Wall clock time and date at job start Tue Mar 31 2020 22:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 S 1.77224 * 127.34006 * 2 1 4 4 C 1.72211 * 94.84819 * 179.81081 * 3 2 1 5 5 O 1.21822 * 127.06394 * 180.20371 * 4 3 2 6 6 N 1.34252 * 105.88069 * 0.31949 * 4 3 2 7 7 C 1.46503 * 121.37600 * 179.88093 * 6 4 3 8 8 C 1.50698 * 109.47151 * 269.71541 * 7 6 4 9 9 O 1.21280 * 119.99745 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99753 * 180.02562 * 8 7 6 11 11 C 1.47425 * 125.65138 * 0.02907 * 10 8 7 12 12 C 1.54908 * 104.92961 * 204.15299 * 11 10 8 13 13 C 1.55154 * 101.58289 * 322.93718 * 12 11 10 14 14 H 1.08997 * 110.72022 * 277.13434 * 13 12 11 15 15 N 1.46503 * 110.72274 * 154.04044 * 13 12 11 16 16 C 1.36939 * 119.99620 * 86.44979 * 15 13 12 17 17 H 1.08002 * 120.00422 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99685 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99685 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00090 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.46907 * 90.00212 * 20 18 16 22 22 H 1.48506 * 109.47039 * 210.00370 * 20 18 16 23 23 H 1.48498 * 109.46962 * 329.99948 * 20 18 16 24 24 C 1.47290 * 125.79121 * 180.02562 * 10 8 7 25 25 H 1.08999 * 109.87327 * 298.36024 * 24 10 8 26 26 C 1.52998 * 109.98499 * 59.43218 * 24 10 8 27 27 C 1.32563 * 127.33948 * 180.02562 * 2 1 3 28 28 C 1.50707 * 121.64660 * 359.97350 * 27 2 1 29 29 H 1.08998 * 109.47051 * 270.00509 * 1 2 3 30 30 H 1.08998 * 109.46567 * 30.00541 * 1 2 3 31 31 H 1.08998 * 109.47195 * 150.00154 * 1 2 3 32 32 H 1.09001 * 109.46828 * 149.71604 * 7 6 4 33 33 H 1.09000 * 109.47155 * 29.72095 * 7 6 4 34 34 H 1.09002 * 110.36696 * 85.25946 * 11 10 8 35 35 H 1.08995 * 110.36608 * 323.04783 * 11 10 8 36 36 H 1.09008 * 111.00494 * 81.01141 * 12 11 10 37 37 H 1.08999 * 111.00647 * 204.85975 * 12 11 10 38 38 H 0.96998 * 120.00254 * 266.45795 * 15 13 12 39 39 H 0.97008 * 119.99561 * 179.97438 * 19 18 16 40 40 H 1.09005 * 109.47358 * 177.91423 * 26 24 10 41 41 H 1.09002 * 109.47151 * 297.90948 * 26 24 10 42 42 H 1.08998 * 109.47688 * 57.91465 * 26 24 10 43 43 H 1.08996 * 109.47279 * 270.02927 * 28 27 2 44 44 H 1.09003 * 109.46668 * 30.02366 * 28 27 2 45 45 H 1.08996 * 109.46921 * 150.02411 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0346 0.4839 0.0057 5 8 5.1760 0.9095 0.0113 6 7 3.6508 -0.8025 0.0000 7 6 4.6313 -1.8910 0.0000 8 6 4.9675 -2.2643 -1.4208 9 8 4.4402 -1.6784 -2.3426 10 7 5.8539 -3.2492 -1.6670 11 6 6.5650 -4.0402 -0.6462 12 6 7.8458 -4.5472 -1.3549 13 6 7.3177 -4.8335 -2.7855 14 1 6.8462 -5.8150 -2.8333 15 7 8.4000 -4.7320 -3.7676 16 6 9.1904 -5.8191 -4.0301 17 1 9.0155 -6.7513 -3.5135 18 6 10.2163 -5.7229 -4.9602 19 7 10.9756 -6.7679 -5.2129 20 14 10.5192 -4.1103 -5.8533 21 1 11.4810 -3.2876 -5.0767 22 1 11.0798 -4.3881 -7.2001 23 1 9.2374 -3.3736 -5.9930 24 6 6.2750 -3.7160 -2.9990 25 1 5.4159 -4.1094 -3.5424 26 6 6.9024 -2.5619 -3.7834 27 6 2.3111 -1.0540 -0.0005 28 6 1.7707 -2.4608 -0.0005 29 1 -0.3633 0.0001 1.0276 30 1 -0.3632 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 4.2133 -2.7566 0.5139 33 1 5.5358 -1.5653 0.5139 34 1 5.9519 -4.8816 -0.3232 35 1 6.8261 -3.4128 0.2059 36 1 8.6156 -3.7756 -1.3697 37 1 8.2171 -5.4584 -0.8860 38 1 8.5569 -3.8949 -4.2318 39 1 11.6923 -6.7007 -5.8632 40 1 7.2443 -2.9248 -4.7527 41 1 6.1607 -1.7768 -3.9304 42 1 7.7494 -2.1618 -3.2260 43 1 1.6403 -2.8000 1.0271 44 1 0.8096 -2.4807 -0.5144 45 1 2.4712 -3.1190 -0.5143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987571179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:53 Heat of formation + Delta-G solvation = -7.698716 kcal Electronic energy + Delta-G solvation = -27915.802697 eV Core-core repulsion = 24061.311941 eV Total energy + Delta-G solvation = -3854.490756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.50692 -39.92945 -37.94932 -37.59042 -34.46186 -33.89125 -32.01339 -30.96818 -30.60490 -29.91287 -28.90223 -25.59690 -25.45322 -24.14744 -22.99590 -22.60892 -20.38921 -19.69218 -18.96027 -18.51102 -18.06252 -17.56991 -17.03633 -16.16838 -15.93022 -15.62955 -15.06314 -14.86278 -14.30915 -14.28025 -14.21779 -14.07632 -13.86147 -13.48741 -13.32330 -13.08490 -12.90397 -12.76175 -12.75474 -12.40031 -12.27384 -12.04455 -11.78964 -11.65840 -11.47605 -11.25371 -11.19682 -10.95051 -10.63621 -10.41668 -10.30102 -10.20439 -10.07720 -9.65856 -9.47323 -9.03735 -8.67180 -8.10558 -7.39592 -5.86797 -3.24026 0.71203 1.13018 1.48804 1.87829 2.38425 2.44272 2.94895 3.31649 3.34997 3.40861 4.12364 4.23025 4.39121 4.50699 4.62769 4.71196 4.78629 4.82189 4.95914 4.98859 5.00199 5.08998 5.19843 5.28045 5.29261 5.39410 5.45472 5.47129 5.50088 5.56169 5.75351 5.78881 5.88904 5.94373 6.07880 6.28743 6.41317 6.42815 6.44005 6.51337 6.75470 7.08027 7.45512 7.87410 8.00631 8.31906 9.08897 9.81355 9.99610 11.30899 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023554 B = 0.002664 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.449627 B =10507.372466 C =10905.054087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.209 4.209 3 S 0.003 5.997 4 C 0.488 3.512 5 O -0.471 6.471 6 N -0.515 5.515 7 C 0.085 3.915 8 C 0.512 3.488 9 O -0.527 6.527 10 N -0.606 5.606 11 C 0.092 3.908 12 C -0.152 4.152 13 C 0.180 3.820 14 H 0.073 0.927 15 N -0.741 5.741 16 C -0.250 4.250 17 H 0.092 0.908 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.878 3.122 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.276 1.276 24 C 0.129 3.871 25 H 0.077 0.923 26 C -0.165 4.165 27 C 0.106 3.894 28 C -0.100 4.100 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.368 0.632 39 H 0.261 0.739 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.457 9.474 15.956 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.329 4.329 3 S 0.247 5.753 4 C 0.170 3.830 5 O -0.350 6.350 6 N -0.235 5.235 7 C -0.044 4.044 8 C 0.298 3.702 9 O -0.404 6.404 10 N -0.340 5.340 11 C -0.031 4.031 12 C -0.193 4.193 13 C 0.069 3.931 14 H 0.091 0.909 15 N -0.386 5.386 16 C -0.380 4.380 17 H 0.110 0.890 18 C -0.186 4.186 19 N -0.576 5.576 20 Si 0.708 3.292 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.202 1.202 24 C 0.025 3.975 25 H 0.095 0.905 26 C -0.223 4.223 27 C -0.004 4.004 28 C -0.159 4.159 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.204 0.796 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.105 11.230 15.423 29.199 hybrid contribution 0.929 -0.305 -0.698 1.201 sum -21.175 10.925 14.726 28.011 Atomic orbital electron populations 1.20105 0.85681 1.03391 1.02728 1.23432 0.99643 0.92070 1.17737 1.85039 0.97807 1.11139 1.81302 1.21494 0.94651 0.84597 0.82230 1.90977 1.19274 1.71671 1.53049 1.45563 1.05748 1.06991 1.65168 1.21686 0.94773 0.91398 0.96510 1.20244 0.79398 0.79572 0.90972 1.90737 1.52147 1.51841 1.45630 1.48626 1.41570 1.34783 1.09066 1.22501 0.94536 0.94825 0.91252 1.23524 0.95369 1.01944 0.98510 1.21133 0.88056 0.95300 0.88614 0.90910 1.42977 1.35644 1.12794 1.47163 1.19035 1.08094 0.91378 1.19444 0.88995 1.24650 0.97994 0.96792 0.99208 1.69693 1.21852 1.28659 1.37413 0.86673 0.78072 0.84525 0.79908 1.20898 1.21486 1.20211 1.21907 0.97740 0.95434 0.82388 0.90539 1.22083 1.01038 0.98369 1.00793 1.19183 0.81775 0.98202 1.01247 1.20771 1.02397 0.89136 1.03606 0.90666 0.90841 0.90295 0.86056 0.85891 0.90989 0.91149 0.90604 0.89833 0.79557 0.92898 0.90705 0.91727 0.92458 0.89532 0.88957 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.10 36.01 0.36 0.06 16 2 C -0.21 -1.83 6.72 -36.21 -0.24 -2.08 16 3 S 0.00 0.04 22.97 -107.50 -2.47 -2.43 16 4 C 0.49 6.95 8.27 53.82 0.45 7.40 16 5 O -0.47 -8.21 17.55 5.08 0.09 -8.12 16 6 N -0.51 -6.02 2.09 -118.56 -0.25 -6.27 16 7 C 0.09 0.88 4.47 -5.19 -0.02 0.86 16 8 C 0.51 7.18 7.44 -10.99 -0.08 7.10 16 9 O -0.53 -9.42 15.37 5.56 0.09 -9.33 16 10 N -0.61 -8.23 3.09 -162.82 -0.50 -8.73 16 11 C 0.09 1.00 6.68 -2.53 -0.02 0.98 16 12 C -0.15 -2.23 6.77 -24.58 -0.17 -2.40 16 13 C 0.18 3.16 3.45 -66.09 -0.23 2.93 16 14 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 15 N -0.74 -16.56 4.82 -51.65 -0.25 -16.81 16 16 C -0.25 -6.68 10.46 -15.06 -0.16 -6.84 16 17 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 18 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 19 N -0.93 -28.37 13.97 55.49 0.78 -27.59 16 20 Si 0.88 21.77 27.74 -169.99 -4.71 17.05 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.46 6.48 56.52 0.37 -6.10 16 24 C 0.13 2.08 3.48 -66.81 -0.23 1.85 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 26 C -0.16 -2.93 7.96 37.16 0.30 -2.64 16 27 C 0.11 0.98 6.59 -82.51 -0.54 0.44 16 28 C -0.10 -0.58 9.07 36.01 0.33 -0.25 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.30 6.77 -51.93 -0.35 -0.05 16 32 H 0.12 0.77 6.83 -51.93 -0.35 0.41 16 33 H 0.12 1.22 7.50 -51.93 -0.39 0.83 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.62 7.47 -51.93 -0.39 0.23 16 36 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.37 8.28 2.81 -40.82 -0.11 8.16 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.07 1.41 6.65 -51.93 -0.35 1.06 16 41 H 0.06 1.19 6.79 -51.93 -0.35 0.83 16 42 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.41 6.69 -51.93 -0.35 0.06 16 45 H 0.07 0.50 6.70 -51.93 -0.35 0.15 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -35.35 373.04 -8.36 -43.70 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.39 Total: 5.32 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.36 Total: 7.60 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.23 Total: -59.41 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.17 Total: -17.45 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.47 Total: -2.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.35 -8.36 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987571179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.002 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds