Wall clock time and date at job start Tue Mar 31 2020 22:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42893 * 114.00250 * 2 1 4 4 C 1.50706 * 109.47552 * 179.97438 * 3 2 1 5 5 N 1.29428 * 124.80245 * 90.03787 * 4 3 2 6 6 C 1.30943 * 117.36359 * 179.70416 * 5 4 3 7 7 C 1.50703 * 122.90697 * 180.30894 * 6 5 4 8 8 C 1.35665 * 114.18897 * 0.47743 * 6 5 4 9 9 C 1.46684 * 126.12951 * 179.83069 * 8 6 5 10 10 O 1.21692 * 119.99914 * 353.49429 * 9 8 6 11 11 N 1.34773 * 119.99718 * 173.49740 * 9 8 6 12 12 C 1.47422 * 125.65226 * 354.45369 * 11 9 8 13 13 C 1.54909 * 104.83384 * 204.09501 * 12 11 9 14 14 C 1.55157 * 101.58133 * 322.99168 * 13 12 11 15 15 H 1.09002 * 110.87696 * 153.93807 * 14 13 12 16 16 N 1.46505 * 110.71736 * 277.13637 * 14 13 12 17 17 C 1.36932 * 120.00070 * 268.52280 * 16 14 13 18 18 H 1.08003 * 120.00211 * 359.97438 * 17 16 14 19 19 C 1.38816 * 120.00106 * 180.02562 * 17 16 14 20 20 N 1.31617 * 119.99482 * 359.97438 * 19 17 16 21 21 Si 1.86789 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47330 * 269.99609 * 21 19 17 23 23 H 1.48502 * 109.47536 * 149.99882 * 21 19 17 24 24 H 1.48496 * 109.47412 * 29.99737 * 21 19 17 25 25 C 1.47030 * 125.64317 * 174.41594 * 11 9 8 26 26 H 1.08996 * 110.01338 * 59.48199 * 25 11 9 27 27 C 1.53002 * 109.88131 * 298.38710 * 25 11 9 28 28 S 1.70949 * 124.80473 * 270.00295 * 4 3 2 29 29 H 1.09002 * 109.47008 * 60.00053 * 1 2 3 30 30 H 1.09001 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47613 * 300.00491 * 1 2 3 32 32 H 1.09003 * 109.47104 * 59.99455 * 3 2 1 33 33 H 1.08998 * 109.47142 * 299.99397 * 3 2 1 34 34 H 1.09003 * 109.46444 * 270.19038 * 7 6 5 35 35 H 1.08996 * 109.46837 * 30.18300 * 7 6 5 36 36 H 1.08995 * 109.47100 * 150.18887 * 7 6 5 37 37 H 1.08999 * 110.36298 * 322.93271 * 12 11 9 38 38 H 1.08995 * 110.36799 * 85.14472 * 12 11 9 39 39 H 1.08992 * 111.00859 * 204.91403 * 13 12 11 40 40 H 1.09003 * 111.00472 * 81.05809 * 13 12 11 41 41 H 0.96999 * 119.99926 * 88.52619 * 16 14 13 42 42 H 0.97003 * 120.00753 * 359.97438 * 20 19 17 43 43 H 1.09004 * 109.47230 * 302.19663 * 27 25 11 44 44 H 1.08996 * 109.46908 * 62.19518 * 27 25 11 45 45 H 1.09000 * 109.47074 * 182.19580 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2494 1.1286 -1.0618 6 6 5.5442 1.0320 -0.8917 7 6 6.5179 0.9631 -2.0399 8 6 5.9330 0.9957 0.4075 9 6 7.3123 0.8876 0.8948 10 8 8.2225 0.7019 0.1087 11 7 7.5715 0.9937 2.2131 12 6 6.5877 1.3315 3.2577 13 6 7.4275 1.9238 4.4168 14 6 8.7028 1.0419 4.3598 15 1 9.5621 1.5747 4.7669 16 7 8.4924 -0.2203 5.0733 17 6 8.8137 -0.3181 6.4008 18 1 9.2225 0.5351 6.9218 19 6 8.6148 -1.5141 7.0768 20 7 8.1171 -2.5539 6.4418 21 14 9.0524 -1.6473 8.8878 22 1 10.4627 -2.0915 9.0250 23 1 8.1566 -2.6345 9.5423 24 1 8.8857 -0.3217 9.5362 25 6 8.8822 0.7909 2.8477 26 1 9.6075 1.4943 2.4386 27 6 9.3584 -0.6437 2.6112 28 16 4.4847 1.1096 1.4047 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8463 0.8900 33 1 1.6887 1.8462 -0.8900 34 1 6.6739 -0.0782 -2.3218 35 1 6.1160 1.5135 -2.8906 36 1 7.4678 1.4040 -1.7377 37 1 5.8789 2.0715 2.8862 38 1 6.0617 0.4356 3.5875 39 1 6.9139 1.8068 5.3710 40 1 7.6678 2.9705 4.2300 41 1 8.1256 -0.9867 4.6054 42 1 7.8888 -2.4845 5.5015 43 1 8.6201 -1.3415 3.0065 44 1 9.4828 -0.8136 1.5418 45 1 10.3115 -0.7982 3.1169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987430147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:41 Heat of formation + Delta-G solvation = -7.648401 kcal Electronic energy + Delta-G solvation = -27643.049872 eV Core-core repulsion = 23788.561298 eV Total energy + Delta-G solvation = -3854.488574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53933 -39.75298 -38.19705 -37.46380 -34.36991 -32.67805 -31.78482 -30.99558 -29.18770 -29.04643 -27.74559 -26.39723 -25.37503 -23.58362 -23.18302 -22.83235 -21.23323 -19.53126 -18.41687 -18.29042 -17.56314 -16.98789 -16.74543 -16.31650 -16.00098 -15.82760 -15.17446 -14.89297 -14.67468 -14.06200 -13.97823 -13.72598 -13.47482 -13.20598 -13.08821 -12.85145 -12.64036 -12.58499 -12.52027 -12.28397 -11.94347 -11.78867 -11.51712 -11.35793 -11.33099 -11.11496 -10.75539 -10.39858 -10.29010 -10.24180 -10.04388 -9.91301 -9.65274 -9.57965 -9.26736 -9.02905 -8.98457 -8.45019 -7.15780 -6.18283 -3.20332 0.04792 1.02684 1.45679 2.24655 2.99004 3.14114 3.35931 3.47571 3.51587 3.65620 3.96065 4.49861 4.51686 4.59771 4.82759 4.84727 4.89421 4.95361 4.96319 5.02394 5.15176 5.26588 5.30989 5.37119 5.54958 5.57269 5.62464 5.64871 5.66679 5.75651 5.78225 5.92410 6.14323 6.23311 6.24866 6.32264 6.45044 6.54063 6.61631 6.68522 6.80491 7.44543 7.60069 7.72986 8.15072 8.66415 9.10871 9.97489 10.11612 11.28973 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.003214 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.886373 B = 8709.462898 C =10093.463418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.026 3.974 5 N -0.461 5.461 6 C 0.141 3.859 7 C -0.084 4.084 8 C -0.288 4.288 9 C 0.608 3.392 10 O -0.526 6.526 11 N -0.603 5.603 12 C 0.093 3.907 13 C -0.153 4.153 14 C 0.178 3.822 15 H 0.075 0.925 16 N -0.724 5.724 17 C -0.337 4.337 18 H 0.067 0.933 19 C -0.041 4.041 20 N -0.940 5.940 21 Si 1.083 2.917 22 H -0.295 1.295 23 H -0.288 1.288 24 H -0.294 1.294 25 C 0.127 3.873 26 H 0.077 0.923 27 C -0.148 4.148 28 S 0.218 5.782 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.371 0.629 42 H 0.255 0.745 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.010 11.153 -12.514 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.060 3.940 4 C -0.248 4.248 5 N -0.178 5.178 6 C 0.002 3.998 7 C -0.143 4.143 8 C -0.412 4.412 9 C 0.395 3.605 10 O -0.405 6.405 11 N -0.336 5.336 12 C -0.031 4.031 13 C -0.195 4.195 14 C 0.066 3.934 15 H 0.093 0.907 16 N -0.368 5.368 17 C -0.467 4.467 18 H 0.085 0.915 19 C -0.239 4.239 20 N -0.584 5.584 21 Si 0.913 3.087 22 H -0.223 1.223 23 H -0.214 1.214 24 H -0.221 1.221 25 C 0.024 3.976 26 H 0.095 0.905 27 C -0.207 4.207 28 S 0.477 5.523 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.207 0.793 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.865 10.031 -10.923 18.992 hybrid contribution -0.075 0.972 -2.107 2.321 sum -11.939 11.004 -13.029 20.818 Atomic orbital electron populations 1.22817 0.79896 1.03448 1.00317 1.87983 1.20384 1.26111 1.95508 1.20798 0.84513 0.86208 1.02494 1.27091 1.00712 1.03462 0.93583 1.66044 1.04392 1.15535 1.31829 1.20608 0.89859 0.95696 0.93652 1.20596 0.96786 1.03573 0.93322 1.25629 0.98322 1.19895 0.97341 1.16233 0.85723 0.77395 0.81102 1.90772 1.45073 1.50472 1.54211 1.48483 1.11977 1.68139 1.05031 1.22484 0.91790 1.00058 0.88781 1.23499 0.99571 0.98875 0.97534 1.21141 0.95353 0.88761 0.88146 0.90710 1.42565 1.76796 1.08460 1.08952 1.20058 1.40512 0.99620 0.86541 0.91503 1.25776 0.99974 0.91889 1.06253 1.70863 1.45541 1.30840 1.11167 0.83195 0.76132 0.74984 0.74352 1.22286 1.21418 1.22107 1.22081 0.83371 0.98008 0.94126 0.90520 1.21919 1.02150 0.95399 1.01203 1.84347 0.95484 1.63620 1.08869 0.93625 0.89025 0.93580 0.90688 0.90051 0.90051 0.90924 0.88474 0.91368 0.90561 0.89027 0.91596 0.79288 0.93377 0.92154 0.92542 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.15 10.69 -35.23 -0.38 -4.52 16 3 C 0.14 1.31 6.51 36.01 0.23 1.55 16 4 C 0.03 0.32 7.02 -13.29 -0.09 0.23 16 5 N -0.46 -6.59 10.50 -7.70 -0.08 -6.67 16 6 C 0.14 2.06 6.79 -83.89 -0.57 1.49 16 7 C -0.08 -1.08 9.62 36.01 0.35 -0.73 16 8 C -0.29 -4.36 6.35 -37.09 -0.24 -4.60 16 9 C 0.61 10.29 7.53 -12.85 -0.10 10.19 16 10 O -0.53 -9.79 13.63 5.20 0.07 -9.72 16 11 N -0.60 -9.89 3.07 -164.54 -0.50 -10.39 16 12 C 0.09 1.39 5.29 -2.53 -0.01 1.38 16 13 C -0.15 -2.40 6.77 -24.58 -0.17 -2.57 16 14 C 0.18 3.28 3.48 -66.09 -0.23 3.05 16 15 H 0.08 1.38 8.09 -51.93 -0.42 0.95 16 16 N -0.72 -16.65 4.55 -51.65 -0.23 -16.89 16 17 C -0.34 -8.80 9.96 -15.06 -0.15 -8.95 16 18 H 0.07 1.72 7.83 -52.48 -0.41 1.30 16 19 C -0.04 -1.13 5.50 -17.43 -0.10 -1.22 16 20 N -0.94 -28.00 13.70 55.49 0.76 -27.24 16 21 Si 1.08 24.94 29.92 -169.99 -5.09 19.86 16 22 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.13 2.19 3.40 -66.95 -0.23 1.96 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 27 C -0.15 -2.74 8.48 37.16 0.32 -2.43 16 28 S 0.22 2.73 18.89 -107.50 -2.03 0.70 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.33 6.17 -51.93 -0.32 1.01 16 37 H 0.07 0.88 5.80 -40.81 -0.24 0.64 16 38 H 0.08 1.24 7.97 -51.93 -0.41 0.83 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.37 9.02 4.52 -40.82 -0.18 8.83 16 42 H 0.25 7.53 6.77 -40.82 -0.28 7.25 16 43 H 0.06 1.22 6.24 -51.93 -0.32 0.90 16 44 H 0.06 1.03 7.09 -51.93 -0.37 0.66 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -32.29 373.99 -8.12 -40.40 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.40 Total: 8.14 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 0.13 Total: 0.69 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.06 Total: -61.19 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.31 Total: -14.24 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.09 Total: 19.86 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.03 Total: 0.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.29 -8.12 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987430147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.756 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds