Wall clock time and date at job start Tue Mar 31 2020 22:27:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 S 1.77231 * 127.34052 * 2 1
4 4 C 1.72202 * 94.84857 * 179.81085 * 3 2 1
5 5 O 1.21826 * 127.06063 * 180.20302 * 4 3 2
6 6 N 1.34249 * 105.88431 * 0.31686 * 4 3 2
7 7 C 1.46496 * 121.37763 * 179.88060 * 6 4 3
8 8 C 1.50694 * 109.47338 * 269.72085 * 7 6 4
9 9 O 1.21289 * 120.00115 * 0.02562 * 8 7 6
10 10 N 1.34778 * 120.00226 * 180.02562 * 8 7 6
11 11 C 1.47423 * 125.65040 * 359.94210 * 10 8 7
12 12 C 1.54904 * 104.83445 * 204.17809 * 11 10 8
13 13 C 1.55157 * 101.58269 * 322.99052 * 12 11 10
14 14 H 1.08998 * 110.71583 * 277.14033 * 13 12 11
15 15 N 1.46500 * 110.71764 * 153.86627 * 13 12 11
16 16 C 1.36941 * 119.99930 * 91.48192 * 15 13 12
17 17 H 1.07992 * 120.00153 * 359.97438 * 16 15 13
18 18 C 1.38808 * 119.99638 * 179.97438 * 16 15 13
19 19 N 1.31616 * 120.00315 * 0.02562 * 18 16 15
20 20 Si 1.86798 * 119.99852 * 179.97438 * 18 16 15
21 21 H 1.48497 * 109.47380 * 0.02562 * 20 18 16
22 22 H 1.48504 * 109.47306 * 120.00303 * 20 18 16
23 23 H 1.48501 * 109.47433 * 240.00401 * 20 18 16
24 24 C 1.47022 * 125.64969 * 180.02562 * 10 8 7
25 25 H 1.09004 * 110.01470 * 59.39708 * 24 10 8
26 26 C 1.53006 * 109.88118 * 298.30990 * 24 10 8
27 27 C 1.32565 * 127.34290 * 179.97438 * 2 1 3
28 28 C 1.50703 * 121.64250 * 0.02562 * 27 2 1
29 29 H 1.09005 * 109.47298 * 269.99742 * 1 2 3
30 30 H 1.08997 * 109.47476 * 29.99930 * 1 2 3
31 31 H 1.09005 * 109.47030 * 150.00586 * 1 2 3
32 32 H 1.09003 * 109.47057 * 149.72371 * 7 6 4
33 33 H 1.09001 * 109.47507 * 29.72318 * 7 6 4
34 34 H 1.08995 * 110.36486 * 85.33335 * 11 10 8
35 35 H 1.09001 * 110.36386 * 323.02110 * 11 10 8
36 36 H 1.09001 * 111.00685 * 204.91431 * 12 11 10
37 37 H 1.08998 * 111.03901 * 81.07980 * 12 11 10
38 38 H 0.97002 * 119.99837 * 271.47314 * 15 13 12
39 39 H 0.97003 * 120.00494 * 179.97438 * 19 18 16
40 40 H 1.09001 * 109.47002 * 302.18921 * 26 24 10
41 41 H 1.08993 * 109.46955 * 62.19358 * 26 24 10
42 42 H 1.09000 * 109.47050 * 182.19187 * 26 24 10
43 43 H 1.08997 * 109.47047 * 269.97396 * 28 27 2
44 44 H 1.09000 * 109.47125 * 29.97571 * 28 27 2
45 45 H 1.09002 * 109.46819 * 149.97999 * 28 27 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 16 2.5820 1.4091 0.0000
4 6 4.0344 0.4840 0.0057
5 8 5.1759 0.9096 0.0113
6 7 3.6507 -0.8024 0.0001
7 6 4.6313 -1.8909 0.0001
8 6 4.9675 -2.2641 -1.4207
9 8 4.4403 -1.6782 -2.3426
10 7 5.8540 -3.2489 -1.6670
11 6 6.5665 -4.0388 -0.6462
12 6 7.8462 -4.5443 -1.3578
13 6 7.3155 -4.8297 -2.7876
14 1 6.8446 -5.8116 -2.8352
15 7 8.3951 -4.7227 -3.7720
16 6 9.1220 -5.8316 -4.1144
17 1 8.8996 -6.7850 -3.6585
18 6 10.1445 -5.7302 -5.0476
19 7 10.4159 -4.5682 -5.6030
20 14 11.1365 -7.2427 -5.5142
21 1 10.6373 -8.4162 -4.7534
22 1 10.9926 -7.4994 -6.9698
23 1 12.5679 -7.0151 -5.1908
24 6 6.2721 -3.7124 -2.9981
25 1 6.7177 -2.8892 -3.5568
26 6 5.0653 -4.2644 -3.7596
27 6 2.3111 -1.0539 0.0005
28 6 1.7706 -2.4607 0.0005
29 1 -0.3634 0.0000 1.0277
30 1 -0.3634 0.8899 -0.5138
31 1 -0.3633 -0.8901 -0.5138
32 1 4.2132 -2.7565 0.5139
33 1 5.5357 -1.5652 0.5139
34 1 5.9544 -4.8807 -0.3227
35 1 6.8287 -3.4103 0.2049
36 1 8.2190 -5.4557 -0.8903
37 1 8.6159 -3.7728 -1.3735
38 1 8.5950 -3.8663 -4.1814
39 1 11.1308 -4.4973 -6.2548
40 1 4.6141 -5.0748 -3.1871
41 1 4.3329 -3.4703 -3.9047
42 1 5.3893 -4.6415 -4.7297
43 1 1.6404 -2.7998 1.0282
44 1 0.8095 -2.4807 -0.5133
45 1 2.4712 -3.1190 -0.5133
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000987571181.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:27:57
Heat of formation + Delta-G solvation = -19.362448 kcal
Electronic energy + Delta-G solvation = -27730.027298 eV
Core-core repulsion = 23875.030765 eV
Total energy + Delta-G solvation = -3854.996533 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 1.53 seconds
Orbital eigenvalues (eV)
-41.44206 -39.78750 -37.87280 -37.40937 -34.23414 -33.84486 -31.93826 -31.03944
-30.40141 -29.74889 -28.76190 -25.40972 -25.29546 -24.02632 -23.08029 -22.38203
-20.44392 -19.94229 -19.06724 -18.45612 -17.59256 -17.27567 -16.93342 -16.14997
-15.86105 -15.56145 -14.88796 -14.74373 -14.29421 -14.20783 -14.08746 -13.82183
-13.67905 -13.48687 -13.29766 -13.08942 -12.87802 -12.80982 -12.70403 -12.36903
-12.16411 -11.92844 -11.71364 -11.61918 -11.26150 -11.14868 -11.10019 -10.89708
-10.67061 -10.30000 -10.24355 -10.15161 -10.02663 -9.80226 -9.42603 -9.00790
-8.55968 -8.05329 -7.09322 -5.86199 -3.17425 0.76563 1.18035 1.53986
1.93920 2.45473 2.52834 3.04602 3.37572 3.42900 3.45690 4.17488
4.31540 4.44826 4.50300 4.67184 4.77487 4.83823 4.91866 4.99846
5.03376 5.13227 5.23422 5.25024 5.33571 5.38325 5.47000 5.49683
5.54580 5.59123 5.69311 5.82370 5.93670 5.99013 6.05449 6.20317
6.36467 6.48505 6.49163 6.52522 6.61117 6.83506 7.14002 7.56239
7.61115 8.10378 8.30544 9.42183 9.96005 10.30386 11.35829
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.025547 B = 0.002442 C = 0.002385
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1095.738540 B =11463.587834 C =11737.728021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 C -0.210 4.210
3 S 0.003 5.997
4 C 0.488 3.512
5 O -0.470 6.470
6 N -0.514 5.514
7 C 0.085 3.915
8 C 0.511 3.489
9 O -0.527 6.527
10 N -0.604 5.604
11 C 0.094 3.906
12 C -0.157 4.157
13 C 0.178 3.822
14 H 0.069 0.931
15 N -0.714 5.714
16 C -0.246 4.246
17 H 0.073 0.927
18 C -0.010 4.010
19 N -0.928 5.928
20 Si 0.909 3.091
21 H -0.280 1.280
22 H -0.291 1.291
23 H -0.291 1.291
24 C 0.125 3.875
25 H 0.078 0.922
26 C -0.153 4.153
27 C 0.107 3.893
28 C -0.100 4.100
29 H 0.074 0.926
30 H 0.073 0.927
31 H 0.078 0.922
32 H 0.120 0.880
33 H 0.123 0.877
34 H 0.069 0.931
35 H 0.069 0.931
36 H 0.078 0.922
37 H 0.076 0.924
38 H 0.386 0.614
39 H 0.257 0.743
40 H 0.050 0.950
41 H 0.059 0.941
42 H 0.071 0.929
43 H 0.086 0.914
44 H 0.092 0.908
45 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.363 4.019 16.717 27.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.330 4.330
3 S 0.247 5.753
4 C 0.170 3.830
5 O -0.349 6.349
6 N -0.234 5.234
7 C -0.044 4.044
8 C 0.297 3.703
9 O -0.404 6.404
10 N -0.339 5.339
11 C -0.030 4.030
12 C -0.198 4.198
13 C 0.066 3.934
14 H 0.086 0.914
15 N -0.354 5.354
16 C -0.377 4.377
17 H 0.091 0.909
18 C -0.206 4.206
19 N -0.576 5.576
20 Si 0.739 3.261
21 H -0.205 1.205
22 H -0.218 1.218
23 H -0.218 1.218
24 C 0.022 3.978
25 H 0.096 0.904
26 C -0.211 4.211
27 C -0.004 4.004
28 C -0.159 4.159
29 H 0.093 0.907
30 H 0.092 0.908
31 H 0.097 0.903
32 H 0.138 0.862
33 H 0.141 0.859
34 H 0.087 0.913
35 H 0.087 0.913
36 H 0.097 0.903
37 H 0.095 0.905
38 H 0.221 0.779
39 H 0.067 0.933
40 H 0.069 0.931
41 H 0.078 0.922
42 H 0.090 0.910
43 H 0.104 0.896
44 H 0.110 0.890
45 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -21.041 5.839 16.168 27.171
hybrid contribution 1.254 -1.863 -0.424 2.285
sum -19.787 3.977 15.744 25.597
Atomic orbital electron populations
1.20099 0.85717 1.03373 1.02684 1.23422 0.99619 0.92094 1.17829
1.85025 0.97830 1.11150 1.81336 1.21488 0.94645 0.84599 0.82234
1.90981 1.19261 1.71648 1.52982 1.45558 1.05739 1.07008 1.65142
1.21686 0.94718 0.91320 0.96654 1.20232 0.79599 0.79602 0.90901
1.90741 1.52021 1.52000 1.45613 1.48542 1.41563 1.34529 1.09247
1.22477 0.94488 0.94721 0.91277 1.23594 0.95420 1.01713 0.99079
1.21226 0.88322 0.95098 0.88760 0.91354 1.42367 1.35854 1.10183
1.46983 1.19239 1.10527 0.88883 1.19015 0.90899 1.24786 0.99489
0.96924 0.99423 1.69675 1.33289 1.22807 1.31786 0.86107 0.79934
0.81997 0.78022 1.20477 1.21779 1.21788 1.22020 0.95631 0.97900
0.82262 0.90405 1.22028 0.97752 1.00585 1.00703 1.19175 0.81801
0.98171 1.01209 1.20768 1.02390 0.89193 1.03552 0.90710 0.90847
0.90323 0.86164 0.85933 0.91293 0.91285 0.90336 0.90533 0.77937
0.93340 0.93103 0.92150 0.90992 0.89586 0.88979 0.90749
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 30.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.33 10.10 36.00 0.36 0.04 16
2 C -0.21 -1.93 6.72 -36.22 -0.24 -2.17 16
3 S 0.00 0.04 22.97 -107.50 -2.47 -2.43 16
4 C 0.49 7.24 8.27 53.82 0.45 7.68 16
5 O -0.47 -8.49 17.55 5.08 0.09 -8.40 16
6 N -0.51 -6.31 2.09 -118.57 -0.25 -6.56 16
7 C 0.09 0.94 4.47 -5.20 -0.02 0.91 16
8 C 0.51 7.60 7.45 -10.99 -0.08 7.52 16
9 O -0.53 -9.92 15.48 5.55 0.09 -9.83 16
10 N -0.60 -8.77 3.06 -163.02 -0.50 -9.27 16
11 C 0.09 1.09 6.69 -2.53 -0.02 1.07 16
12 C -0.16 -2.41 6.77 -24.59 -0.17 -2.57 16
13 C 0.18 3.26 3.14 -66.10 -0.21 3.06 16
14 H 0.07 1.24 7.80 -51.93 -0.41 0.83 16
15 N -0.71 -17.03 5.22 -51.66 -0.27 -17.30 16
16 C -0.25 -6.48 9.96 -15.06 -0.15 -6.63 16
17 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16
18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16
19 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16
20 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16
21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
24 C 0.13 2.16 3.21 -66.95 -0.21 1.95 16
25 H 0.08 1.58 7.71 -51.93 -0.40 1.18 16
26 C -0.15 -2.45 9.10 37.16 0.34 -2.11 16
27 C 0.11 1.03 6.59 -82.51 -0.54 0.49 16
28 C -0.10 -0.62 9.07 36.01 0.33 -0.29 16
29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
31 H 0.08 0.32 6.77 -51.93 -0.35 -0.03 16
32 H 0.12 0.84 6.83 -51.93 -0.35 0.48 16
33 H 0.12 1.30 7.50 -51.93 -0.39 0.91 16
34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16
36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
37 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16
38 H 0.39 10.09 7.56 -40.82 -0.31 9.78 16
39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
41 H 0.06 1.01 6.91 -51.93 -0.36 0.66 16
42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
43 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16
44 H 0.09 0.44 6.69 -51.93 -0.35 0.10 16
45 H 0.07 0.54 6.70 -51.93 -0.35 0.19 16
LS Contribution 380.56 15.07 5.73 5.73
Total: -1.00 -34.63 380.56 -8.72 -43.35
By element:
Atomic # 1 Polarization: 12.81 SS G_CDS: -6.58 Total: 6.23 kcal
Atomic # 6 Polarization: 8.85 SS G_CDS: -0.27 Total: 8.58 kcal
Atomic # 7 Polarization: -59.63 SS G_CDS: -0.29 Total: -59.93 kcal
Atomic # 8 Polarization: -18.41 SS G_CDS: 0.17 Total: -18.23 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal
Atomic # 16 Polarization: 0.04 SS G_CDS: -2.47 Total: -2.43 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -34.63 -8.72 -43.35 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987571181.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.992 kcal
(2) G-P(sol) polarization free energy of solvation -34.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.638 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.362 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.53 seconds