Wall clock time and date at job start Tue Mar 31 2020 22:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32567 * 121.64582 * 2 1 4 4 S 1.77230 * 105.31764 * 180.19295 * 3 2 1 5 5 C 1.72202 * 94.84934 * 359.76172 * 4 3 2 6 6 O 1.21825 * 127.06167 * 179.97438 * 5 4 3 7 7 N 1.34241 * 105.88372 * 359.97438 * 5 4 3 8 8 C 1.46501 * 121.38281 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47245 * 90.02205 * 8 7 5 10 10 C 1.50700 * 109.47634 * 180.02562 * 9 8 7 11 11 O 1.21292 * 119.99536 * 0.02562 * 10 9 8 12 12 N 1.34766 * 120.00502 * 180.02562 * 10 9 8 13 13 C 1.47029 * 125.64926 * 0.03854 * 12 10 9 14 14 C 1.54325 * 107.27089 * 181.02697 * 13 12 10 15 15 H 1.09006 * 110.86699 * 263.75598 * 14 13 12 16 16 N 1.46504 * 110.71678 * 140.55927 * 14 13 12 17 17 C 1.36935 * 119.99849 * 91.47720 * 16 14 13 18 18 H 1.07997 * 120.00561 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99619 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00303 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 119.99829 * 21 19 17 24 24 H 1.48498 * 109.47295 * 240.00436 * 21 19 17 25 25 C 1.55152 * 102.94540 * 22.19449 * 14 13 12 26 26 C 1.47429 * 125.65317 * 180.02562 * 12 10 9 27 27 H 1.09003 * 110.36522 * 274.74369 * 26 12 10 28 28 C 1.53004 * 110.45764 * 37.01445 * 26 12 10 29 29 H 1.09006 * 109.47193 * 270.24583 * 1 2 3 30 30 H 1.09005 * 109.47450 * 30.24294 * 1 2 3 31 31 H 1.08997 * 109.47373 * 150.23922 * 1 2 3 32 32 H 1.08003 * 127.34385 * 359.93705 * 3 2 1 33 33 H 1.09002 * 109.47210 * 330.02254 * 8 7 5 34 34 H 1.08999 * 109.47640 * 210.02122 * 8 7 5 35 35 H 1.09002 * 109.47343 * 60.00304 * 9 8 7 36 36 H 1.08999 * 109.47463 * 300.00622 * 9 8 7 37 37 H 1.08996 * 109.87779 * 61.60557 * 13 12 10 38 38 H 1.08999 * 109.88014 * 300.44232 * 13 12 10 39 39 H 0.96996 * 119.99617 * 271.47406 * 16 14 13 40 40 H 0.97000 * 119.99517 * 0.02562 * 20 19 17 41 41 H 1.08995 * 111.00862 * 82.56872 * 25 14 13 42 42 H 1.09002 * 111.00248 * 206.42649 * 25 14 13 43 43 H 1.08994 * 109.46915 * 175.46431 * 28 26 12 44 44 H 1.08994 * 109.47156 * 295.47240 * 28 26 12 45 45 H 1.08998 * 109.46845 * 55.47121 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6303 -0.0058 5 6 3.5606 -1.0573 -0.0006 6 8 4.3672 -1.9703 -0.0023 7 7 2.2222 -1.1604 0.0056 8 6 1.5576 -2.4660 0.0108 9 6 1.3323 -2.9178 1.4550 10 6 0.6492 -4.2611 1.4605 11 8 0.3705 -4.8039 0.4122 12 7 0.3480 -4.8593 2.6300 13 6 0.6269 -4.3157 3.9673 14 6 0.1317 -5.3538 4.9963 15 1 -0.8700 -5.1053 5.3472 16 7 1.0637 -5.4527 6.1223 17 6 0.8832 -4.6700 7.2313 18 1 0.0541 -3.9794 7.2757 19 6 1.7660 -4.7642 8.2983 20 7 2.7762 -5.6062 8.2445 21 14 1.5203 -3.6959 9.8109 22 1 0.3203 -2.8413 9.6237 23 1 1.3299 -4.5613 11.0026 24 1 2.7148 -2.8362 10.0091 25 6 0.1157 -6.6727 4.1793 26 6 -0.3160 -6.1669 2.7804 27 1 -1.3988 -6.0498 2.7371 28 6 0.1576 -7.1352 1.6945 29 1 -0.3634 0.0044 1.0277 30 1 -0.3634 0.8878 -0.5176 31 1 -0.3634 -0.8921 -0.5101 32 1 1.8153 2.1368 -0.0009 33 1 2.1838 -3.1945 -0.5043 34 1 0.5975 -2.3871 -0.4992 35 1 0.7060 -2.1894 1.9702 36 1 2.2923 -2.9967 1.9651 37 1 0.0936 -3.3749 4.1036 38 1 1.6987 -4.1574 4.0869 39 1 1.8085 -6.0728 6.0822 40 1 2.9039 -6.1606 7.4589 41 1 1.1082 -7.1218 4.1428 42 1 -0.6142 -7.3740 4.5838 43 1 -0.2804 -8.1181 1.8679 44 1 -0.1537 -6.7658 0.7174 45 1 1.2445 -7.2115 1.7246 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988968702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:03 Heat of formation + Delta-G solvation = -22.021367 kcal Electronic energy + Delta-G solvation = -27484.259927 eV Core-core repulsion = 23629.148095 eV Total energy + Delta-G solvation = -3855.111833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.33113 -40.08381 -37.83391 -37.57735 -34.57394 -33.72221 -32.11284 -31.52213 -31.09184 -28.48422 -28.16748 -25.56580 -25.21107 -23.82979 -23.38707 -21.73809 -20.62080 -20.40103 -18.89474 -18.33145 -17.64670 -17.41122 -16.64631 -16.46514 -16.17463 -15.46775 -15.29065 -14.91996 -14.56619 -14.30763 -14.02654 -13.96016 -13.89248 -13.57915 -13.51914 -13.11352 -13.00859 -12.86538 -12.57223 -12.25151 -12.02159 -11.92526 -11.69889 -11.49022 -11.38233 -11.22522 -11.05766 -10.77281 -10.62059 -10.40938 -10.26952 -10.12294 -9.91894 -9.57101 -9.31004 -9.07539 -8.50262 -8.20485 -7.24162 -6.23925 -3.27251 0.72598 1.11389 1.54459 1.90740 2.44489 2.61511 3.08508 3.44651 3.50783 3.59826 4.13788 4.44863 4.46900 4.53237 4.59356 4.71661 4.94204 4.97155 5.00946 5.06530 5.09585 5.15631 5.20060 5.31154 5.34486 5.40859 5.49592 5.54625 5.64626 5.69607 5.73410 5.85268 5.91633 5.95294 6.04255 6.25226 6.31990 6.35392 6.47037 6.53703 6.68656 7.09126 7.62028 7.68197 8.16980 8.61459 9.04626 9.91349 10.04368 11.23736 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009613 B = 0.003163 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.155946 B = 8849.308919 C =10658.471820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.104 3.896 3 C -0.241 4.241 4 S -0.002 6.002 5 C 0.480 3.520 6 O -0.468 6.468 7 N -0.533 5.533 8 C 0.118 3.882 9 C -0.154 4.154 10 C 0.536 3.464 11 O -0.551 6.551 12 N -0.606 5.606 13 C 0.072 3.928 14 C 0.178 3.822 15 H 0.070 0.930 16 N -0.724 5.724 17 C -0.344 4.344 18 H 0.068 0.932 19 C -0.039 4.039 20 N -0.939 5.939 21 Si 1.085 2.915 22 H -0.294 1.294 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.140 4.140 26 C 0.137 3.863 27 H 0.074 0.926 28 C -0.160 4.160 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.192 0.808 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.370 0.630 40 H 0.257 0.743 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.464 11.089 -18.205 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.007 4.007 3 C -0.379 4.379 4 S 0.241 5.759 5 C 0.161 3.839 6 O -0.347 6.347 7 N -0.254 5.254 8 C -0.007 4.007 9 C -0.195 4.195 10 C 0.323 3.677 11 O -0.430 6.430 12 N -0.340 5.340 13 C -0.054 4.054 14 C 0.066 3.934 15 H 0.088 0.912 16 N -0.365 5.365 17 C -0.474 4.474 18 H 0.086 0.914 19 C -0.237 4.237 20 N -0.583 5.583 21 Si 0.916 3.084 22 H -0.220 1.220 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.179 4.179 26 C 0.034 3.966 27 H 0.092 0.908 28 C -0.218 4.218 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.209 0.791 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.204 0.796 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.447 11.433 -17.245 21.395 hybrid contribution -1.470 -1.099 -1.303 2.251 sum -6.917 10.333 -18.548 22.330 Atomic orbital electron populations 1.20835 0.86596 1.04585 1.04269 1.19474 0.95904 0.84905 1.00420 1.24891 0.93188 1.01295 1.18516 1.85195 1.08516 1.01269 1.80908 1.21629 0.83781 0.95745 0.82701 1.90997 1.48568 1.42365 1.52759 1.46152 1.06408 1.07859 1.64959 1.21624 0.99834 0.82290 0.96923 1.21936 1.03292 0.95955 0.98278 1.19826 0.78804 0.86371 0.82650 1.90641 1.55358 1.66060 1.30963 1.48631 1.58608 1.20610 1.06135 1.23340 1.01617 0.99193 0.81245 1.21094 0.94460 0.91047 0.86803 0.91198 1.42406 1.31020 1.48031 1.15042 1.20109 1.12671 1.18753 0.95891 0.91403 1.25819 0.94811 1.01596 1.01475 1.70831 1.30735 1.25353 1.31356 0.83162 0.75035 0.75040 0.75208 1.22012 1.21860 1.21869 1.23201 1.02408 0.98806 0.93454 1.21867 0.96404 0.82649 0.95688 0.90829 1.22120 1.01491 0.98150 1.00003 0.89408 0.89076 0.90257 0.79125 0.87854 0.87888 0.88385 0.88195 0.92130 0.91041 0.79594 0.93180 0.90704 0.90044 0.92250 0.90036 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 9.69 36.00 0.35 -0.17 16 2 C 0.10 0.84 6.59 -82.51 -0.54 0.29 16 3 C -0.24 -1.80 11.25 28.83 0.32 -1.48 16 4 S 0.00 -0.02 22.97 -107.50 -2.47 -2.49 16 5 C 0.48 6.44 8.27 53.82 0.45 6.88 16 6 O -0.47 -7.95 17.55 5.08 0.09 -7.86 16 7 N -0.53 -5.77 2.60 -117.29 -0.31 -6.08 16 8 C 0.12 1.29 4.56 -4.04 -0.02 1.28 16 9 C -0.15 -1.84 5.22 -27.88 -0.15 -1.98 16 10 C 0.54 7.69 7.63 -10.99 -0.08 7.61 16 11 O -0.55 -8.82 13.71 5.55 0.08 -8.75 16 12 N -0.61 -8.98 3.24 -163.05 -0.53 -9.51 16 13 C 0.07 1.17 6.24 -3.06 -0.02 1.15 16 14 C 0.18 3.23 3.61 -66.10 -0.24 2.99 16 15 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 16 N -0.72 -16.81 5.15 -51.65 -0.27 -17.08 16 17 C -0.34 -9.05 9.96 -15.06 -0.15 -9.20 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.04 -1.07 5.50 -17.43 -0.10 -1.17 16 20 N -0.94 -28.04 13.70 55.49 0.76 -27.28 16 21 Si 1.08 24.94 29.92 -169.99 -5.09 19.85 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.14 -2.13 6.13 -24.60 -0.15 -2.28 16 26 C 0.14 1.93 3.76 -66.42 -0.25 1.68 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 C -0.16 -2.17 8.60 37.16 0.32 -1.85 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.27 8.10 -51.93 -0.42 -0.15 16 31 H 0.08 0.40 6.18 -51.93 -0.32 0.08 16 32 H 0.19 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.10 1.32 7.76 -51.93 -0.40 0.92 16 34 H 0.10 0.93 6.07 -51.93 -0.32 0.62 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 39 H 0.37 9.01 6.59 -40.82 -0.27 8.74 16 40 H 0.26 7.55 6.77 -40.82 -0.28 7.28 16 41 H 0.07 1.21 7.92 -51.93 -0.41 0.80 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.20 6.10 -51.93 -0.32 0.88 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -32.80 379.81 -8.85 -41.65 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.58 Total: 8.05 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.26 Total: 3.75 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.34 Total: -59.94 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.17 Total: -16.61 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.09 Total: 19.85 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.49 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.80 -8.85 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988968702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.628 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds