Wall clock time and date at job start Tue Mar 31 2020 22:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99833 * 2 1 4 4 C 1.50699 * 109.47393 * 180.02562 * 3 2 1 5 5 N 1.29424 * 124.80554 * 90.02031 * 4 3 2 6 6 C 1.30942 * 117.36621 * 180.02562 * 5 4 3 7 7 C 1.50700 * 122.90820 * 179.97438 * 6 5 4 8 8 C 1.35667 * 114.18959 * 0.02562 * 6 5 4 9 9 C 1.46682 * 126.13180 * 179.97438 * 8 6 5 10 10 O 1.21682 * 119.99699 * 0.02562 * 9 8 6 11 11 N 1.34772 * 120.00133 * 179.97438 * 9 8 6 12 12 C 1.47189 * 125.73400 * 0.05799 * 11 9 8 13 13 C 1.54328 * 107.29071 * 179.03874 * 12 11 9 14 14 H 1.09006 * 110.87026 * 96.15366 * 13 12 11 15 15 N 1.46496 * 110.71897 * 219.35001 * 13 12 11 16 16 C 1.36940 * 120.00378 * 268.52220 * 15 13 12 17 17 H 1.08002 * 119.99797 * 0.02562 * 16 15 13 18 18 C 1.38811 * 119.99931 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00312 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99741 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47079 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47268 * 120.00161 * 20 18 16 23 23 H 1.48502 * 109.46691 * 239.99884 * 20 18 16 24 24 C 1.55157 * 102.94570 * 337.71639 * 13 12 11 25 25 C 1.47419 * 125.65172 * 180.02562 * 11 9 8 26 26 H 1.08999 * 110.36809 * 85.14469 * 25 11 9 27 27 C 1.53006 * 110.36530 * 322.93733 * 25 11 9 28 28 S 1.70960 * 124.80113 * 270.34075 * 4 3 2 29 29 H 1.09001 * 109.47276 * 60.00263 * 1 2 3 30 30 H 1.08995 * 109.46893 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47138 * 299.99654 * 1 2 3 32 32 H 1.09003 * 109.47129 * 59.99875 * 3 2 1 33 33 H 1.09005 * 109.47160 * 300.00400 * 3 2 1 34 34 H 1.09000 * 109.46823 * 270.03902 * 7 6 5 35 35 H 1.08999 * 109.46656 * 30.03322 * 7 6 5 36 36 H 1.08996 * 109.47232 * 150.03564 * 7 6 5 37 37 H 1.08996 * 109.94629 * 59.57865 * 12 11 9 38 38 H 1.08999 * 109.92472 * 298.49187 * 12 11 9 39 39 H 0.97006 * 119.99932 * 88.52990 * 15 13 12 40 40 H 0.97000 * 120.00275 * 180.02562 * 19 18 16 41 41 H 1.09000 * 111.00357 * 277.42671 * 24 13 12 42 42 H 1.09003 * 111.00200 * 153.57019 * 24 13 12 43 43 H 1.09001 * 109.47002 * 302.93281 * 27 25 11 44 44 H 1.08993 * 109.46955 * 62.93718 * 27 25 11 45 45 H 1.09000 * 109.47050 * 182.93547 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2486 1.1289 -1.0636 6 6 5.5430 1.0259 -0.8946 7 6 6.5151 0.9489 -2.0436 8 6 5.9331 0.9933 0.4043 9 6 7.3126 0.8826 0.8905 10 8 8.2330 0.8104 0.0979 11 7 7.5607 0.8619 2.2150 12 6 6.5483 0.9410 3.2805 13 6 7.2940 0.8561 4.6290 14 1 7.4786 1.8512 5.0340 15 7 6.5429 0.0403 5.5862 16 6 5.6423 0.6316 6.4315 17 1 5.4854 1.6994 6.3922 18 6 4.9310 -0.1415 7.3388 19 7 5.1225 -1.4428 7.3871 20 14 3.7019 0.6651 8.4914 21 1 3.6733 2.1282 8.2392 22 1 2.3516 0.0947 8.2531 23 1 4.1042 0.4136 9.8986 24 6 8.6283 0.1633 4.2454 25 6 8.8924 0.7554 2.8382 26 1 9.3524 1.7402 2.9210 27 6 9.7873 -0.1824 2.0254 28 16 4.4851 1.1010 1.4027 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 6.6674 -0.0941 -2.3213 35 1 6.1140 1.4970 -2.8961 36 1 7.4668 1.3879 -1.7444 37 1 5.8486 0.1101 3.1910 38 1 6.0110 1.8869 3.2129 39 1 6.6835 -0.9189 5.6214 40 1 4.6251 -1.9831 8.0209 41 1 8.5070 -0.9189 4.1978 42 1 9.4236 0.4357 4.9393 43 1 9.3090 -1.1583 1.9408 44 1 9.9411 0.2343 1.0301 45 1 10.7492 -0.2915 2.5262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989737328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:59 Heat of formation + Delta-G solvation = -14.083608 kcal Electronic energy + Delta-G solvation = -27597.389234 eV Core-core repulsion = 23742.621609 eV Total energy + Delta-G solvation = -3854.767626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.42662 -39.61902 -38.02661 -37.27238 -34.27913 -32.66432 -31.77438 -31.41870 -28.91405 -28.62276 -27.94215 -26.25753 -25.48909 -24.02920 -22.89175 -22.56489 -20.60010 -20.21837 -18.28005 -18.13616 -17.33744 -16.83656 -16.49785 -16.35867 -15.85441 -15.67392 -15.10992 -14.90533 -14.35412 -13.98671 -13.81694 -13.74607 -13.42661 -13.25236 -12.98901 -12.78274 -12.57152 -12.55130 -12.38763 -12.19401 -11.97227 -11.71145 -11.64604 -11.37208 -11.27115 -11.09697 -10.90066 -10.75637 -10.38865 -10.12470 -10.07032 -9.83673 -9.76705 -9.43284 -9.41109 -9.07905 -8.89290 -8.35094 -7.18911 -5.92249 -3.23990 0.19977 1.22850 1.65650 2.36876 3.04857 3.22845 3.33933 3.40057 3.42340 3.51543 4.11239 4.43906 4.59669 4.67856 4.97379 4.98650 5.03492 5.05183 5.12104 5.15345 5.16778 5.19638 5.41203 5.44893 5.49304 5.55121 5.69965 5.76947 5.77643 5.80649 5.87062 5.98591 6.03002 6.09410 6.29970 6.33797 6.40631 6.41144 6.60575 6.74625 6.77171 7.55465 7.58030 7.68989 8.21663 8.24967 9.36902 9.89095 10.24121 11.29469 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007988 B = 0.004658 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3504.486231 B = 6010.243829 C = 9097.177007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.019 3.981 5 N -0.466 5.466 6 C 0.139 3.861 7 C -0.085 4.085 8 C -0.296 4.296 9 C 0.610 3.390 10 O -0.532 6.532 11 N -0.604 5.604 12 C 0.058 3.942 13 C 0.178 3.822 14 H 0.072 0.928 15 N -0.711 5.711 16 C -0.253 4.253 17 H 0.074 0.926 18 C -0.005 4.005 19 N -0.927 5.927 20 Si 0.906 3.094 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C -0.138 4.138 25 C 0.140 3.860 26 H 0.076 0.924 27 C -0.163 4.163 28 S 0.244 5.756 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.388 0.612 40 H 0.257 0.743 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 6.038 -14.328 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.060 3.940 4 C -0.255 4.255 5 N -0.183 5.183 6 C -0.001 4.001 7 C -0.144 4.144 8 C -0.420 4.420 9 C 0.398 3.602 10 O -0.413 6.413 11 N -0.337 5.337 12 C -0.070 4.070 13 C 0.065 3.935 14 H 0.090 0.910 15 N -0.350 5.350 16 C -0.383 4.383 17 H 0.092 0.908 18 C -0.202 4.202 19 N -0.574 5.574 20 Si 0.737 3.263 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.177 4.177 25 C 0.037 3.963 26 H 0.094 0.906 27 C -0.220 4.220 28 S 0.504 5.496 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.223 0.777 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.619 5.962 -14.036 15.335 hybrid contribution -0.686 0.154 0.035 0.704 sum -2.305 6.116 -14.001 15.451 Atomic orbital electron populations 1.22811 0.79984 1.03384 1.00292 1.87982 1.20329 1.26167 1.95506 1.20797 0.84635 0.86172 1.02439 1.27153 1.00818 1.03447 0.94065 1.66042 1.04413 1.15820 1.31976 1.20567 0.89873 0.96071 0.93573 1.20608 0.97082 1.03297 0.93386 1.25650 0.98577 1.20306 0.97511 1.16274 0.85873 0.76909 0.81137 1.90690 1.44168 1.52087 1.54333 1.48501 1.09655 1.71208 1.04343 1.23613 0.92050 1.01568 0.89743 1.21122 0.89245 0.95928 0.87178 0.90984 1.42413 1.46611 1.06935 1.39030 1.19295 1.14734 0.92555 1.11761 0.90797 1.24771 1.00227 0.95471 0.99729 1.69667 1.44572 1.03940 1.39177 0.86143 0.80987 0.78427 0.80750 1.20383 1.21699 1.21704 1.23214 0.99048 1.01292 0.94119 1.21901 0.82686 0.99203 0.92527 0.90595 1.22156 0.98629 0.99403 1.01823 1.84860 0.94935 1.62343 1.07505 0.93736 0.89091 0.93499 0.90623 0.90205 0.90366 0.91084 0.88231 0.90220 0.91741 0.77748 0.93280 0.90354 0.89806 0.92701 0.89827 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.86 10.69 -35.23 -0.38 -5.23 16 3 C 0.14 1.58 6.51 36.01 0.23 1.81 16 4 C 0.02 0.27 7.02 -13.29 -0.09 0.18 16 5 N -0.47 -7.19 10.50 -7.70 -0.08 -7.27 16 6 C 0.14 2.14 6.79 -83.89 -0.57 1.57 16 7 C -0.08 -1.11 9.70 36.01 0.35 -0.76 16 8 C -0.30 -4.72 6.40 -37.09 -0.24 -4.96 16 9 C 0.61 10.16 7.59 -12.85 -0.10 10.06 16 10 O -0.53 -9.26 11.95 5.20 0.06 -9.20 16 11 N -0.60 -9.63 3.25 -164.43 -0.53 -10.17 16 12 C 0.06 0.97 4.95 -2.97 -0.01 0.96 16 13 C 0.18 3.18 3.61 -66.10 -0.24 2.95 16 14 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 15 N -0.71 -16.17 5.15 -51.65 -0.27 -16.44 16 16 C -0.25 -6.41 9.96 -15.06 -0.15 -6.56 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 19 N -0.93 -26.39 13.06 55.49 0.72 -25.67 16 20 Si 0.91 21.01 29.55 -169.99 -5.02 15.99 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.14 -2.08 6.13 -24.57 -0.15 -2.23 16 25 C 0.14 2.00 3.76 -66.41 -0.25 1.75 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 27 C -0.16 -2.21 8.66 37.16 0.32 -1.89 16 28 S 0.24 3.59 18.66 -107.50 -2.01 1.58 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.37 6.01 -51.93 -0.31 1.05 16 37 H 0.08 1.48 6.76 -51.93 -0.35 1.13 16 38 H 0.06 1.04 7.03 -51.93 -0.37 0.67 16 39 H 0.39 9.53 7.76 -40.82 -0.32 9.21 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.24 5.98 -51.93 -0.31 0.93 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -30.52 376.96 -8.38 -38.91 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.68 Total: 7.80 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 0.12 Total: 4.02 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.16 Total: -59.54 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.31 Total: -14.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -2.01 Total: 1.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.52 -8.38 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989737328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.822 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds