Wall clock time and date at job start Tue Mar 31 2020 22:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99939 * 2 1 4 4 C 1.50693 * 109.47411 * 180.02562 * 3 2 1 5 5 N 1.29427 * 124.81011 * 89.96974 * 4 3 2 6 6 C 1.30943 * 117.36754 * 180.02562 * 5 4 3 7 7 C 1.50701 * 122.90288 * 180.02562 * 6 5 4 8 8 C 1.35660 * 114.18980 * 0.02562 * 6 5 4 9 9 C 1.46686 * 126.12583 * 180.02562 * 8 6 5 10 10 O 1.21680 * 120.00187 * 6.63653 * 9 8 6 11 11 N 1.34780 * 119.99605 * 186.63658 * 9 8 6 12 12 C 1.47420 * 125.64924 * 356.43563 * 11 9 8 13 13 C 1.54903 * 104.93037 * 155.83470 * 12 11 9 14 14 H 1.09001 * 111.00922 * 155.13450 * 13 12 11 15 15 N 1.46505 * 111.00558 * 278.99213 * 13 12 11 16 16 C 1.36938 * 119.99907 * 273.54376 * 15 13 12 17 17 H 1.08004 * 119.99804 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00009 * 179.97438 * 16 15 13 19 19 N 1.31611 * 120.00073 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99851 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47118 * 60.00151 * 20 18 16 22 22 H 1.48502 * 109.47240 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46958 * 299.99957 * 20 18 16 24 24 C 1.55450 * 101.45145 * 37.00391 * 13 12 11 25 25 C 1.47022 * 125.64794 * 176.45703 * 11 9 8 26 26 H 1.09001 * 109.88234 * 300.45793 * 25 11 9 27 27 C 1.52996 * 109.88258 * 61.62032 * 25 11 9 28 28 S 1.70955 * 124.80236 * 270.33146 * 4 3 2 29 29 H 1.09002 * 109.46492 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47100 * 299.99979 * 1 2 3 31 31 H 1.09004 * 109.46929 * 60.00145 * 1 2 3 32 32 H 1.09001 * 109.47193 * 59.99572 * 3 2 1 33 33 H 1.09003 * 109.47027 * 300.00257 * 3 2 1 34 34 H 1.08997 * 109.46749 * 270.00254 * 7 6 5 35 35 H 1.09005 * 109.47165 * 29.99888 * 7 6 5 36 36 H 1.08997 * 109.47117 * 149.99810 * 7 6 5 37 37 H 1.08999 * 110.36944 * 274.72573 * 12 11 9 38 38 H 1.09001 * 110.36904 * 36.94292 * 12 11 9 39 39 H 0.96997 * 120.00005 * 93.54198 * 15 13 12 40 40 H 0.97005 * 120.00222 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.70943 * 206.14599 * 24 13 12 42 42 H 1.09000 * 110.86043 * 82.96251 * 24 13 12 43 43 H 1.09003 * 109.46843 * 58.54742 * 27 25 11 44 44 H 1.08997 * 109.47430 * 178.54677 * 27 25 11 45 45 H 1.08999 * 109.47483 * 298.55111 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2486 1.1279 -1.0636 6 6 5.5430 1.0250 -0.8945 7 6 6.5151 0.9481 -2.0435 8 6 5.9331 0.9936 0.4044 9 6 7.3128 0.8843 0.8905 10 8 8.2405 0.9335 0.1046 11 7 7.5528 0.7294 2.2077 12 6 6.5333 0.7282 3.2725 13 6 7.1719 -0.0711 4.4356 14 1 6.7355 0.2153 5.3925 15 7 7.0449 -1.5136 4.2135 16 6 5.9141 -2.1716 4.6180 17 1 5.1162 -1.6272 5.1011 18 6 5.7934 -3.5383 4.4072 19 7 6.7656 -4.2016 3.8181 20 14 4.2512 -4.4360 4.9596 21 1 3.0692 -3.8606 4.2687 22 1 4.3690 -5.8770 4.6209 23 1 4.0890 -4.2838 6.4279 24 6 8.6569 0.3788 4.3404 25 6 8.8748 0.5342 2.8206 26 1 9.3404 -0.3658 2.4189 27 6 9.7614 1.7500 2.5436 28 16 4.4851 1.1012 1.4027 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 6.6680 -0.0949 -2.3208 35 1 6.1137 1.4957 -2.8963 36 1 7.4665 1.3879 -1.7445 37 1 6.3137 1.7479 3.5887 38 1 5.6247 0.2348 2.9272 39 1 7.7616 -2.0026 3.7800 40 1 6.6811 -5.1566 3.6704 41 1 9.3181 -0.3855 4.7487 42 1 8.8078 1.3300 4.8509 43 1 9.2851 2.6454 2.9429 44 1 10.7305 1.6096 3.0224 45 1 9.9002 1.8611 1.4682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989737333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:04 Heat of formation + Delta-G solvation = -36.474470 kcal Electronic energy + Delta-G solvation = -28043.929922 eV Core-core repulsion = 24188.191355 eV Total energy + Delta-G solvation = -3855.738566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60632 -40.80171 -38.96998 -38.57341 -35.82787 -33.75041 -33.25383 -32.75641 -30.20215 -29.81150 -29.17477 -27.03280 -26.84183 -25.73782 -24.21215 -23.75012 -22.09221 -21.12401 -19.58210 -19.31592 -19.18352 -17.78219 -17.65882 -17.60181 -16.81297 -16.58090 -16.53856 -16.06457 -15.76757 -15.43293 -15.24614 -15.08914 -14.85575 -14.48709 -14.24245 -13.95300 -13.65915 -13.47055 -13.42249 -13.28098 -13.25552 -13.06533 -12.85942 -12.71396 -12.49966 -12.37840 -12.29098 -12.27464 -12.08808 -11.66753 -11.52937 -11.20307 -10.94495 -10.79656 -10.70753 -10.46132 -10.03247 -9.59507 -9.00199 -7.93913 -5.22828 -0.92729 0.10873 0.50259 1.23539 1.47574 1.50239 1.55238 1.83050 2.05903 2.56055 2.63088 3.19556 3.34576 3.40636 3.75532 3.79627 3.80743 3.89410 4.01378 4.09795 4.15751 4.29070 4.34694 4.43661 4.48526 4.56124 4.61147 4.63076 4.66688 4.68532 4.73823 4.82219 4.85348 4.89647 5.08036 5.16065 5.20340 5.23947 5.35239 5.45502 5.55412 6.04710 6.26591 6.37030 6.53016 6.96807 7.34039 8.07906 8.29574 9.29234 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007441 B = 0.005659 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3761.913381 B = 4946.256373 C = 7673.994361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.137 3.863 4 C 0.016 3.984 5 N -0.484 5.484 6 C 0.129 3.871 7 C -0.083 4.083 8 C -0.319 4.319 9 C 0.603 3.397 10 O -0.557 6.557 11 N -0.595 5.595 12 C 0.061 3.939 13 C 0.162 3.838 14 H 0.095 0.905 15 N -0.725 5.725 16 C -0.235 4.235 17 H 0.087 0.913 18 C -0.073 4.073 19 N -0.970 5.970 20 Si 0.962 3.038 21 H -0.279 1.279 22 H -0.304 1.304 23 H -0.271 1.271 24 C -0.120 4.120 25 C 0.135 3.865 26 H 0.046 0.954 27 C -0.148 4.148 28 S 0.261 5.739 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.371 0.629 40 H 0.248 0.752 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 17.583 -2.679 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.058 3.942 4 C -0.258 4.258 5 N -0.201 5.201 6 C -0.010 4.010 7 C -0.142 4.142 8 C -0.443 4.443 9 C 0.392 3.608 10 O -0.439 6.439 11 N -0.327 5.327 12 C -0.066 4.066 13 C 0.052 3.948 14 H 0.113 0.887 15 N -0.363 5.363 16 C -0.366 4.366 17 H 0.105 0.895 18 C -0.266 4.266 19 N -0.621 5.621 20 Si 0.792 3.208 21 H -0.206 1.206 22 H -0.231 1.231 23 H -0.196 1.196 24 C -0.159 4.159 25 C 0.033 3.967 26 H 0.064 0.936 27 C -0.206 4.206 28 S 0.521 5.479 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.202 0.798 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.136 0.864 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.145 17.443 -2.432 19.006 hybrid contribution -0.099 -1.375 -1.061 1.740 sum -7.244 16.068 -3.493 17.968 Atomic orbital electron populations 1.23024 0.77920 1.04130 1.01920 1.87961 1.22703 1.27217 1.95824 1.21053 0.82466 0.86068 1.04601 1.27936 1.02466 1.01490 0.93909 1.66107 1.04267 1.16941 1.32767 1.20872 0.90487 0.95622 0.94067 1.20617 0.96672 1.03300 0.93630 1.25600 0.98778 1.21654 0.98290 1.16470 0.86285 0.76751 0.81327 1.90685 1.44716 1.53608 1.54894 1.48341 1.10072 1.69472 1.04782 1.23668 0.91211 1.01771 0.89944 1.21688 0.94580 0.83160 0.95395 0.88727 1.42550 1.19731 1.03327 1.70716 1.19602 0.96091 0.90822 1.30114 0.89516 1.25506 1.00655 0.97917 1.02489 1.69814 1.34517 1.07712 1.50021 0.85372 0.79877 0.77021 0.78540 1.20567 1.23080 1.19624 1.23059 0.96334 1.03736 0.92752 1.21631 0.82677 0.98370 0.94031 0.93573 1.22044 0.99845 0.96681 1.02024 1.84151 0.94017 1.62111 1.07659 0.89005 0.91745 0.92038 0.87696 0.88554 0.90779 0.89091 0.88883 0.88069 0.91700 0.79777 0.94351 0.89967 0.86372 0.91133 0.89568 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.82 10.69 -148.98 -1.59 -12.41 16 3 C 0.14 2.94 6.51 71.23 0.46 3.40 16 4 C 0.02 0.45 7.02 88.46 0.62 1.07 16 5 N -0.48 -16.03 10.50 -178.29 -1.87 -17.90 16 6 C 0.13 4.47 6.79 42.09 0.29 4.76 16 7 C -0.08 -2.55 9.78 71.24 0.70 -1.85 16 8 C -0.32 -11.31 6.38 23.88 0.15 -11.15 16 9 C 0.60 22.80 7.61 86.45 0.66 23.46 16 10 O -0.56 -22.74 13.17 -4.28 -0.06 -22.80 16 11 N -0.60 -20.36 3.07 -792.75 -2.43 -22.79 16 12 C 0.06 1.90 5.34 86.85 0.46 2.36 16 13 C 0.16 5.39 3.71 46.48 0.17 5.56 16 14 H 0.10 2.82 8.13 -2.39 -0.02 2.80 16 15 N -0.73 -33.55 5.27 -315.89 -1.66 -35.22 16 16 C -0.23 -12.06 9.98 84.03 0.84 -11.22 16 17 H 0.09 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 19 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 20 Si 0.96 45.06 29.55 68.60 2.03 47.09 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.12 -3.22 6.06 31.88 0.19 -3.02 16 25 C 0.14 4.19 3.47 45.34 0.16 4.34 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 C -0.15 -3.71 9.10 71.98 0.65 -3.06 16 28 S 0.26 7.69 18.74 -56.49 -1.06 6.63 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 32 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.09 3.00 5.88 -2.39 -0.01 2.99 16 37 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.07 2.32 4.94 -16.92 -0.08 2.24 16 39 H 0.37 19.36 7.82 -92.71 -0.72 18.64 16 40 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.12 2.24 7.85 -2.39 -0.02 2.22 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.05 1.40 6.77 -2.39 -0.02 1.38 16 Total: -1.00 -72.89 378.86 0.93 -71.97 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.22 Total: 31.54 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 7.07 Total: 12.70 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -5.68 Total: -134.71 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.65 Total: -35.21 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 7.69 SS G_CDS: -1.06 Total: 6.63 kcal Total: -72.89 0.93 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989737333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.492 kcal (2) G-P(sol) polarization free energy of solvation -72.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds