Wall clock time and date at job start Tue Mar 31 2020 22:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32567 * 121.64562 * 2 1 4 4 S 1.77229 * 105.31983 * 180.20153 * 3 2 1 5 5 C 1.72205 * 94.84614 * 359.76138 * 4 3 2 6 6 O 1.21830 * 127.05720 * 179.97438 * 5 4 3 7 7 N 1.34241 * 105.88572 * 0.02562 * 5 4 3 8 8 C 1.46504 * 121.38138 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47071 * 90.01873 * 8 7 5 10 10 C 1.50698 * 109.46991 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00407 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00124 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.64650 * 359.97306 * 12 10 9 14 14 C 1.54907 * 104.82951 * 155.91652 * 13 12 10 15 15 C 1.55159 * 101.58574 * 37.01073 * 14 13 12 16 16 H 1.08999 * 110.71637 * 205.95748 * 15 14 13 17 17 N 1.46494 * 110.71905 * 82.85688 * 15 14 13 18 18 C 1.36945 * 119.99612 * 88.84902 * 17 15 14 19 19 H 1.07999 * 120.00077 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99637 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99539 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00216 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46712 * 90.00052 * 22 20 18 24 24 H 1.48499 * 109.46916 * 209.99467 * 22 20 18 25 25 H 1.48492 * 109.46909 * 330.00070 * 22 20 18 26 26 C 1.47487 * 125.59103 * 180.02562 * 12 10 9 27 27 H 1.09000 * 109.96296 * 300.32056 * 26 12 10 28 28 C 1.52993 * 110.03575 * 61.64084 * 26 12 10 29 29 H 1.09004 * 109.46537 * 270.23703 * 1 2 3 30 30 H 1.08997 * 109.47586 * 30.23628 * 1 2 3 31 31 H 1.09003 * 109.47037 * 150.23975 * 1 2 3 32 32 H 1.08005 * 127.34239 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.46911 * 330.02348 * 8 7 5 34 34 H 1.08997 * 109.47420 * 210.02238 * 8 7 5 35 35 H 1.09005 * 109.47384 * 60.00513 * 9 8 7 36 36 H 1.09001 * 109.47772 * 300.00293 * 9 8 7 37 37 H 1.09002 * 110.36819 * 37.07445 * 13 12 10 38 38 H 1.09004 * 110.36335 * 274.74987 * 13 12 10 39 39 H 1.08994 * 111.00399 * 278.93148 * 14 13 12 40 40 H 1.09010 * 111.03564 * 155.09966 * 14 13 12 41 41 H 0.96995 * 120.00290 * 269.11793 * 17 15 14 42 42 H 0.97005 * 119.99727 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.47080 * 177.61265 * 28 26 12 44 44 H 1.08997 * 109.47020 * 297.60367 * 28 26 12 45 45 H 1.08997 * 109.47062 * 57.61051 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6304 -0.0060 5 6 3.5606 -1.0572 -0.0010 6 8 4.3673 -1.9702 -0.0028 7 7 2.2222 -1.1604 0.0043 8 6 1.5577 -2.4660 0.0091 9 6 1.3314 -2.9177 1.4532 10 6 0.6484 -4.2610 1.4582 11 8 0.3696 -4.8035 0.4099 12 7 0.3463 -4.8592 2.6276 13 6 0.6263 -4.3146 3.9687 14 6 -0.4062 -4.9998 4.8983 15 6 -0.4758 -6.4253 4.2896 16 1 -1.4386 -6.8893 4.5037 17 7 0.6213 -7.2569 4.7904 18 6 0.4613 -7.9803 5.9421 19 1 -0.4734 -7.9374 6.4814 20 6 1.5007 -8.7687 6.4164 21 7 1.3468 -9.4644 7.5231 22 14 3.1173 -8.8435 5.4833 23 1 4.0264 -7.7806 5.9824 24 1 3.7478 -10.1718 5.6912 25 1 2.8627 -8.6374 4.0350 26 6 -0.3180 -6.1675 2.7761 27 1 -1.2984 -6.1433 2.3003 28 6 0.5416 -7.2662 2.1479 29 1 -0.3632 0.0043 1.0277 30 1 -0.3634 0.8878 -0.5175 31 1 -0.3633 -0.8922 -0.5101 32 1 1.8152 2.1368 -0.0004 33 1 2.1843 -3.1945 -0.5054 34 1 0.5980 -2.3872 -0.5016 35 1 0.7047 -2.1892 1.9679 36 1 2.2910 -2.9966 1.9640 37 1 0.4852 -3.2338 3.9763 38 1 1.6408 -4.5678 4.2767 39 1 -1.3743 -4.5025 4.8406 40 1 -0.0463 -5.0313 5.9268 41 1 1.4623 -7.2921 4.3084 42 1 2.0732 -10.0151 7.8548 43 1 0.0629 -8.2336 2.2999 44 1 0.6484 -7.0777 1.0797 45 1 1.5257 -7.2701 2.6164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986367270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:54 Heat of formation + Delta-G solvation = -34.418275 kcal Electronic energy + Delta-G solvation = -27687.013966 eV Core-core repulsion = 23831.364563 eV Total energy + Delta-G solvation = -3855.649403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17573 -41.26800 -39.10023 -38.69477 -35.87567 -34.55595 -33.57647 -32.46587 -32.08998 -31.05551 -28.97710 -26.92199 -26.16143 -25.13655 -24.40055 -23.36442 -21.47900 -21.05065 -20.06338 -19.78311 -19.06950 -18.58589 -17.75330 -17.51264 -17.22785 -16.68979 -16.36003 -16.15235 -15.71166 -15.53176 -15.21816 -14.99904 -14.65576 -14.59742 -14.48030 -14.23721 -14.21300 -14.03135 -13.64201 -13.34302 -13.24311 -13.13033 -12.99510 -12.59885 -12.44796 -12.42253 -12.39573 -12.27062 -12.06285 -11.98947 -11.74497 -11.58696 -11.25109 -11.01142 -10.96511 -10.60408 -9.72909 -9.33128 -8.97626 -8.04048 -5.35772 -0.14533 0.36692 0.86475 1.10031 1.32907 1.34151 1.40384 1.50021 1.61508 2.01521 2.43777 3.24897 3.34434 3.52894 3.59170 3.61192 3.66403 3.76442 3.94975 4.12836 4.16169 4.24793 4.27549 4.33520 4.42323 4.49798 4.55980 4.65143 4.67230 4.73248 4.79375 4.80326 4.88582 5.00741 5.02291 5.18458 5.22385 5.31912 5.32473 5.37302 5.72915 5.79016 6.20560 6.21574 6.49052 7.03054 7.06361 7.82383 7.99180 9.17321 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.002723 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.981056 B =10278.547542 C =10881.131099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.092 3.908 3 C -0.221 4.221 4 S -0.005 6.005 5 C 0.458 3.542 6 O -0.525 6.525 7 N -0.529 5.529 8 C 0.121 3.879 9 C -0.140 4.140 10 C 0.532 3.468 11 O -0.575 6.575 12 N -0.609 5.609 13 C 0.104 3.896 14 C -0.146 4.146 15 C 0.165 3.835 16 H 0.077 0.923 17 N -0.743 5.743 18 C -0.218 4.218 19 H 0.069 0.931 20 C -0.055 4.055 21 N -0.980 5.980 22 Si 0.935 3.065 23 H -0.281 1.281 24 H -0.298 1.298 25 H -0.262 1.262 26 C 0.132 3.868 27 H 0.093 0.907 28 C -0.148 4.148 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.230 0.770 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.364 0.636 42 H 0.256 0.744 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 27.715 -16.311 32.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.358 4.358 4 S 0.238 5.762 5 C 0.141 3.859 6 O -0.409 6.409 7 N -0.249 5.249 8 C -0.005 4.005 9 C -0.181 4.181 10 C 0.322 3.678 11 O -0.455 6.455 12 N -0.342 5.342 13 C -0.018 4.018 14 C -0.186 4.186 15 C 0.056 3.944 16 H 0.095 0.905 17 N -0.387 5.387 18 C -0.349 4.349 19 H 0.087 0.913 20 C -0.247 4.247 21 N -0.631 5.631 22 Si 0.764 3.236 23 H -0.207 1.207 24 H -0.225 1.225 25 H -0.187 1.187 26 C 0.028 3.972 27 H 0.111 0.889 28 C -0.206 4.206 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.246 0.754 33 H 0.091 0.909 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.199 0.801 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.943 27.469 -16.764 32.421 hybrid contribution 0.566 -1.798 0.006 1.885 sum -3.376 25.671 -16.759 30.842 Atomic orbital electron populations 1.20986 0.83751 1.05796 1.05478 1.20048 0.97444 0.83773 1.00486 1.25448 0.90439 1.02786 1.17109 1.85235 1.11588 0.99115 1.80270 1.22076 0.84392 0.96391 0.82993 1.90963 1.50159 1.44368 1.55407 1.46185 1.05791 1.08697 1.64236 1.21537 1.00127 0.82062 0.96743 1.21876 1.02695 0.94683 0.98821 1.20336 0.78364 0.87171 0.81956 1.90689 1.55863 1.67244 1.31725 1.48830 1.58815 1.20178 1.06421 1.22422 0.98977 0.99843 0.80562 1.23341 0.99684 0.96407 0.99201 1.21425 0.91869 0.91343 0.89802 0.90507 1.42913 1.13985 1.54148 1.27694 1.19035 0.99196 1.17763 0.98883 0.91272 1.25274 1.01111 1.00006 0.98319 1.69839 1.33648 1.34919 1.24651 0.85730 0.81633 0.76823 0.79370 1.20732 1.22495 1.18709 1.21930 0.96376 0.82476 0.96372 0.88901 1.21902 0.99567 0.98996 1.00143 0.87971 0.86602 0.90456 0.75366 0.90901 0.85752 0.84770 0.89288 0.87187 0.92881 0.88308 0.90721 0.80089 0.93458 0.91599 0.92458 0.94453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.25 9.70 71.24 0.69 0.44 16 2 C 0.09 0.89 6.59 40.71 0.27 1.16 16 3 C -0.22 -1.83 11.25 66.67 0.75 -1.08 16 4 S -0.01 -0.09 22.97 -56.49 -1.30 -1.39 16 5 C 0.46 11.03 8.27 129.87 1.07 12.11 16 6 O -0.53 -17.47 17.55 -4.76 -0.08 -17.56 16 7 N -0.53 -9.17 2.60 -643.43 -1.68 -10.84 16 8 C 0.12 2.22 4.56 86.38 0.39 2.62 16 9 C -0.14 -2.52 5.03 29.85 0.15 -2.37 16 10 C 0.53 13.49 7.65 87.66 0.67 14.16 16 11 O -0.57 -18.13 15.05 -3.04 -0.05 -18.17 16 12 N -0.61 -15.78 3.08 -786.94 -2.42 -18.21 16 13 C 0.10 2.38 6.67 86.85 0.58 2.96 16 14 C -0.15 -3.80 6.77 31.99 0.22 -3.58 16 15 C 0.16 5.46 3.46 46.18 0.16 5.62 16 16 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 17 N -0.74 -32.13 4.40 -317.32 -1.40 -33.53 16 18 C -0.22 -11.62 10.45 84.03 0.88 -10.74 16 19 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 20 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 21 N -0.98 -61.39 13.97 21.65 0.30 -61.09 16 22 Si 0.94 45.71 27.73 68.60 1.90 47.62 16 23 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 25 H -0.26 -11.98 6.45 99.48 0.64 -11.34 16 26 C 0.13 3.94 3.45 45.25 0.16 4.09 16 27 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 28 C -0.15 -5.06 8.48 71.98 0.61 -4.45 16 29 H 0.10 0.02 8.14 -2.38 -0.02 0.00 16 30 H 0.12 -0.23 8.10 -2.39 -0.02 -0.25 16 31 H 0.08 0.29 6.18 -2.39 -0.01 0.27 16 32 H 0.23 0.09 8.06 -2.91 -0.02 0.07 16 33 H 0.07 1.83 7.76 -2.39 -0.02 1.81 16 34 H 0.12 1.76 6.07 -2.39 -0.01 1.75 16 35 H 0.13 1.43 7.85 -2.38 -0.02 1.41 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 1.63 7.48 -2.39 -0.02 1.61 16 38 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.36 16.01 3.45 -92.71 -0.32 15.69 16 42 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 44 H 0.06 1.97 6.93 -2.39 -0.02 1.95 16 45 H 0.04 1.41 6.14 -2.39 -0.01 1.39 16 Total: -1.00 -77.08 375.34 2.97 -74.11 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.63 Total: 20.84 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 7.06 Total: 18.22 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -5.19 Total: -123.67 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.13 Total: -35.73 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.62 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.30 Total: -1.39 kcal Total: -77.08 2.97 -74.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986367270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.688 kcal (2) G-P(sol) polarization free energy of solvation -77.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds