Wall clock time and date at job start Tue Mar 31 2020 22:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42893 * 114.00250 * 2 1 4 4 C 1.50706 * 109.47552 * 179.97438 * 3 2 1 5 5 N 1.29428 * 124.80245 * 90.03787 * 4 3 2 6 6 C 1.30943 * 117.36359 * 179.70416 * 5 4 3 7 7 C 1.50703 * 122.90697 * 180.30894 * 6 5 4 8 8 C 1.35665 * 114.18897 * 0.47743 * 6 5 4 9 9 C 1.46684 * 126.12951 * 179.83069 * 8 6 5 10 10 O 1.21692 * 119.99914 * 353.49429 * 9 8 6 11 11 N 1.34773 * 119.99718 * 173.49740 * 9 8 6 12 12 C 1.47422 * 125.65226 * 354.45369 * 11 9 8 13 13 C 1.54909 * 104.83384 * 204.09501 * 12 11 9 14 14 C 1.55157 * 101.58133 * 322.99168 * 13 12 11 15 15 H 1.09002 * 110.87696 * 153.93807 * 14 13 12 16 16 N 1.46505 * 110.71736 * 277.13637 * 14 13 12 17 17 C 1.36932 * 120.00070 * 268.52280 * 16 14 13 18 18 H 1.08003 * 120.00211 * 359.97438 * 17 16 14 19 19 C 1.38816 * 120.00106 * 180.02562 * 17 16 14 20 20 N 1.31617 * 119.99482 * 359.97438 * 19 17 16 21 21 Si 1.86789 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47330 * 269.99609 * 21 19 17 23 23 H 1.48502 * 109.47536 * 149.99882 * 21 19 17 24 24 H 1.48496 * 109.47412 * 29.99737 * 21 19 17 25 25 C 1.47030 * 125.64317 * 174.41594 * 11 9 8 26 26 H 1.08996 * 110.01338 * 59.48199 * 25 11 9 27 27 C 1.53002 * 109.88131 * 298.38710 * 25 11 9 28 28 S 1.70949 * 124.80473 * 270.00295 * 4 3 2 29 29 H 1.09002 * 109.47008 * 60.00053 * 1 2 3 30 30 H 1.09001 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47613 * 300.00491 * 1 2 3 32 32 H 1.09003 * 109.47104 * 59.99455 * 3 2 1 33 33 H 1.08998 * 109.47142 * 299.99397 * 3 2 1 34 34 H 1.09003 * 109.46444 * 270.19038 * 7 6 5 35 35 H 1.08996 * 109.46837 * 30.18300 * 7 6 5 36 36 H 1.08995 * 109.47100 * 150.18887 * 7 6 5 37 37 H 1.08999 * 110.36298 * 322.93271 * 12 11 9 38 38 H 1.08995 * 110.36799 * 85.14472 * 12 11 9 39 39 H 1.08992 * 111.00859 * 204.91403 * 13 12 11 40 40 H 1.09003 * 111.00472 * 81.05809 * 13 12 11 41 41 H 0.96999 * 119.99926 * 88.52619 * 16 14 13 42 42 H 0.97003 * 120.00753 * 359.97438 * 20 19 17 43 43 H 1.09004 * 109.47230 * 302.19663 * 27 25 11 44 44 H 1.08996 * 109.46908 * 62.19518 * 27 25 11 45 45 H 1.09000 * 109.47074 * 182.19580 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2494 1.1286 -1.0618 6 6 5.5442 1.0320 -0.8917 7 6 6.5179 0.9631 -2.0399 8 6 5.9330 0.9957 0.4075 9 6 7.3123 0.8876 0.8948 10 8 8.2225 0.7019 0.1087 11 7 7.5715 0.9937 2.2131 12 6 6.5877 1.3315 3.2577 13 6 7.4275 1.9238 4.4168 14 6 8.7028 1.0419 4.3598 15 1 9.5621 1.5747 4.7669 16 7 8.4924 -0.2203 5.0733 17 6 8.8137 -0.3181 6.4008 18 1 9.2225 0.5351 6.9218 19 6 8.6148 -1.5141 7.0768 20 7 8.1171 -2.5539 6.4418 21 14 9.0524 -1.6473 8.8878 22 1 10.4627 -2.0915 9.0250 23 1 8.1566 -2.6345 9.5423 24 1 8.8857 -0.3217 9.5362 25 6 8.8822 0.7909 2.8477 26 1 9.6075 1.4943 2.4386 27 6 9.3584 -0.6437 2.6112 28 16 4.4847 1.1096 1.4047 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8463 0.8900 33 1 1.6887 1.8462 -0.8900 34 1 6.6739 -0.0782 -2.3218 35 1 6.1160 1.5135 -2.8906 36 1 7.4678 1.4040 -1.7377 37 1 5.8789 2.0715 2.8862 38 1 6.0617 0.4356 3.5875 39 1 6.9139 1.8068 5.3710 40 1 7.6678 2.9705 4.2300 41 1 8.1256 -0.9867 4.6054 42 1 7.8888 -2.4845 5.5015 43 1 8.6201 -1.3415 3.0065 44 1 9.4828 -0.8136 1.5418 45 1 10.3115 -0.7982 3.1169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987430147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:40 Heat of formation + Delta-G solvation = -29.407011 kcal Electronic energy + Delta-G solvation = -27643.993396 eV Core-core repulsion = 23788.561298 eV Total energy + Delta-G solvation = -3855.432098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74515 -40.94658 -39.08797 -38.68766 -36.13482 -33.84794 -33.30107 -32.39021 -30.78221 -29.84870 -29.00806 -27.01709 -26.84732 -25.53994 -24.40920 -23.82213 -22.51901 -20.92381 -19.66880 -19.57054 -19.20366 -17.98013 -17.78495 -17.53641 -16.98936 -16.78563 -16.55835 -16.21305 -15.84847 -15.60871 -15.23353 -15.06353 -14.96768 -14.38289 -14.27248 -14.16258 -13.83501 -13.58117 -13.44506 -13.35804 -13.28733 -13.10996 -12.89036 -12.58747 -12.52930 -12.39030 -12.37979 -11.95685 -11.87648 -11.78866 -11.26451 -11.21442 -10.95232 -10.84465 -10.69332 -10.65646 -10.13290 -9.70350 -9.10687 -8.33137 -5.28662 -1.01287 0.00006 0.41500 1.15653 1.62681 1.70133 1.72289 1.85672 1.91521 2.55674 2.74205 3.15040 3.26529 3.42877 3.57098 3.67959 3.70640 3.80398 3.94011 4.05415 4.10862 4.13520 4.23397 4.28381 4.35551 4.49662 4.50510 4.56477 4.60855 4.64325 4.67085 4.76712 4.80221 4.86885 4.91588 5.05411 5.16715 5.19451 5.23161 5.29993 5.67621 6.01735 6.24976 6.44983 6.52870 6.84205 7.10891 8.01037 8.13478 9.17542 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.003214 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.886373 B = 8709.462898 C =10093.463418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.135 3.865 4 C 0.033 3.967 5 N -0.481 5.481 6 C 0.139 3.861 7 C -0.081 4.081 8 C -0.320 4.320 9 C 0.606 3.394 10 O -0.550 6.550 11 N -0.604 5.604 12 C 0.096 3.904 13 C -0.140 4.140 14 C 0.170 3.830 15 H 0.080 0.920 16 N -0.736 5.736 17 C -0.322 4.322 18 H 0.074 0.926 19 C -0.103 4.103 20 N -0.977 5.977 21 Si 1.128 2.872 22 H -0.290 1.290 23 H -0.299 1.299 24 H -0.269 1.269 25 C 0.133 3.867 26 H 0.091 0.909 27 C -0.137 4.137 28 S 0.246 5.754 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.362 0.638 42 H 0.241 0.759 43 H 0.036 0.964 44 H 0.054 0.946 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.395 13.333 -12.401 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.056 3.944 4 C -0.241 4.241 5 N -0.198 5.198 6 C 0.000 4.000 7 C -0.140 4.140 8 C -0.444 4.444 9 C 0.395 3.605 10 O -0.431 6.431 11 N -0.337 5.337 12 C -0.027 4.027 13 C -0.181 4.181 14 C 0.060 3.940 15 H 0.098 0.902 16 N -0.379 5.379 17 C -0.453 4.453 18 H 0.092 0.908 19 C -0.295 4.295 20 N -0.626 5.626 21 Si 0.954 3.046 22 H -0.218 1.218 23 H -0.226 1.226 24 H -0.194 1.194 25 C 0.030 3.970 26 H 0.109 0.891 27 C -0.195 4.195 28 S 0.505 5.495 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.197 0.803 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.258 12.281 -10.820 21.064 hybrid contribution 0.282 0.351 -2.245 2.290 sum -12.976 12.632 -13.065 22.330 Atomic orbital electron populations 1.23024 0.77860 1.04274 1.01831 1.87926 1.22649 1.26896 1.95834 1.21070 0.82316 0.86271 1.04739 1.27765 1.02257 1.00998 0.93060 1.66136 1.04202 1.16886 1.32545 1.20891 0.90444 0.94739 0.93953 1.20584 0.96128 1.03707 0.93563 1.25506 0.98371 1.22292 0.98280 1.16470 0.86354 0.76764 0.80885 1.90749 1.46084 1.51534 1.54740 1.48471 1.11799 1.68205 1.05223 1.22498 0.91841 1.00092 0.88306 1.23354 0.97498 0.99948 0.97299 1.21359 0.96901 0.87421 0.88321 0.90223 1.42697 1.76924 1.09927 1.08320 1.20389 1.37936 0.99255 0.87744 0.90817 1.27048 1.00707 0.92066 1.09646 1.70976 1.48709 1.32213 1.10662 0.82602 0.75693 0.75808 0.70532 1.21763 1.22591 1.19405 1.21939 0.84317 0.97223 0.93533 0.89109 1.21775 1.01053 0.96044 1.00665 1.84121 0.94011 1.63084 1.08268 0.92240 0.88665 0.91899 0.87707 0.88504 0.90071 0.89091 0.89526 0.88699 0.92100 0.90033 0.88421 0.80343 0.94808 0.94487 0.92721 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.14 10.69 -148.98 -1.59 -9.73 16 3 C 0.14 2.18 6.51 71.24 0.46 2.64 16 4 C 0.03 0.77 7.02 88.46 0.62 1.39 16 5 N -0.48 -13.06 10.50 -178.28 -1.87 -14.93 16 6 C 0.14 3.98 6.79 42.10 0.29 4.27 16 7 C -0.08 -2.05 9.62 71.24 0.69 -1.36 16 8 C -0.32 -9.49 6.35 23.88 0.15 -9.34 16 9 C 0.61 20.35 7.53 86.45 0.65 21.00 16 10 O -0.55 -20.59 13.63 -4.32 -0.06 -20.65 16 11 N -0.60 -19.37 3.07 -792.71 -2.43 -21.80 16 12 C 0.10 2.74 5.29 86.86 0.46 3.20 16 13 C -0.14 -4.10 6.77 31.99 0.22 -3.88 16 14 C 0.17 6.09 3.48 46.18 0.16 6.25 16 15 H 0.08 2.79 8.09 -2.39 -0.02 2.77 16 16 N -0.74 -33.99 4.55 -317.31 -1.44 -35.44 16 17 C -0.32 -16.72 9.96 84.04 0.84 -15.89 16 18 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 19 C -0.10 -5.74 5.50 84.86 0.47 -5.27 16 20 N -0.98 -59.68 13.70 21.65 0.30 -59.38 16 21 Si 1.13 50.17 29.92 68.60 2.05 52.23 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 25 C 0.13 4.51 3.40 45.34 0.15 4.67 16 26 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 27 C -0.14 -5.18 8.48 71.98 0.61 -4.57 16 28 S 0.25 5.76 18.89 -56.49 -1.07 4.69 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 2.38 6.17 -2.39 -0.01 2.37 16 37 H 0.10 2.21 5.80 -9.46 -0.05 2.15 16 38 H 0.06 1.95 7.97 -2.39 -0.02 1.93 16 39 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.36 18.12 4.52 -92.71 -0.42 17.70 16 42 H 0.24 14.83 6.77 -92.71 -0.63 14.20 16 43 H 0.04 1.55 6.24 -2.39 -0.01 1.54 16 44 H 0.05 2.05 7.09 -2.39 -0.02 2.03 16 45 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -70.38 373.99 1.60 -68.79 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.70 Total: 31.58 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 7.01 Total: 4.64 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -5.45 Total: -131.55 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.65 Total: -30.38 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.23 kcal Atomic # 16 Polarization: 5.76 SS G_CDS: -1.07 Total: 4.69 kcal Total: -70.38 1.60 -68.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987430147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.381 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds