Wall clock time and date at job start Tue Mar 31 2020 22:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32567 * 121.64562 * 2 1 4 4 S 1.77229 * 105.31983 * 180.20153 * 3 2 1 5 5 C 1.72205 * 94.84614 * 359.76138 * 4 3 2 6 6 O 1.21830 * 127.05720 * 179.97438 * 5 4 3 7 7 N 1.34241 * 105.88572 * 0.02562 * 5 4 3 8 8 C 1.46504 * 121.38138 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47071 * 90.01873 * 8 7 5 10 10 C 1.50698 * 109.46991 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00407 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00124 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.64650 * 359.97306 * 12 10 9 14 14 C 1.54907 * 104.82951 * 155.91652 * 13 12 10 15 15 C 1.55159 * 101.58574 * 37.01073 * 14 13 12 16 16 H 1.08999 * 110.71637 * 205.95748 * 15 14 13 17 17 N 1.46494 * 110.71905 * 82.85688 * 15 14 13 18 18 C 1.36945 * 119.99612 * 88.84902 * 17 15 14 19 19 H 1.07999 * 120.00077 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99637 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99539 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00216 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46712 * 90.00052 * 22 20 18 24 24 H 1.48499 * 109.46916 * 209.99467 * 22 20 18 25 25 H 1.48492 * 109.46909 * 330.00070 * 22 20 18 26 26 C 1.47487 * 125.59103 * 180.02562 * 12 10 9 27 27 H 1.09000 * 109.96296 * 300.32056 * 26 12 10 28 28 C 1.52993 * 110.03575 * 61.64084 * 26 12 10 29 29 H 1.09004 * 109.46537 * 270.23703 * 1 2 3 30 30 H 1.08997 * 109.47586 * 30.23628 * 1 2 3 31 31 H 1.09003 * 109.47037 * 150.23975 * 1 2 3 32 32 H 1.08005 * 127.34239 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.46911 * 330.02348 * 8 7 5 34 34 H 1.08997 * 109.47420 * 210.02238 * 8 7 5 35 35 H 1.09005 * 109.47384 * 60.00513 * 9 8 7 36 36 H 1.09001 * 109.47772 * 300.00293 * 9 8 7 37 37 H 1.09002 * 110.36819 * 37.07445 * 13 12 10 38 38 H 1.09004 * 110.36335 * 274.74987 * 13 12 10 39 39 H 1.08994 * 111.00399 * 278.93148 * 14 13 12 40 40 H 1.09010 * 111.03564 * 155.09966 * 14 13 12 41 41 H 0.96995 * 120.00290 * 269.11793 * 17 15 14 42 42 H 0.97005 * 119.99727 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.47080 * 177.61265 * 28 26 12 44 44 H 1.08997 * 109.47020 * 297.60367 * 28 26 12 45 45 H 1.08997 * 109.47062 * 57.61051 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6304 -0.0060 5 6 3.5606 -1.0572 -0.0010 6 8 4.3673 -1.9702 -0.0028 7 7 2.2222 -1.1604 0.0043 8 6 1.5577 -2.4660 0.0091 9 6 1.3314 -2.9177 1.4532 10 6 0.6484 -4.2610 1.4582 11 8 0.3696 -4.8035 0.4099 12 7 0.3463 -4.8592 2.6276 13 6 0.6263 -4.3146 3.9687 14 6 -0.4062 -4.9998 4.8983 15 6 -0.4758 -6.4253 4.2896 16 1 -1.4386 -6.8893 4.5037 17 7 0.6213 -7.2569 4.7904 18 6 0.4613 -7.9803 5.9421 19 1 -0.4734 -7.9374 6.4814 20 6 1.5007 -8.7687 6.4164 21 7 1.3468 -9.4644 7.5231 22 14 3.1173 -8.8435 5.4833 23 1 4.0264 -7.7806 5.9824 24 1 3.7478 -10.1718 5.6912 25 1 2.8627 -8.6374 4.0350 26 6 -0.3180 -6.1675 2.7761 27 1 -1.2984 -6.1433 2.3003 28 6 0.5416 -7.2662 2.1479 29 1 -0.3632 0.0043 1.0277 30 1 -0.3634 0.8878 -0.5175 31 1 -0.3633 -0.8922 -0.5101 32 1 1.8152 2.1368 -0.0004 33 1 2.1843 -3.1945 -0.5054 34 1 0.5980 -2.3872 -0.5016 35 1 0.7047 -2.1892 1.9679 36 1 2.2910 -2.9966 1.9640 37 1 0.4852 -3.2338 3.9763 38 1 1.6408 -4.5678 4.2767 39 1 -1.3743 -4.5025 4.8406 40 1 -0.0463 -5.0313 5.9268 41 1 1.4623 -7.2921 4.3084 42 1 2.0732 -10.0151 7.8548 43 1 0.0629 -8.2336 2.2999 44 1 0.6484 -7.0777 1.0797 45 1 1.5257 -7.2701 2.6164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986367270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:55 Heat of formation + Delta-G solvation = -12.318724 kcal Electronic energy + Delta-G solvation = -27686.055658 eV Core-core repulsion = 23831.364563 eV Total energy + Delta-G solvation = -3854.691095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41948 -40.11495 -37.94989 -37.73188 -34.20353 -33.73600 -32.00528 -31.43104 -30.97007 -29.61160 -28.30692 -25.53978 -25.35521 -23.67623 -23.19260 -22.31091 -20.66949 -19.77886 -18.79422 -18.42251 -17.99873 -17.59739 -16.68317 -16.54098 -16.24709 -15.52370 -15.28887 -14.80202 -14.59239 -14.27416 -14.10868 -14.04537 -14.00188 -13.50316 -13.38160 -13.21630 -13.00756 -12.67304 -12.58572 -12.46385 -11.96261 -11.79558 -11.64058 -11.56349 -11.46944 -11.22233 -11.16062 -10.87108 -10.77327 -10.37984 -10.36652 -10.17834 -10.02693 -9.70931 -9.60930 -9.03683 -8.55927 -8.30192 -7.39227 -5.86634 -3.23420 0.62917 1.01693 1.44963 1.81317 2.35485 2.58359 3.04702 3.31242 3.34805 3.40842 4.05365 4.36791 4.39814 4.50001 4.50646 4.63515 4.85849 4.88991 4.94379 5.04315 5.07438 5.09688 5.17341 5.21518 5.31571 5.35566 5.50041 5.53007 5.55685 5.61571 5.71044 5.75914 5.88421 6.11763 6.21045 6.28712 6.38100 6.42107 6.54126 6.62847 6.72687 6.99889 7.59407 7.88662 8.13103 8.32317 9.09546 9.82030 10.00535 11.31181 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.002723 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.981056 B =10278.547542 C =10881.131099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.104 3.896 3 C -0.241 4.241 4 S -0.003 6.003 5 C 0.479 3.521 6 O -0.467 6.467 7 N -0.533 5.533 8 C 0.117 3.883 9 C -0.153 4.153 10 C 0.533 3.467 11 O -0.546 6.546 12 N -0.608 5.608 13 C 0.101 3.899 14 C -0.158 4.158 15 C 0.177 3.823 16 H 0.078 0.922 17 N -0.739 5.739 18 C -0.249 4.249 19 H 0.093 0.907 20 C 0.010 3.990 21 N -0.930 5.930 22 Si 0.878 3.122 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.276 1.276 26 C 0.125 3.875 27 H 0.077 0.923 28 C -0.153 4.153 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.192 0.808 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.365 0.635 42 H 0.261 0.739 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 23.904 -15.072 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.007 4.007 3 C -0.379 4.379 4 S 0.240 5.760 5 C 0.161 3.839 6 O -0.346 6.346 7 N -0.254 5.254 8 C -0.008 4.008 9 C -0.194 4.194 10 C 0.321 3.679 11 O -0.425 6.425 12 N -0.342 5.342 13 C -0.021 4.021 14 C -0.199 4.199 15 C 0.066 3.934 16 H 0.096 0.904 17 N -0.383 5.383 18 C -0.378 4.378 19 H 0.110 0.890 20 C -0.186 4.186 21 N -0.577 5.577 22 Si 0.708 3.292 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.202 1.202 26 C 0.022 3.978 27 H 0.095 0.905 28 C -0.212 4.212 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.209 0.791 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.200 0.800 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.240 23.559 -15.484 28.281 hybrid contribution 0.196 -0.747 -0.315 0.834 sum -2.044 22.812 -15.799 27.824 Atomic orbital electron populations 1.20839 0.86547 1.04704 1.04217 1.19485 0.95923 0.84889 1.00375 1.24894 0.93162 1.01300 1.18574 1.85211 1.08536 1.01289 1.80963 1.21641 0.83802 0.95732 0.82739 1.91007 1.48558 1.42352 1.52687 1.46164 1.06399 1.07875 1.64944 1.21644 0.99982 0.82260 0.96945 1.21943 1.03067 0.96001 0.98396 1.19796 0.79042 0.86351 0.82755 1.90697 1.54742 1.66281 1.30732 1.48807 1.58833 1.20860 1.05679 1.22365 1.00415 0.97531 0.81817 1.23493 0.97555 0.98600 1.00240 1.21165 0.93560 0.90257 0.88435 0.90369 1.42909 1.12701 1.53690 1.28968 1.19043 1.00779 1.19381 0.98634 0.88972 1.24644 0.97780 0.99047 0.97126 1.69692 1.32707 1.32844 1.22412 0.86686 0.85284 0.77478 0.79784 1.21023 1.21529 1.20215 1.22117 0.95804 0.81951 0.97905 0.90453 1.21984 1.00417 0.98399 1.00369 0.89453 0.89053 0.90175 0.79129 0.87760 0.87776 0.88409 0.88314 0.91473 0.91212 0.91579 0.88923 0.79955 0.92919 0.91012 0.92250 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.39 9.70 36.00 0.35 -0.04 16 2 C 0.10 0.70 6.59 -82.51 -0.54 0.16 16 3 C -0.24 -1.48 11.25 28.83 0.32 -1.16 16 4 S 0.00 -0.03 22.97 -107.50 -2.47 -2.49 16 5 C 0.48 5.81 8.27 53.82 0.45 6.26 16 6 O -0.47 -7.40 17.55 5.07 0.09 -7.31 16 7 N -0.53 -5.09 2.60 -117.28 -0.31 -5.39 16 8 C 0.12 1.16 4.56 -4.04 -0.02 1.14 16 9 C -0.15 -1.58 5.03 -27.89 -0.14 -1.72 16 10 C 0.53 7.34 7.65 -10.98 -0.08 7.26 16 11 O -0.55 -8.99 15.05 5.56 0.08 -8.90 16 12 N -0.61 -8.66 3.08 -162.66 -0.50 -9.16 16 13 C 0.10 1.32 6.67 -2.53 -0.02 1.30 16 14 C -0.16 -2.27 6.77 -24.58 -0.17 -2.44 16 15 C 0.18 3.07 3.46 -66.09 -0.23 2.84 16 16 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 17 N -0.74 -16.14 4.40 -51.65 -0.23 -16.37 16 18 C -0.25 -6.57 10.45 -15.06 -0.16 -6.73 16 19 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 20 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 21 N -0.93 -28.30 13.97 55.49 0.78 -27.53 16 22 Si 0.88 21.72 27.73 -169.99 -4.71 17.01 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.52 6.45 56.52 0.36 -6.15 16 26 C 0.13 1.98 3.45 -66.70 -0.23 1.75 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 C -0.15 -2.67 8.48 37.15 0.32 -2.36 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.17 8.10 -51.93 -0.42 -0.25 16 31 H 0.08 0.32 6.18 -51.93 -0.32 0.00 16 32 H 0.19 0.58 8.06 -52.48 -0.42 0.16 16 33 H 0.10 1.27 7.76 -51.93 -0.40 0.87 16 34 H 0.10 0.87 6.07 -51.93 -0.32 0.55 16 35 H 0.10 0.76 7.85 -51.93 -0.41 0.36 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.50 8.14 -51.92 -0.42 1.07 16 41 H 0.37 8.13 3.45 -40.82 -0.14 7.99 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.03 6.93 -51.93 -0.36 0.67 16 45 H 0.06 1.10 6.14 -51.93 -0.32 0.78 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -33.41 375.34 -8.33 -41.74 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.47 Total: 6.28 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -0.25 Total: 6.48 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.26 Total: -58.45 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.17 Total: -16.22 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.47 Total: -2.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.41 -8.33 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986367270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.423 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds