Wall clock time and date at job start Tue Mar 31 2020 22:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32567 * 121.64582 * 2 1 4 4 S 1.77230 * 105.31764 * 180.19295 * 3 2 1 5 5 C 1.72202 * 94.84934 * 359.76172 * 4 3 2 6 6 O 1.21825 * 127.06167 * 179.97438 * 5 4 3 7 7 N 1.34241 * 105.88372 * 359.97438 * 5 4 3 8 8 C 1.46501 * 121.38281 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47245 * 90.02205 * 8 7 5 10 10 C 1.50700 * 109.47634 * 180.02562 * 9 8 7 11 11 O 1.21292 * 119.99536 * 0.02562 * 10 9 8 12 12 N 1.34766 * 120.00502 * 180.02562 * 10 9 8 13 13 C 1.47029 * 125.64926 * 0.03854 * 12 10 9 14 14 C 1.54325 * 107.27089 * 181.02697 * 13 12 10 15 15 H 1.09006 * 110.86699 * 263.75598 * 14 13 12 16 16 N 1.46504 * 110.71678 * 140.55927 * 14 13 12 17 17 C 1.36935 * 119.99849 * 91.47720 * 16 14 13 18 18 H 1.07997 * 120.00561 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99619 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00303 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 119.99829 * 21 19 17 24 24 H 1.48498 * 109.47295 * 240.00436 * 21 19 17 25 25 C 1.55152 * 102.94540 * 22.19449 * 14 13 12 26 26 C 1.47429 * 125.65317 * 180.02562 * 12 10 9 27 27 H 1.09003 * 110.36522 * 274.74369 * 26 12 10 28 28 C 1.53004 * 110.45764 * 37.01445 * 26 12 10 29 29 H 1.09006 * 109.47193 * 270.24583 * 1 2 3 30 30 H 1.09005 * 109.47450 * 30.24294 * 1 2 3 31 31 H 1.08997 * 109.47373 * 150.23922 * 1 2 3 32 32 H 1.08003 * 127.34385 * 359.93705 * 3 2 1 33 33 H 1.09002 * 109.47210 * 330.02254 * 8 7 5 34 34 H 1.08999 * 109.47640 * 210.02122 * 8 7 5 35 35 H 1.09002 * 109.47343 * 60.00304 * 9 8 7 36 36 H 1.08999 * 109.47463 * 300.00622 * 9 8 7 37 37 H 1.08996 * 109.87779 * 61.60557 * 13 12 10 38 38 H 1.08999 * 109.88014 * 300.44232 * 13 12 10 39 39 H 0.96996 * 119.99617 * 271.47406 * 16 14 13 40 40 H 0.97000 * 119.99517 * 0.02562 * 20 19 17 41 41 H 1.08995 * 111.00862 * 82.56872 * 25 14 13 42 42 H 1.09002 * 111.00248 * 206.42649 * 25 14 13 43 43 H 1.08994 * 109.46915 * 175.46431 * 28 26 12 44 44 H 1.08994 * 109.47156 * 295.47240 * 28 26 12 45 45 H 1.08998 * 109.46845 * 55.47121 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6303 -0.0058 5 6 3.5606 -1.0573 -0.0006 6 8 4.3672 -1.9703 -0.0023 7 7 2.2222 -1.1604 0.0056 8 6 1.5576 -2.4660 0.0108 9 6 1.3323 -2.9178 1.4550 10 6 0.6492 -4.2611 1.4605 11 8 0.3705 -4.8039 0.4122 12 7 0.3480 -4.8593 2.6300 13 6 0.6269 -4.3157 3.9673 14 6 0.1317 -5.3538 4.9963 15 1 -0.8700 -5.1053 5.3472 16 7 1.0637 -5.4527 6.1223 17 6 0.8832 -4.6700 7.2313 18 1 0.0541 -3.9794 7.2757 19 6 1.7660 -4.7642 8.2983 20 7 2.7762 -5.6062 8.2445 21 14 1.5203 -3.6959 9.8109 22 1 0.3203 -2.8413 9.6237 23 1 1.3299 -4.5613 11.0026 24 1 2.7148 -2.8362 10.0091 25 6 0.1157 -6.6727 4.1793 26 6 -0.3160 -6.1669 2.7804 27 1 -1.3988 -6.0498 2.7371 28 6 0.1576 -7.1352 1.6945 29 1 -0.3634 0.0044 1.0277 30 1 -0.3634 0.8878 -0.5176 31 1 -0.3634 -0.8921 -0.5101 32 1 1.8153 2.1368 -0.0009 33 1 2.1838 -3.1945 -0.5043 34 1 0.5975 -2.3871 -0.4992 35 1 0.7060 -2.1894 1.9702 36 1 2.2923 -2.9967 1.9651 37 1 0.0936 -3.3749 4.1036 38 1 1.6987 -4.1574 4.0869 39 1 1.8085 -6.0728 6.0822 40 1 2.9039 -6.1606 7.4589 41 1 1.1082 -7.1218 4.1428 42 1 -0.6142 -7.3740 4.5838 43 1 -0.2804 -8.1181 1.8679 44 1 -0.1537 -6.7658 0.7174 45 1 1.2445 -7.2115 1.7246 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988968702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:03 Heat of formation + Delta-G solvation = -43.039018 kcal Electronic energy + Delta-G solvation = -27485.171321 eV Core-core repulsion = 23629.148095 eV Total energy + Delta-G solvation = -3856.023226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.21179 -41.28481 -38.99245 -38.71137 -36.33846 -34.64747 -33.34739 -33.02409 -31.96785 -29.94428 -29.06289 -26.77837 -26.19016 -25.63736 -24.38508 -22.93653 -21.96414 -21.33204 -20.11175 -19.42450 -19.10620 -18.54812 -17.81279 -17.49512 -17.28388 -16.76369 -16.50112 -16.14354 -15.90034 -15.54884 -15.26147 -15.05524 -14.72450 -14.60599 -14.56704 -14.33067 -14.15093 -13.81658 -13.60918 -13.30916 -13.21778 -13.14197 -12.77396 -12.66561 -12.51467 -12.42166 -12.33497 -12.12249 -12.09935 -11.83680 -11.79610 -11.27923 -11.24269 -11.07213 -10.83090 -10.59385 -9.74845 -9.20289 -9.00799 -8.39235 -5.36489 -0.17554 0.33483 0.83146 1.06461 1.43800 1.58474 1.60788 1.71179 1.82066 1.96321 2.71147 3.21894 3.36692 3.53335 3.56079 3.60702 3.72030 3.75845 3.84661 4.07745 4.09857 4.19540 4.21787 4.34989 4.35746 4.41050 4.50632 4.60425 4.64077 4.68519 4.74815 4.75660 4.77482 4.98053 5.01343 5.04393 5.15329 5.21465 5.27751 5.42884 5.61410 5.69184 6.17954 6.40929 6.48068 6.98355 7.05032 7.93924 8.06077 9.12073 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009613 B = 0.003163 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.155946 B = 8849.308919 C =10658.471820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.089 3.911 3 C -0.221 4.221 4 S -0.004 6.004 5 C 0.457 3.543 6 O -0.525 6.525 7 N -0.530 5.530 8 C 0.124 3.876 9 C -0.144 4.144 10 C 0.535 3.465 11 O -0.565 6.565 12 N -0.608 5.608 13 C 0.088 3.912 14 C 0.170 3.830 15 H 0.077 0.923 16 N -0.738 5.738 17 C -0.331 4.331 18 H 0.076 0.924 19 C -0.101 4.101 20 N -0.977 5.977 21 Si 1.129 2.871 22 H -0.265 1.265 23 H -0.294 1.294 24 H -0.296 1.296 25 C -0.130 4.130 26 C 0.138 3.862 27 H 0.094 0.906 28 C -0.152 4.152 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.231 0.769 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.360 0.640 40 H 0.244 0.756 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 13.339 -18.813 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.020 4.020 3 C -0.358 4.358 4 S 0.239 5.761 5 C 0.141 3.859 6 O -0.409 6.409 7 N -0.251 5.251 8 C -0.001 4.001 9 C -0.185 4.185 10 C 0.324 3.676 11 O -0.445 6.445 12 N -0.342 5.342 13 C -0.038 4.038 14 C 0.060 3.940 15 H 0.095 0.905 16 N -0.379 5.379 17 C -0.462 4.462 18 H 0.094 0.906 19 C -0.293 4.293 20 N -0.625 5.625 21 Si 0.954 3.046 22 H -0.190 1.190 23 H -0.221 1.221 24 H -0.223 1.223 25 C -0.168 4.168 26 C 0.035 3.965 27 H 0.112 0.888 28 C -0.210 4.210 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.098 0.902 32 H 0.248 0.752 33 H 0.095 0.905 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.192 0.808 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.616 13.729 -17.911 24.156 hybrid contribution -0.584 -1.746 -1.229 2.213 sum -9.200 11.984 -19.140 24.384 Atomic orbital electron populations 1.20980 0.83743 1.05992 1.05232 1.20070 0.97502 0.83830 1.00562 1.25466 0.90460 1.02813 1.17013 1.85197 1.11584 0.99092 1.80223 1.22083 0.84402 0.96448 0.82985 1.90950 1.50147 1.44361 1.55427 1.46198 1.05834 1.08784 1.64235 1.21528 1.00286 0.82107 0.96155 1.21869 1.02258 0.95317 0.99036 1.20144 0.78367 0.86923 0.82132 1.90639 1.55953 1.66622 1.31317 1.48647 1.58860 1.20968 1.05687 1.22928 1.00149 0.99217 0.81541 1.21318 0.93506 0.93151 0.86031 0.90539 1.42582 1.31693 1.47646 1.15974 1.20465 1.11735 1.17775 0.96249 0.90604 1.27137 0.94830 1.02652 1.04667 1.70945 1.32824 1.27394 1.31365 0.82598 0.75807 0.73930 0.72219 1.18979 1.22090 1.22294 1.23112 1.02264 0.97684 0.93790 1.21970 0.97421 0.82288 0.94798 0.88772 1.22039 1.00382 0.99243 0.99299 0.88521 0.86305 0.90227 0.75244 0.90451 0.85434 0.85974 0.90313 0.90449 0.93543 0.80754 0.94501 0.92114 0.88390 0.89979 0.90893 0.94586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 9.69 71.23 0.69 0.10 16 2 C 0.09 1.20 6.59 40.71 0.27 1.47 16 3 C -0.22 -2.59 11.25 66.67 0.75 -1.84 16 4 S 0.00 -0.08 22.97 -56.49 -1.30 -1.38 16 5 C 0.46 12.65 8.27 129.87 1.07 13.73 16 6 O -0.52 -19.19 17.55 -4.75 -0.08 -19.27 16 7 N -0.53 -11.12 2.60 -643.44 -1.68 -12.80 16 8 C 0.12 2.67 4.56 86.38 0.39 3.06 16 9 C -0.14 -3.35 5.22 29.85 0.16 -3.20 16 10 C 0.54 14.90 7.63 87.66 0.67 15.57 16 11 O -0.56 -17.60 13.71 -3.07 -0.04 -17.64 16 12 N -0.61 -17.27 3.24 -788.16 -2.56 -19.83 16 13 C 0.09 2.77 6.24 86.73 0.54 3.31 16 14 C 0.17 5.97 3.61 46.18 0.17 6.14 16 15 H 0.08 2.61 8.09 -2.38 -0.02 2.59 16 16 N -0.74 -34.41 5.15 -317.32 -1.63 -36.04 16 17 C -0.33 -17.27 9.96 84.03 0.84 -16.43 16 18 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 19 C -0.10 -5.64 5.50 84.86 0.47 -5.17 16 20 N -0.98 -59.78 13.70 21.65 0.30 -59.48 16 21 Si 1.13 49.91 29.92 68.60 2.05 51.96 16 22 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 25 C -0.13 -3.80 6.13 31.98 0.20 -3.61 16 26 C 0.14 3.62 3.76 45.46 0.17 3.79 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 C -0.15 -3.93 8.60 71.98 0.62 -3.31 16 29 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.12 0.08 8.10 -2.38 -0.02 0.06 16 31 H 0.08 0.50 6.18 -2.39 -0.01 0.49 16 32 H 0.23 0.82 8.06 -2.91 -0.02 0.80 16 33 H 0.08 2.08 7.76 -2.39 -0.02 2.06 16 34 H 0.13 2.08 6.07 -2.39 -0.01 2.06 16 35 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 1.71 8.03 -2.39 -0.02 1.70 16 39 H 0.36 18.07 6.59 -92.71 -0.61 17.46 16 40 H 0.24 14.93 6.77 -92.71 -0.63 14.31 16 41 H 0.06 1.97 7.92 -2.39 -0.02 1.95 16 42 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 2.05 6.10 -2.39 -0.01 2.03 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -74.15 379.81 2.60 -71.55 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.54 Total: 29.34 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 7.00 Total: 13.60 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -5.57 Total: -128.15 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.13 Total: -36.92 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.30 Total: -1.38 kcal Total: -74.15 2.60 -71.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988968702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.508 kcal (2) G-P(sol) polarization free energy of solvation -74.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds