Wall clock time and date at job start Tue Mar 31 2020 22:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99939 * 2 1 4 4 C 1.50693 * 109.47411 * 180.02562 * 3 2 1 5 5 N 1.29427 * 124.81011 * 89.96974 * 4 3 2 6 6 C 1.30943 * 117.36754 * 180.02562 * 5 4 3 7 7 C 1.50701 * 122.90288 * 180.02562 * 6 5 4 8 8 C 1.35660 * 114.18980 * 0.02562 * 6 5 4 9 9 C 1.46686 * 126.12583 * 180.02562 * 8 6 5 10 10 O 1.21680 * 120.00187 * 6.63653 * 9 8 6 11 11 N 1.34780 * 119.99605 * 186.63658 * 9 8 6 12 12 C 1.47420 * 125.64924 * 356.43563 * 11 9 8 13 13 C 1.54903 * 104.93037 * 155.83470 * 12 11 9 14 14 H 1.09001 * 111.00922 * 155.13450 * 13 12 11 15 15 N 1.46505 * 111.00558 * 278.99213 * 13 12 11 16 16 C 1.36938 * 119.99907 * 273.54376 * 15 13 12 17 17 H 1.08004 * 119.99804 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00009 * 179.97438 * 16 15 13 19 19 N 1.31611 * 120.00073 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99851 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47118 * 60.00151 * 20 18 16 22 22 H 1.48502 * 109.47240 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46958 * 299.99957 * 20 18 16 24 24 C 1.55450 * 101.45145 * 37.00391 * 13 12 11 25 25 C 1.47022 * 125.64794 * 176.45703 * 11 9 8 26 26 H 1.09001 * 109.88234 * 300.45793 * 25 11 9 27 27 C 1.52996 * 109.88258 * 61.62032 * 25 11 9 28 28 S 1.70955 * 124.80236 * 270.33146 * 4 3 2 29 29 H 1.09002 * 109.46492 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47100 * 299.99979 * 1 2 3 31 31 H 1.09004 * 109.46929 * 60.00145 * 1 2 3 32 32 H 1.09001 * 109.47193 * 59.99572 * 3 2 1 33 33 H 1.09003 * 109.47027 * 300.00257 * 3 2 1 34 34 H 1.08997 * 109.46749 * 270.00254 * 7 6 5 35 35 H 1.09005 * 109.47165 * 29.99888 * 7 6 5 36 36 H 1.08997 * 109.47117 * 149.99810 * 7 6 5 37 37 H 1.08999 * 110.36944 * 274.72573 * 12 11 9 38 38 H 1.09001 * 110.36904 * 36.94292 * 12 11 9 39 39 H 0.96997 * 120.00005 * 93.54198 * 15 13 12 40 40 H 0.97005 * 120.00222 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.70943 * 206.14599 * 24 13 12 42 42 H 1.09000 * 110.86043 * 82.96251 * 24 13 12 43 43 H 1.09003 * 109.46843 * 58.54742 * 27 25 11 44 44 H 1.08997 * 109.47430 * 178.54677 * 27 25 11 45 45 H 1.08999 * 109.47483 * 298.55111 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2486 1.1279 -1.0636 6 6 5.5430 1.0250 -0.8945 7 6 6.5151 0.9481 -2.0435 8 6 5.9331 0.9936 0.4044 9 6 7.3128 0.8843 0.8905 10 8 8.2405 0.9335 0.1046 11 7 7.5528 0.7294 2.2077 12 6 6.5333 0.7282 3.2725 13 6 7.1719 -0.0711 4.4356 14 1 6.7355 0.2153 5.3925 15 7 7.0449 -1.5136 4.2135 16 6 5.9141 -2.1716 4.6180 17 1 5.1162 -1.6272 5.1011 18 6 5.7934 -3.5383 4.4072 19 7 6.7656 -4.2016 3.8181 20 14 4.2512 -4.4360 4.9596 21 1 3.0692 -3.8606 4.2687 22 1 4.3690 -5.8770 4.6209 23 1 4.0890 -4.2838 6.4279 24 6 8.6569 0.3788 4.3404 25 6 8.8748 0.5342 2.8206 26 1 9.3404 -0.3658 2.4189 27 6 9.7614 1.7500 2.5436 28 16 4.4851 1.1012 1.4027 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 6.6680 -0.0949 -2.3208 35 1 6.1137 1.4957 -2.8963 36 1 7.4665 1.3879 -1.7445 37 1 6.3137 1.7479 3.5887 38 1 5.6247 0.2348 2.9272 39 1 7.7616 -2.0026 3.7800 40 1 6.6811 -5.1566 3.6704 41 1 9.3181 -0.3855 4.7487 42 1 8.8078 1.3300 4.8509 43 1 9.2851 2.6454 2.9429 44 1 10.7305 1.6096 3.0224 45 1 9.9002 1.8611 1.4682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989737333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:05 Heat of formation + Delta-G solvation = -13.455751 kcal Electronic energy + Delta-G solvation = -28042.931755 eV Core-core repulsion = 24188.191355 eV Total energy + Delta-G solvation = -3854.740400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.29505 -39.52432 -37.96845 -37.22680 -34.05213 -32.52495 -31.69107 -31.33213 -28.82231 -28.57522 -27.88534 -26.19686 -25.63147 -23.84193 -22.92083 -22.58801 -20.68986 -19.81674 -18.24262 -18.06467 -17.31089 -16.76366 -16.50977 -16.22830 -15.73216 -15.53096 -15.01279 -14.63236 -14.42911 -13.90492 -13.82689 -13.70586 -13.42270 -13.09531 -12.94018 -12.78883 -12.51611 -12.39918 -12.30433 -12.24939 -11.82266 -11.79404 -11.57017 -11.25616 -11.20704 -10.99063 -10.84147 -10.73539 -10.39614 -10.09195 -10.01407 -9.77792 -9.72154 -9.42426 -9.23987 -9.05846 -8.72777 -8.24754 -7.10126 -5.86250 -3.17493 0.32265 1.32742 1.74232 2.50270 3.16503 3.38847 3.40319 3.43653 3.45006 3.61909 4.19858 4.49758 4.68026 4.73874 5.01867 5.03921 5.10155 5.11444 5.15140 5.20083 5.24228 5.29082 5.41812 5.49926 5.53567 5.60697 5.70472 5.80094 5.83718 5.89365 5.91734 6.00063 6.06176 6.14143 6.32696 6.36358 6.46278 6.48869 6.61894 6.70228 6.84683 7.59649 7.69511 7.81864 8.30432 8.36060 9.42645 9.95916 10.30411 11.35424 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007441 B = 0.005659 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3761.913381 B = 4946.256373 C = 7673.994361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.141 3.859 4 C 0.013 3.987 5 N -0.465 5.465 6 C 0.138 3.862 7 C -0.088 4.088 8 C -0.286 4.286 9 C 0.612 3.388 10 O -0.534 6.534 11 N -0.592 5.592 12 C 0.057 3.943 13 C 0.174 3.826 14 H 0.075 0.925 15 N -0.710 5.710 16 C -0.252 4.252 17 H 0.072 0.928 18 C -0.004 4.004 19 N -0.926 5.926 20 Si 0.905 3.095 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 C -0.137 4.137 25 C 0.141 3.859 26 H 0.078 0.922 27 C -0.160 4.160 28 S 0.236 5.764 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 15.218 -4.022 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C 0.061 3.939 4 C -0.260 4.260 5 N -0.181 5.181 6 C -0.001 4.001 7 C -0.147 4.147 8 C -0.410 4.410 9 C 0.400 3.600 10 O -0.415 6.415 11 N -0.324 5.324 12 C -0.071 4.071 13 C 0.061 3.939 14 H 0.093 0.907 15 N -0.350 5.350 16 C -0.383 4.383 17 H 0.090 0.910 18 C -0.202 4.202 19 N -0.573 5.573 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.176 4.176 25 C 0.039 3.961 26 H 0.096 0.904 27 C -0.218 4.218 28 S 0.496 5.504 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.221 0.779 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.474 15.007 -3.822 16.425 hybrid contribution -0.559 -0.734 -0.638 1.122 sum -6.032 14.273 -4.460 16.125 Atomic orbital electron populations 1.22806 0.80157 1.03386 1.00104 1.88030 1.20173 1.26125 1.95449 1.20770 0.84800 0.86154 1.02150 1.27231 1.00777 1.03607 0.94410 1.66025 1.04408 1.15691 1.32020 1.20540 0.89856 0.96140 0.93594 1.20643 0.97242 1.03401 0.93368 1.25547 0.98283 1.19824 0.97373 1.16230 0.85937 0.76836 0.81020 1.90711 1.43924 1.52467 1.54352 1.48222 1.09283 1.70001 1.04908 1.23712 0.92274 1.00144 0.91008 1.21341 0.92026 0.86105 0.94423 0.90695 1.42343 1.20912 1.00893 1.70821 1.19142 0.95523 0.90790 1.32816 0.90957 1.24760 0.97964 0.96624 1.00815 1.69646 1.32363 1.08227 1.47057 0.86311 0.82832 0.78991 0.78327 1.21015 1.21619 1.21056 1.23106 0.98815 1.02011 0.93651 1.21511 0.82894 0.98394 0.93329 0.90437 1.22149 0.99133 0.97393 1.03149 1.84431 0.95312 1.62580 1.08111 0.89101 0.93672 0.93779 0.90891 0.90329 0.90353 0.91105 0.88026 0.91900 0.89865 0.77916 0.93237 0.89487 0.90463 0.92838 0.91842 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.27 10.69 -35.23 -0.38 -5.64 16 3 C 0.14 1.68 6.51 36.00 0.23 1.92 16 4 C 0.01 0.20 7.02 -13.29 -0.09 0.11 16 5 N -0.46 -7.85 10.50 -7.71 -0.08 -7.93 16 6 C 0.14 2.38 6.79 -83.89 -0.57 1.81 16 7 C -0.09 -1.32 9.78 36.01 0.35 -0.97 16 8 C -0.29 -5.07 6.38 -37.09 -0.24 -5.30 16 9 C 0.61 11.45 7.61 -12.85 -0.10 11.35 16 10 O -0.53 -10.59 13.17 5.21 0.07 -10.52 16 11 N -0.59 -10.33 3.07 -164.56 -0.50 -10.83 16 12 C 0.06 0.94 5.34 -2.54 -0.01 0.93 16 13 C 0.17 3.08 3.71 -65.62 -0.24 2.84 16 14 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 15 N -0.71 -16.56 5.27 -51.20 -0.27 -16.83 16 16 C -0.25 -6.56 9.98 -15.06 -0.15 -6.71 16 17 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 18 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 19 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 20 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.14 -2.00 6.06 -24.74 -0.15 -2.15 16 25 C 0.14 2.25 3.47 -66.96 -0.23 2.01 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 C -0.16 -2.15 9.10 37.16 0.34 -1.81 16 28 S 0.24 3.64 18.74 -107.50 -2.01 1.62 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.59 5.88 -51.93 -0.31 1.28 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.55 4.94 -29.07 -0.14 1.40 16 39 H 0.39 9.88 7.82 -40.82 -0.32 9.56 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.08 0.91 7.85 -51.93 -0.41 0.51 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.05 6.77 -51.93 -0.35 0.70 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -32.62 378.86 -8.18 -40.81 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.57 Total: 8.28 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 0.15 Total: 5.21 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.13 Total: -62.26 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.31 Total: -16.16 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -2.01 Total: 1.62 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.62 -8.18 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989737333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.351 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds