Wall clock time and date at job start Tue Mar 31 2020 22:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99833 * 2 1 4 4 C 1.50699 * 109.47393 * 180.02562 * 3 2 1 5 5 N 1.29424 * 124.80554 * 90.02031 * 4 3 2 6 6 C 1.30942 * 117.36621 * 180.02562 * 5 4 3 7 7 C 1.50700 * 122.90820 * 179.97438 * 6 5 4 8 8 C 1.35667 * 114.18959 * 0.02562 * 6 5 4 9 9 C 1.46682 * 126.13180 * 179.97438 * 8 6 5 10 10 O 1.21682 * 119.99699 * 0.02562 * 9 8 6 11 11 N 1.34772 * 120.00133 * 179.97438 * 9 8 6 12 12 C 1.47189 * 125.73400 * 0.05799 * 11 9 8 13 13 C 1.54328 * 107.29071 * 179.03874 * 12 11 9 14 14 H 1.09006 * 110.87026 * 96.15366 * 13 12 11 15 15 N 1.46496 * 110.71897 * 219.35001 * 13 12 11 16 16 C 1.36940 * 120.00378 * 268.52220 * 15 13 12 17 17 H 1.08002 * 119.99797 * 0.02562 * 16 15 13 18 18 C 1.38811 * 119.99931 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00312 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99741 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47079 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47268 * 120.00161 * 20 18 16 23 23 H 1.48502 * 109.46691 * 239.99884 * 20 18 16 24 24 C 1.55157 * 102.94570 * 337.71639 * 13 12 11 25 25 C 1.47419 * 125.65172 * 180.02562 * 11 9 8 26 26 H 1.08999 * 110.36809 * 85.14469 * 25 11 9 27 27 C 1.53006 * 110.36530 * 322.93733 * 25 11 9 28 28 S 1.70960 * 124.80113 * 270.34075 * 4 3 2 29 29 H 1.09001 * 109.47276 * 60.00263 * 1 2 3 30 30 H 1.08995 * 109.46893 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47138 * 299.99654 * 1 2 3 32 32 H 1.09003 * 109.47129 * 59.99875 * 3 2 1 33 33 H 1.09005 * 109.47160 * 300.00400 * 3 2 1 34 34 H 1.09000 * 109.46823 * 270.03902 * 7 6 5 35 35 H 1.08999 * 109.46656 * 30.03322 * 7 6 5 36 36 H 1.08996 * 109.47232 * 150.03564 * 7 6 5 37 37 H 1.08996 * 109.94629 * 59.57865 * 12 11 9 38 38 H 1.08999 * 109.92472 * 298.49187 * 12 11 9 39 39 H 0.97006 * 119.99932 * 88.52990 * 15 13 12 40 40 H 0.97000 * 120.00275 * 180.02562 * 19 18 16 41 41 H 1.09000 * 111.00357 * 277.42671 * 24 13 12 42 42 H 1.09003 * 111.00200 * 153.57019 * 24 13 12 43 43 H 1.09001 * 109.47002 * 302.93281 * 27 25 11 44 44 H 1.08993 * 109.46955 * 62.93718 * 27 25 11 45 45 H 1.09000 * 109.47050 * 182.93547 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2486 1.1289 -1.0636 6 6 5.5430 1.0259 -0.8946 7 6 6.5151 0.9489 -2.0436 8 6 5.9331 0.9933 0.4043 9 6 7.3126 0.8826 0.8905 10 8 8.2330 0.8104 0.0979 11 7 7.5607 0.8619 2.2150 12 6 6.5483 0.9410 3.2805 13 6 7.2940 0.8561 4.6290 14 1 7.4786 1.8512 5.0340 15 7 6.5429 0.0403 5.5862 16 6 5.6423 0.6316 6.4315 17 1 5.4854 1.6994 6.3922 18 6 4.9310 -0.1415 7.3388 19 7 5.1225 -1.4428 7.3871 20 14 3.7019 0.6651 8.4914 21 1 3.6733 2.1282 8.2392 22 1 2.3516 0.0947 8.2531 23 1 4.1042 0.4136 9.8986 24 6 8.6283 0.1633 4.2454 25 6 8.8924 0.7554 2.8382 26 1 9.3524 1.7402 2.9210 27 6 9.7873 -0.1824 2.0254 28 16 4.4851 1.1010 1.4027 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 6.6674 -0.0941 -2.3213 35 1 6.1140 1.4970 -2.8961 36 1 7.4668 1.3879 -1.7444 37 1 5.8486 0.1101 3.1910 38 1 6.0110 1.8869 3.2129 39 1 6.6835 -0.9189 5.6214 40 1 4.6251 -1.9831 8.0209 41 1 8.5070 -0.9189 4.1978 42 1 9.4236 0.4357 4.9393 43 1 9.3090 -1.1583 1.9408 44 1 9.9411 0.2343 1.0301 45 1 10.7492 -0.2915 2.5262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989737328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:58 Heat of formation + Delta-G solvation = -34.352025 kcal Electronic energy + Delta-G solvation = -27598.268139 eV Core-core repulsion = 23742.621609 eV Total energy + Delta-G solvation = -3855.646530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64780 -40.82651 -38.96125 -38.56108 -35.98882 -33.80659 -33.32604 -32.77811 -30.19131 -29.81991 -29.15877 -27.03159 -26.73405 -25.83884 -24.04939 -23.74941 -22.04592 -21.44445 -19.52607 -19.37886 -19.06169 -17.78393 -17.67954 -17.55046 -17.02107 -16.65521 -16.46043 -16.21143 -15.71310 -15.45523 -15.15964 -15.03800 -14.87019 -14.47134 -14.29828 -13.95285 -13.73301 -13.48134 -13.34981 -13.34105 -13.26078 -12.98352 -12.90883 -12.82490 -12.48193 -12.39912 -12.34616 -12.15030 -12.05853 -11.75508 -11.55278 -11.18773 -10.90179 -10.74701 -10.63313 -10.60055 -10.08736 -9.60079 -9.07759 -7.93315 -5.23919 -0.95976 0.08246 0.50053 1.20067 1.51225 1.52590 1.61525 1.79753 1.98584 2.57170 2.58991 3.16842 3.31136 3.37605 3.73299 3.77772 3.81839 3.83738 3.98376 4.14886 4.15983 4.24850 4.26713 4.45549 4.48828 4.49512 4.55403 4.65058 4.67393 4.69811 4.72015 4.82470 4.84547 4.85189 5.08187 5.11096 5.20637 5.28254 5.31182 5.50694 5.56726 6.01098 6.26319 6.31759 6.48973 6.94282 7.35077 8.04692 8.28941 9.29697 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007988 B = 0.004658 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3504.486231 B = 6010.243829 C = 9097.177007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.135 3.865 4 C 0.028 3.972 5 N -0.481 5.481 6 C 0.136 3.864 7 C -0.081 4.081 8 C -0.319 4.319 9 C 0.608 3.392 10 O -0.543 6.543 11 N -0.605 5.605 12 C 0.071 3.929 13 C 0.172 3.828 14 H 0.081 0.919 15 N -0.722 5.722 16 C -0.242 4.242 17 H 0.084 0.916 18 C -0.066 4.066 19 N -0.967 5.967 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.296 1.296 23 H -0.297 1.297 24 C -0.126 4.126 25 C 0.139 3.861 26 H 0.095 0.905 27 C -0.154 4.154 28 S 0.235 5.765 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.376 0.624 40 H 0.250 0.750 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.039 0.961 44 H 0.072 0.928 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 7.616 -14.973 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.056 3.944 4 C -0.246 4.246 5 N -0.198 5.198 6 C -0.004 4.004 7 C -0.139 4.139 8 C -0.443 4.443 9 C 0.396 3.604 10 O -0.424 6.424 11 N -0.338 5.338 12 C -0.056 4.056 13 C 0.061 3.939 14 H 0.099 0.901 15 N -0.361 5.361 16 C -0.373 4.373 17 H 0.102 0.898 18 C -0.259 4.259 19 N -0.617 5.617 20 Si 0.795 3.205 21 H -0.186 1.186 22 H -0.224 1.224 23 H -0.225 1.225 24 C -0.165 4.165 25 C 0.037 3.963 26 H 0.113 0.887 27 C -0.212 4.212 28 S 0.495 5.505 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.058 0.942 44 H 0.091 0.909 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.870 7.590 -14.710 16.658 hybrid contribution -0.611 -0.314 0.120 0.697 sum -2.481 7.277 -14.590 16.492 Atomic orbital electron populations 1.23027 0.77918 1.04309 1.01763 1.87925 1.22643 1.26910 1.95816 1.21035 0.82656 0.86238 1.04454 1.27721 1.02187 1.01431 0.93269 1.66128 1.04469 1.16823 1.32359 1.20951 0.90344 0.95084 0.94032 1.20620 0.96317 1.03748 0.93255 1.25657 0.98629 1.22019 0.98033 1.16379 0.86128 0.76706 0.81164 1.90681 1.44596 1.52676 1.54488 1.48520 1.10052 1.71176 1.04074 1.23249 0.91783 1.01203 0.89410 1.21327 0.90080 0.95941 0.86550 0.90087 1.42542 1.46920 1.06742 1.39864 1.19686 1.13824 0.92959 1.10869 0.89819 1.25488 1.02604 0.95942 1.01892 1.69813 1.46184 1.05304 1.40375 0.85196 0.78487 0.78424 0.78401 1.18571 1.22367 1.22465 1.23129 0.98015 1.00332 0.95032 1.22059 0.82166 1.00287 0.91784 0.88709 1.22073 0.99518 0.98190 1.01388 1.84802 0.94944 1.62694 1.08050 0.91971 0.88551 0.92282 0.88402 0.88323 0.89918 0.89369 0.88909 0.92155 0.90982 0.79163 0.94058 0.91524 0.87792 0.94158 0.90900 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -9.96 10.69 -148.98 -1.59 -11.55 16 3 C 0.14 2.82 6.51 71.24 0.46 3.28 16 4 C 0.03 0.76 7.02 88.46 0.62 1.38 16 5 N -0.48 -14.36 10.50 -178.28 -1.87 -16.23 16 6 C 0.14 4.10 6.79 42.10 0.29 4.38 16 7 C -0.08 -2.04 9.70 71.24 0.69 -1.35 16 8 C -0.32 -10.08 6.40 23.88 0.15 -9.93 16 9 C 0.61 19.96 7.59 86.45 0.66 20.61 16 10 O -0.54 -18.61 11.95 -4.29 -0.05 -18.66 16 11 N -0.61 -18.81 3.25 -792.36 -2.57 -21.38 16 12 C 0.07 2.34 4.95 86.70 0.43 2.77 16 13 C 0.17 5.96 3.61 46.18 0.17 6.13 16 14 H 0.08 2.69 8.09 -2.38 -0.02 2.67 16 15 N -0.72 -32.76 5.15 -317.32 -1.63 -34.39 16 16 C -0.24 -12.14 9.96 84.03 0.84 -11.30 16 17 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.07 -3.55 5.50 84.86 0.47 -3.09 16 19 N -0.97 -56.07 13.06 21.65 0.28 -55.79 16 20 Si 0.97 43.14 29.55 68.60 2.03 45.17 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 22 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 24 C -0.13 -3.63 6.13 31.99 0.20 -3.43 16 25 C 0.14 3.74 3.76 45.48 0.17 3.91 16 26 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 27 C -0.15 -3.96 8.66 71.98 0.62 -3.33 16 28 S 0.24 6.83 18.66 -56.49 -1.05 5.78 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 2.49 6.01 -2.39 -0.01 2.47 16 37 H 0.06 2.26 6.76 -2.39 -0.02 2.24 16 38 H 0.07 2.26 7.03 -2.39 -0.02 2.24 16 39 H 0.38 18.75 7.76 -92.70 -0.72 18.03 16 40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 41 H 0.07 2.09 7.93 -2.39 -0.02 2.08 16 42 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 2.07 5.98 -2.39 -0.01 2.05 16 45 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -65.25 376.96 0.84 -64.41 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.29 Total: 30.97 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 7.01 Total: 11.67 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -5.80 Total: -127.80 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.64 Total: -30.21 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 6.83 SS G_CDS: -1.05 Total: 5.78 kcal Total: -65.25 0.84 -64.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989737328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.063 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds