Wall clock time and date at job start Tue Mar 31 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32556 * 121.64856 * 2 1 4 4 S 1.77226 * 105.32247 * 180.19616 * 3 2 1 5 5 C 1.72209 * 94.84791 * 359.76770 * 4 3 2 6 6 O 1.21826 * 127.05890 * 180.02562 * 5 4 3 7 7 N 1.34242 * 105.88084 * 359.97438 * 5 4 3 8 8 C 1.46505 * 121.37660 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47201 * 90.02875 * 8 7 5 10 10 C 1.50701 * 109.46946 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00166 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99585 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.62730 * 180.02562 * 12 10 9 14 14 C 1.53191 * 108.89109 * 126.46248 * 13 12 10 15 15 C 1.53044 * 109.31440 * 54.56430 * 14 13 12 16 16 N 1.46498 * 109.46002 * 178.62636 * 15 14 13 17 17 C 1.36937 * 119.99990 * 204.99521 * 16 15 14 18 18 H 1.08000 * 119.99847 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99903 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46827 * 90.00724 * 21 19 17 23 23 H 1.48506 * 109.47092 * 210.00400 * 21 19 17 24 24 H 1.48492 * 109.47272 * 330.00312 * 21 19 17 25 25 C 1.53040 * 109.53662 * 298.63203 * 15 14 13 26 26 C 1.46957 * 120.65462 * 359.81587 * 12 10 9 27 27 H 1.08998 * 109.47289 * 270.23869 * 1 2 3 28 28 H 1.08997 * 109.47147 * 30.23921 * 1 2 3 29 29 H 1.09002 * 109.46976 * 150.24343 * 1 2 3 30 30 H 1.08005 * 127.34129 * 359.94399 * 3 2 1 31 31 H 1.08997 * 109.47073 * 330.02298 * 8 7 5 32 32 H 1.09002 * 109.46762 * 210.02446 * 8 7 5 33 33 H 1.09002 * 109.47153 * 59.99546 * 9 8 7 34 34 H 1.08999 * 109.46626 * 299.99922 * 9 8 7 35 35 H 1.09002 * 109.58861 * 6.60251 * 13 12 10 36 36 H 1.08996 * 109.58519 * 246.32142 * 13 12 10 37 37 H 1.09003 * 109.49294 * 174.51508 * 14 13 12 38 38 H 1.09001 * 109.49969 * 294.57596 * 14 13 12 39 39 H 1.08994 * 109.45986 * 58.65006 * 15 14 13 40 40 H 0.97003 * 120.00330 * 24.99965 * 16 15 14 41 41 H 0.97009 * 119.99843 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.49643 * 181.31582 * 25 15 14 43 43 H 1.08994 * 109.49843 * 301.38341 * 25 15 14 44 44 H 1.09001 * 109.46843 * 113.75468 * 26 12 10 45 45 H 1.08997 * 109.71602 * 353.46961 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1284 0.0000 4 16 3.9033 0.6302 -0.0059 5 6 3.5606 -1.0574 -0.0009 6 8 4.3673 -1.9703 -0.0019 7 7 2.2222 -1.1605 0.0053 8 6 1.5577 -2.4661 0.0103 9 6 1.3322 -2.9181 1.4546 10 6 0.6481 -4.2609 1.4597 11 8 0.3680 -4.8027 0.4115 12 7 0.3476 -4.8595 2.6293 13 6 -0.3187 -6.1688 2.6504 14 6 0.5032 -7.1298 3.5151 15 6 0.7156 -6.5103 4.8984 16 7 1.4734 -7.4408 5.7387 17 6 1.3609 -7.3792 7.1021 18 1 0.7131 -6.6449 7.5578 19 6 2.0785 -8.2612 7.8982 20 7 2.8675 -9.1563 7.3428 21 14 1.9244 -8.1776 9.7580 22 1 0.8195 -9.0642 10.2035 23 1 3.1973 -8.6220 10.3807 24 1 1.6340 -6.7804 10.1684 25 6 1.4943 -5.2003 4.7584 26 6 0.6841 -4.2177 3.9077 27 1 -0.3634 0.0043 1.0276 28 1 -0.3633 0.8878 -0.5175 29 1 -0.3633 -0.8922 -0.5101 30 1 1.8153 2.1367 -0.0008 31 1 2.1839 -3.1945 -0.5048 32 1 0.5976 -2.3871 -0.4997 33 1 0.7060 -2.1896 1.9697 34 1 2.2923 -2.9970 1.9646 35 1 -0.3888 -6.5597 1.6353 36 1 -1.3187 -6.0631 3.0711 37 1 -0.0310 -8.0744 3.6176 38 1 1.4696 -7.3077 3.0434 39 1 -0.2517 -6.3103 5.3591 40 1 2.0550 -8.1005 5.3294 41 1 3.3693 -9.7725 7.8992 42 1 1.6655 -4.7716 5.7458 43 1 2.4518 -5.3960 4.2757 44 1 -0.2331 -3.9506 4.4326 45 1 1.2747 -3.3201 3.7244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996670236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:20 Heat of formation + Delta-G solvation = -27.021797 kcal Electronic energy + Delta-G solvation = -27167.052353 eV Core-core repulsion = 23311.723685 eV Total energy + Delta-G solvation = -3855.328668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42515 -40.09878 -37.89197 -37.51017 -34.56487 -33.81455 -32.21274 -31.64771 -30.79475 -29.39689 -28.43032 -25.66326 -24.65443 -23.53973 -23.06392 -22.36775 -20.74264 -20.24269 -18.93366 -18.41544 -17.80649 -17.11535 -16.66303 -16.64212 -15.91497 -15.64485 -15.25760 -14.86827 -14.66067 -14.14319 -14.08533 -14.07235 -13.83584 -13.77900 -13.58746 -13.34864 -13.08186 -13.04553 -12.58905 -12.34788 -12.02007 -11.75527 -11.63409 -11.58544 -11.46564 -11.02262 -10.92178 -10.86623 -10.55092 -10.35780 -10.27120 -10.03808 -9.87831 -9.79495 -9.71089 -8.95715 -8.61388 -8.29175 -7.02623 -5.81443 -3.11189 0.64167 1.02680 1.46068 1.82289 2.35974 2.50519 3.00731 3.39636 3.44498 3.46747 4.04364 4.35556 4.37470 4.45829 4.53723 4.63321 4.86493 4.93825 4.97707 5.06494 5.10198 5.20247 5.25373 5.26353 5.32401 5.33235 5.47946 5.54607 5.56168 5.65474 5.76414 5.87319 5.92507 6.15848 6.29593 6.32418 6.38547 6.44572 6.53766 6.82125 6.97659 7.01145 7.37263 7.63852 8.05728 8.36567 9.47791 10.04957 10.39425 11.41019 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.002318 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.825807 B =12079.059796 C =12797.853812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.104 3.896 3 C -0.241 4.241 4 S -0.002 6.002 5 C 0.479 3.521 6 O -0.466 6.466 7 N -0.533 5.533 8 C 0.116 3.884 9 C -0.157 4.157 10 C 0.522 3.478 11 O -0.550 6.550 12 N -0.602 5.602 13 C 0.116 3.884 14 C -0.140 4.140 15 C 0.180 3.820 16 N -0.724 5.724 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.153 4.153 26 C 0.106 3.894 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.191 0.809 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 22.580 -16.232 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.007 4.007 3 C -0.379 4.379 4 S 0.241 5.759 5 C 0.161 3.839 6 O -0.345 6.345 7 N -0.254 5.254 8 C -0.009 4.009 9 C -0.197 4.197 10 C 0.309 3.691 11 O -0.429 6.429 12 N -0.335 5.335 13 C -0.006 4.006 14 C -0.179 4.179 15 C 0.069 3.931 16 N -0.364 5.364 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.194 4.194 26 C -0.017 4.017 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.209 0.791 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.861 22.358 -16.584 28.448 hybrid contribution -0.859 -0.873 1.196 1.712 sum -6.720 21.486 -15.388 27.269 Atomic orbital electron populations 1.20834 0.86585 1.04675 1.04195 1.19473 0.95894 0.84901 1.00462 1.24894 0.93218 1.01301 1.18501 1.85232 1.08469 1.01299 1.80943 1.21640 0.83793 0.95738 0.82742 1.91012 1.48527 1.42325 1.52602 1.46165 1.06400 1.07840 1.65012 1.21648 0.99960 0.82316 0.96938 1.21990 1.03219 0.96062 0.98469 1.20171 0.78736 0.86629 0.83580 1.90692 1.54835 1.66257 1.31095 1.48172 1.58719 1.20704 1.05901 1.21637 0.95295 0.82038 1.01677 1.22215 1.00542 0.98577 0.96544 1.20150 0.94356 0.89057 0.89501 1.42438 1.52706 1.38424 1.02862 1.19214 1.21670 1.13860 0.82534 0.91176 1.24764 0.99643 0.98483 0.98006 1.69667 1.31861 1.22222 1.34194 0.86202 0.76966 0.77460 0.85603 1.21696 1.21764 1.20753 1.22687 0.99533 0.97819 0.99346 1.21894 0.99931 0.96148 0.83741 0.89467 0.89075 0.90202 0.79150 0.87749 0.87835 0.88323 0.88017 0.89291 0.91456 0.90437 0.91796 0.93396 0.78229 0.93438 0.90508 0.92127 0.91251 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.35 9.69 36.00 0.35 0.00 16 2 C 0.10 0.67 6.59 -82.51 -0.54 0.13 16 3 C -0.24 -1.44 11.24 28.82 0.32 -1.12 16 4 S 0.00 -0.02 22.97 -107.50 -2.47 -2.49 16 5 C 0.48 5.72 8.27 53.82 0.45 6.16 16 6 O -0.47 -7.30 17.55 5.08 0.09 -7.21 16 7 N -0.53 -4.93 2.60 -117.28 -0.31 -5.23 16 8 C 0.12 1.10 4.56 -4.04 -0.02 1.09 16 9 C -0.16 -1.51 4.37 -27.88 -0.12 -1.63 16 10 C 0.52 6.67 7.70 -10.98 -0.08 6.59 16 11 O -0.55 -8.56 15.39 5.56 0.09 -8.47 16 12 N -0.60 -7.77 2.98 -172.77 -0.51 -8.29 16 13 C 0.12 1.57 6.43 -3.71 -0.02 1.55 16 14 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 15 C 0.18 3.34 2.73 -67.89 -0.19 3.15 16 16 N -0.72 -17.58 5.12 -53.39 -0.27 -17.85 16 17 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.15 -2.48 5.66 -26.63 -0.15 -2.63 16 26 C 0.11 1.27 6.33 -3.71 -0.02 1.25 16 27 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.15 8.10 -51.93 -0.42 -0.27 16 29 H 0.08 0.29 6.18 -51.93 -0.32 -0.03 16 30 H 0.19 0.56 8.06 -52.48 -0.42 0.14 16 31 H 0.10 1.23 7.76 -51.93 -0.40 0.82 16 32 H 0.10 0.81 6.07 -51.93 -0.32 0.49 16 33 H 0.10 0.71 7.95 -51.93 -0.41 0.29 16 34 H 0.10 1.09 7.69 -51.93 -0.40 0.70 16 35 H 0.09 1.25 7.01 -51.93 -0.36 0.88 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.75 5.95 -51.93 -0.31 0.44 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -33.78 378.89 -9.01 -42.80 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.61 Total: 6.24 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.43 Total: 5.02 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.37 Total: -58.57 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.17 Total: -15.69 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.78 -9.01 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996670236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.777 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds