391 0.75533 0.84662 0.81891 0.89436 0.86359 0.91831 0.90081 0.92235 0.98786 0.96699 0.95043 0.94512 0.93378 0.93218 0.90892 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 9.31 71.24 0.66 -0.22 16 2 C 0.10 1.46 6.59 40.71 0.27 1.73 16 3 C -0.23 -3.03 11.24 66.67 0.75 -2.28 16 4 S 0.00 0.01 22.97 -56.49 -1.30 -1.28 16 5 C 0.47 12.41 8.27 129.87 1.07 13.49 16 6 O -0.52 -17.44 17.55 -4.78 -0.08 -17.52 16 7 N -0.52 -10.76 2.09 -647.51 -1.35 -12.11 16 8 C 0.08 1.42 3.81 85.63 0.33 1.75 16 9 C 0.50 12.70 7.50 87.65 0.66 13.36 16 10 O -0.58 -19.95 15.84 -3.05 -0.05 -20.00 16 11 N -0.60 -14.42 2.97 -818.15 -2.43 -16.85 16 12 C 0.11 1.98 6.37 86.51 0.55 2.53 16 13 C -0.13 -3.40 5.34 30.82 0.16 -3.24 16 14 C 0.17 6.05 2.55 45.02 0.11 6.16 16 15 N -0.61 -28.31 2.81 -702.65 -1.97 -30.29 16 16 C 0.18 8.58 8.03 127.77 1.03 9.60 16 17 C -0.26 -13.34 9.59 84.03 0.81 -12.54 16 18 H 0.07 3.65 7.82 -2.91 -0.02 3.63 16 19 C -0.06 -3.04 5.12 84.86 0.43 -2.60 16 20 N -0.94 -54.71 10.64 21.65 0.23 -54.48 16 21 Si 0.96 44.00 29.57 68.60 2.03 46.03 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 25 C -0.13 -4.40 5.34 30.66 0.16 -4.23 16 26 C 0.12 3.56 6.43 86.35 0.55 4.11 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.77 6.70 -2.39 -0.02 0.75 16 29 H 0.11 0.68 8.10 -2.38 -0.02 0.66 16 30 H 0.23 1.26 8.06 -2.90 -0.02 1.24 16 31 H 0.14 2.09 7.59 -2.38 -0.02 2.07 16 32 H 0.16 1.47 6.39 -2.39 -0.02 1.46 16 33 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.12 1.20 5.93 -2.39 -0.01 1.19 16 35 H 0.06 1.63 6.72 -2.39 -0.02 1.61 16 36 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.06 2.14 7.86 -2.39 -0.02 2.12 16 38 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 39 H 0.01 0.74 7.22 -2.39 -0.02 0.73 16 40 H 0.03 1.22 6.46 -2.39 -0.02 1.20 16 41 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.05 1.73 7.72 -2.39 -0.02 1.71 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.07 2.31 7.01 -2.39 -0.02 2.29 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -77.52 371.26 3.63 -73.89 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.00 Total: 4.99 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 7.55 Total: 27.62 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -5.53 Total: -113.73 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.13 Total: -37.52 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.30 Total: -1.28 kcal Total: -77.52 3.63 -73.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985785803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.586 kcal (2) G-P(sol) polarization free energy of solvation -77.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds