Wall clock time and date at job start Tue Mar 31 2020 22:27:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 S 1.77231 * 127.34052 * 2 1
4 4 C 1.72202 * 94.84857 * 179.81085 * 3 2 1
5 5 O 1.21826 * 127.06063 * 180.20302 * 4 3 2
6 6 N 1.34249 * 105.88431 * 0.31686 * 4 3 2
7 7 C 1.46496 * 121.37763 * 179.88060 * 6 4 3
8 8 C 1.50694 * 109.47338 * 269.72085 * 7 6 4
9 9 O 1.21289 * 120.00115 * 0.02562 * 8 7 6
10 10 N 1.34778 * 120.00226 * 180.02562 * 8 7 6
11 11 C 1.47423 * 125.65040 * 359.94210 * 10 8 7
12 12 C 1.54904 * 104.83445 * 204.17809 * 11 10 8
13 13 C 1.55157 * 101.58269 * 322.99052 * 12 11 10
14 14 H 1.08998 * 110.71583 * 277.14033 * 13 12 11
15 15 N 1.46500 * 110.71764 * 153.86627 * 13 12 11
16 16 C 1.36941 * 119.99930 * 91.48192 * 15 13 12
17 17 H 1.07992 * 120.00153 * 359.97438 * 16 15 13
18 18 C 1.38808 * 119.99638 * 179.97438 * 16 15 13
19 19 N 1.31616 * 120.00315 * 0.02562 * 18 16 15
20 20 Si 1.86798 * 119.99852 * 179.97438 * 18 16 15
21 21 H 1.48497 * 109.47380 * 0.02562 * 20 18 16
22 22 H 1.48504 * 109.47306 * 120.00303 * 20 18 16
23 23 H 1.48501 * 109.47433 * 240.00401 * 20 18 16
24 24 C 1.47022 * 125.64969 * 180.02562 * 10 8 7
25 25 H 1.09004 * 110.01470 * 59.39708 * 24 10 8
26 26 C 1.53006 * 109.88118 * 298.30990 * 24 10 8
27 27 C 1.32565 * 127.34290 * 179.97438 * 2 1 3
28 28 C 1.50703 * 121.64250 * 0.02562 * 27 2 1
29 29 H 1.09005 * 109.47298 * 269.99742 * 1 2 3
30 30 H 1.08997 * 109.47476 * 29.99930 * 1 2 3
31 31 H 1.09005 * 109.47030 * 150.00586 * 1 2 3
32 32 H 1.09003 * 109.47057 * 149.72371 * 7 6 4
33 33 H 1.09001 * 109.47507 * 29.72318 * 7 6 4
34 34 H 1.08995 * 110.36486 * 85.33335 * 11 10 8
35 35 H 1.09001 * 110.36386 * 323.02110 * 11 10 8
36 36 H 1.09001 * 111.00685 * 204.91431 * 12 11 10
37 37 H 1.08998 * 111.03901 * 81.07980 * 12 11 10
38 38 H 0.97002 * 119.99837 * 271.47314 * 15 13 12
39 39 H 0.97003 * 120.00494 * 179.97438 * 19 18 16
40 40 H 1.09001 * 109.47002 * 302.18921 * 26 24 10
41 41 H 1.08993 * 109.46955 * 62.19358 * 26 24 10
42 42 H 1.09000 * 109.47050 * 182.19187 * 26 24 10
43 43 H 1.08997 * 109.47047 * 269.97396 * 28 27 2
44 44 H 1.09000 * 109.47125 * 29.97571 * 28 27 2
45 45 H 1.09002 * 109.46819 * 149.97999 * 28 27 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 16 2.5820 1.4091 0.0000
4 6 4.0344 0.4840 0.0057
5 8 5.1759 0.9096 0.0113
6 7 3.6507 -0.8024 0.0001
7 6 4.6313 -1.8909 0.0001
8 6 4.9675 -2.2641 -1.4207
9 8 4.4403 -1.6782 -2.3426
10 7 5.8540 -3.2489 -1.6670
11 6 6.5665 -4.0388 -0.6462
12 6 7.8462 -4.5443 -1.3578
13 6 7.3155 -4.8297 -2.7876
14 1 6.8446 -5.8116 -2.8352
15 7 8.3951 -4.7227 -3.7720
16 6 9.1220 -5.8316 -4.1144
17 1 8.8996 -6.7850 -3.6585
18 6 10.1445 -5.7302 -5.0476
19 7 10.4159 -4.5682 -5.6030
20 14 11.1365 -7.2427 -5.5142
21 1 10.6373 -8.4162 -4.7534
22 1 10.9926 -7.4994 -6.9698
23 1 12.5679 -7.0151 -5.1908
24 6 6.2721 -3.7124 -2.9981
25 1 6.7177 -2.8892 -3.5568
26 6 5.0653 -4.2644 -3.7596
27 6 2.3111 -1.0539 0.0005
28 6 1.7706 -2.4607 0.0005
29 1 -0.3634 0.0000 1.0277
30 1 -0.3634 0.8899 -0.5138
31 1 -0.3633 -0.8901 -0.5138
32 1 4.2132 -2.7565 0.5139
33 1 5.5357 -1.5652 0.5139
34 1 5.9544 -4.8807 -0.3227
35 1 6.8287 -3.4103 0.2049
36 1 8.2190 -5.4557 -0.8903
37 1 8.6159 -3.7728 -1.3735
38 1 8.5950 -3.8663 -4.1814
39 1 11.1308 -4.4973 -6.2548
40 1 4.6141 -5.0748 -3.1871
41 1 4.3329 -3.4703 -3.9047
42 1 5.3893 -4.6415 -4.7297
43 1 1.6404 -2.7998 1.0282
44 1 0.8095 -2.4807 -0.5133
45 1 2.4712 -3.1190 -0.5133
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000987571181.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:27:56
Heat of formation + Delta-G solvation = -43.015699 kcal
Electronic energy + Delta-G solvation = -27731.052980 eV
Core-core repulsion = 23875.030765 eV
Total energy + Delta-G solvation = -3856.022215 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.39486 -40.98549 -38.97876 -38.64385 -35.96634 -34.64599 -33.51025 -32.38473
-31.48968 -30.63120 -29.84819 -26.88323 -26.12550 -25.15066 -24.67409 -23.51455
-21.74332 -20.96222 -20.25932 -19.27766 -19.21502 -18.57184 -18.01535 -17.40940
-16.94061 -16.59294 -16.51101 -15.93163 -15.52552 -15.43229 -14.96996 -14.88423
-14.81718 -14.61493 -14.45897 -14.07045 -13.80209 -13.61170 -13.51362 -13.45207
-13.26823 -13.12748 -12.96385 -12.83883 -12.69521 -12.58598 -12.42070 -12.16842
-12.07803 -11.87737 -11.74211 -11.57888 -11.30657 -11.18845 -10.93943 -10.41008
-9.77218 -9.05487 -8.91054 -7.95740 -5.26333 -0.19399 0.33582 0.73930
0.99492 1.38816 1.48337 1.49087 1.57522 1.59234 1.95702 2.56057
3.25149 3.39056 3.49799 3.69372 3.71492 3.77748 3.96730 4.02217
4.10179 4.16280 4.24548 4.33134 4.39636 4.48524 4.57649 4.62976
4.68360 4.69886 4.75756 4.89454 4.90311 5.01913 5.04688 5.09765
5.19367 5.22584 5.26824 5.41000 5.43789 5.53687 5.64388 6.14697
6.24198 6.42868 6.94650 7.30175 8.02236 8.25555 9.28174
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.025547 B = 0.002442 C = 0.002385
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1095.738540 B =11463.587834 C =11737.728021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 C -0.200 4.200
3 S -0.008 6.008
4 C 0.466 3.534
5 O -0.524 6.524
6 N -0.514 5.514
7 C 0.090 3.910
8 C 0.508 3.492
9 O -0.575 6.575
10 N -0.603 5.603
11 C 0.100 3.900
12 C -0.151 4.151
13 C 0.172 3.828
14 H 0.081 0.919
15 N -0.731 5.731
16 C -0.233 4.233
17 H 0.088 0.912
18 C -0.080 4.080
19 N -0.974 5.974
20 Si 0.974 3.026
21 H -0.258 1.258
22 H -0.298 1.298
23 H -0.297 1.297
24 C 0.131 3.869
25 H 0.033 0.967
26 C -0.140 4.140
27 C 0.089 3.911
28 C -0.097 4.097
29 H 0.096 0.904
30 H 0.074 0.926
31 H 0.100 0.900
32 H 0.172 0.828
33 H 0.127 0.873
34 H 0.113 0.887
35 H 0.099 0.901
36 H 0.095 0.905
37 H 0.048 0.952
38 H 0.368 0.632
39 H 0.249 0.751
40 H 0.078 0.922
41 H 0.048 0.952
42 H 0.054 0.946
43 H 0.117 0.883
44 H 0.108 0.892
45 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.228 1.294 19.626 31.206
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.319 4.319
3 S 0.236 5.764
4 C 0.149 3.851
5 O -0.407 6.407
6 N -0.234 5.234
7 C -0.038 4.038
8 C 0.296 3.704
9 O -0.455 6.455
10 N -0.337 5.337
11 C -0.022 4.022
12 C -0.192 4.192
13 C 0.062 3.938
14 H 0.099 0.901
15 N -0.370 5.370
16 C -0.365 4.365
17 H 0.106 0.894
18 C -0.271 4.271
19 N -0.625 5.625
20 Si 0.804 3.196
21 H -0.182 1.182
22 H -0.226 1.226
23 H -0.225 1.225
24 C 0.026 3.974
25 H 0.051 0.949
26 C -0.198 4.198
27 C -0.020 4.020
28 C -0.155 4.155
29 H 0.114 0.886
30 H 0.093 0.907
31 H 0.118 0.882
32 H 0.189 0.811
33 H 0.145 0.855
34 H 0.130 0.870
35 H 0.117 0.883
36 H 0.114 0.886
37 H 0.067 0.933
38 H 0.200 0.800
39 H 0.058 0.942
40 H 0.097 0.903
41 H 0.067 0.933
42 H 0.073 0.927
43 H 0.135 0.865
44 H 0.127 0.873
45 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -23.987 3.050 19.158 30.849
hybrid contribution 1.987 -0.970 -1.293 2.561
sum -22.000 2.081 17.865 28.416
Atomic orbital electron populations
1.20306 0.82771 1.04422 1.04397 1.24043 1.01013 0.90048 1.16833
1.85003 0.97764 1.12894 1.80771 1.21914 0.94725 0.85888 0.82544
1.90932 1.21202 1.73030 1.55577 1.45667 1.07102 1.06388 1.64202
1.21866 0.95381 0.92720 0.93872 1.20960 0.78730 0.78576 0.92178
1.90722 1.53879 1.53382 1.47486 1.48566 1.41594 1.34880 1.08627
1.22703 0.92681 0.96210 0.90579 1.23412 0.96684 1.01830 0.97273
1.21460 0.87282 0.95881 0.89137 0.90139 1.42582 1.37253 1.08828
1.48326 1.19688 1.09513 0.89834 1.17447 0.89446 1.25626 1.01478
0.99548 1.00492 1.69853 1.34306 1.25143 1.33183 0.85055 0.77924
0.79425 0.77229 1.18176 1.22575 1.22494 1.21688 0.95745 0.96138
0.83806 0.94872 1.21898 0.96879 1.00892 1.00154 1.19849 0.80611
1.00236 1.01275 1.20941 1.02616 0.86307 1.05674 0.88557 0.90739
0.88180 0.81061 0.85538 0.86955 0.88309 0.88636 0.93314 0.80015
0.94192 0.90268 0.93254 0.92652 0.86455 0.87318 0.91426
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.44 10.10 71.23 0.72 0.28 16
2 C -0.20 -3.21 6.72 24.53 0.16 -3.05 16
3 S -0.01 -0.19 22.97 -56.49 -1.30 -1.49 16
4 C 0.47 14.04 8.27 129.87 1.07 15.12 16
5 O -0.52 -19.91 17.55 -4.75 -0.08 -20.00 16
6 N -0.51 -11.88 2.09 -647.52 -1.35 -13.23 16
7 C 0.09 1.74 4.47 85.63 0.38 2.12 16
8 C 0.51 14.48 7.45 87.65 0.65 15.13 16
9 O -0.58 -21.89 15.48 -3.06 -0.05 -21.94 16
10 N -0.60 -16.48 3.06 -788.06 -2.42 -18.90 16
11 C 0.10 1.93 6.69 86.85 0.58 2.51 16
12 C -0.15 -4.35 6.77 31.98 0.22 -4.13 16
13 C 0.17 6.18 3.14 46.18 0.14 6.32 16
14 H 0.08 2.72 7.80 -2.39 -0.02 2.70 16
15 N -0.73 -35.66 5.22 -317.34 -1.66 -37.32 16
16 C -0.23 -12.29 9.96 84.03 0.84 -11.46 16
17 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16
18 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16
19 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16
20 Si 0.97 45.11 29.55 68.60 2.03 47.14 16
21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16
22 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16
23 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16
24 C 0.13 4.55 3.21 45.34 0.15 4.69 16
25 H 0.03 1.44 7.71 -2.38 -0.02 1.42 16
26 C -0.14 -4.44 9.10 71.98 0.65 -3.79 16
27 C 0.09 1.48 6.59 40.71 0.27 1.75 16
28 C -0.10 -0.76 9.07 71.24 0.65 -0.11 16
29 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16
30 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16
31 H 0.10 0.37 6.77 -2.38 -0.02 0.36 16
32 H 0.17 1.48 6.83 -2.39 -0.02 1.47 16
33 H 0.13 2.42 7.50 -2.39 -0.02 2.40 16
34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16
35 H 0.10 1.42 7.48 -2.39 -0.02 1.41 16
36 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16
37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
38 H 0.37 20.33 7.56 -92.71 -0.70 19.63 16
39 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16
40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
41 H 0.05 1.67 6.91 -2.39 -0.02 1.65 16
42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16
43 H 0.12 0.21 8.14 -2.39 -0.02 0.20 16
44 H 0.11 0.51 6.69 -2.39 -0.02 0.50 16
45 H 0.07 0.67 6.70 -2.39 -0.02 0.65 16
Total: -1.00 -82.53 380.56 2.73 -79.80
By element:
Atomic # 1 Polarization: 23.99 SS G_CDS: 0.32 Total: 24.30 kcal
Atomic # 6 Polarization: 14.42 SS G_CDS: 6.96 Total: 21.38 kcal
Atomic # 7 Polarization: -124.05 SS G_CDS: -5.14 Total: -129.19 kcal
Atomic # 8 Polarization: -41.81 SS G_CDS: -0.13 Total: -41.94 kcal
Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal
Atomic # 16 Polarization: -0.19 SS G_CDS: -1.30 Total: -1.49 kcal
Total: -82.53 2.73 -79.80 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987571181.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.786 kcal
(2) G-P(sol) polarization free energy of solvation -82.531 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.744 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.802 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.016 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds