Wall clock time and date at job start Tue Mar 31 2020 22:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32556 * 121.64856 * 2 1 4 4 S 1.77226 * 105.32247 * 180.19616 * 3 2 1 5 5 C 1.72209 * 94.84791 * 359.76770 * 4 3 2 6 6 O 1.21826 * 127.05890 * 180.02562 * 5 4 3 7 7 N 1.34242 * 105.88084 * 359.97438 * 5 4 3 8 8 C 1.46505 * 121.37660 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47201 * 90.02875 * 8 7 5 10 10 C 1.50701 * 109.46946 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00166 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99585 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.62730 * 180.02562 * 12 10 9 14 14 C 1.53191 * 108.89109 * 126.46248 * 13 12 10 15 15 C 1.53044 * 109.31440 * 54.56430 * 14 13 12 16 16 N 1.46498 * 109.46002 * 178.62636 * 15 14 13 17 17 C 1.36937 * 119.99990 * 204.99521 * 16 15 14 18 18 H 1.08000 * 119.99847 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99903 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46827 * 90.00724 * 21 19 17 23 23 H 1.48506 * 109.47092 * 210.00400 * 21 19 17 24 24 H 1.48492 * 109.47272 * 330.00312 * 21 19 17 25 25 C 1.53040 * 109.53662 * 298.63203 * 15 14 13 26 26 C 1.46957 * 120.65462 * 359.81587 * 12 10 9 27 27 H 1.08998 * 109.47289 * 270.23869 * 1 2 3 28 28 H 1.08997 * 109.47147 * 30.23921 * 1 2 3 29 29 H 1.09002 * 109.46976 * 150.24343 * 1 2 3 30 30 H 1.08005 * 127.34129 * 359.94399 * 3 2 1 31 31 H 1.08997 * 109.47073 * 330.02298 * 8 7 5 32 32 H 1.09002 * 109.46762 * 210.02446 * 8 7 5 33 33 H 1.09002 * 109.47153 * 59.99546 * 9 8 7 34 34 H 1.08999 * 109.46626 * 299.99922 * 9 8 7 35 35 H 1.09002 * 109.58861 * 6.60251 * 13 12 10 36 36 H 1.08996 * 109.58519 * 246.32142 * 13 12 10 37 37 H 1.09003 * 109.49294 * 174.51508 * 14 13 12 38 38 H 1.09001 * 109.49969 * 294.57596 * 14 13 12 39 39 H 1.08994 * 109.45986 * 58.65006 * 15 14 13 40 40 H 0.97003 * 120.00330 * 24.99965 * 16 15 14 41 41 H 0.97009 * 119.99843 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.49643 * 181.31582 * 25 15 14 43 43 H 1.08994 * 109.49843 * 301.38341 * 25 15 14 44 44 H 1.09001 * 109.46843 * 113.75468 * 26 12 10 45 45 H 1.08997 * 109.71602 * 353.46961 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1284 0.0000 4 16 3.9033 0.6302 -0.0059 5 6 3.5606 -1.0574 -0.0009 6 8 4.3673 -1.9703 -0.0019 7 7 2.2222 -1.1605 0.0053 8 6 1.5577 -2.4661 0.0103 9 6 1.3322 -2.9181 1.4546 10 6 0.6481 -4.2609 1.4597 11 8 0.3680 -4.8027 0.4115 12 7 0.3476 -4.8595 2.6293 13 6 -0.3187 -6.1688 2.6504 14 6 0.5032 -7.1298 3.5151 15 6 0.7156 -6.5103 4.8984 16 7 1.4734 -7.4408 5.7387 17 6 1.3609 -7.3792 7.1021 18 1 0.7131 -6.6449 7.5578 19 6 2.0785 -8.2612 7.8982 20 7 2.8675 -9.1563 7.3428 21 14 1.9244 -8.1776 9.7580 22 1 0.8195 -9.0642 10.2035 23 1 3.1973 -8.6220 10.3807 24 1 1.6340 -6.7804 10.1684 25 6 1.4943 -5.2003 4.7584 26 6 0.6841 -4.2177 3.9077 27 1 -0.3634 0.0043 1.0276 28 1 -0.3633 0.8878 -0.5175 29 1 -0.3633 -0.8922 -0.5101 30 1 1.8153 2.1367 -0.0008 31 1 2.1839 -3.1945 -0.5048 32 1 0.5976 -2.3871 -0.4997 33 1 0.7060 -2.1896 1.9697 34 1 2.2923 -2.9970 1.9646 35 1 -0.3888 -6.5597 1.6353 36 1 -1.3187 -6.0631 3.0711 37 1 -0.0310 -8.0744 3.6176 38 1 1.4696 -7.3077 3.0434 39 1 -0.2517 -6.3103 5.3591 40 1 2.0550 -8.1005 5.3294 41 1 3.3693 -9.7725 7.8992 42 1 1.6655 -4.7716 5.7458 43 1 2.4518 -5.3960 4.2757 44 1 -0.2331 -3.9506 4.4326 45 1 1.2747 -3.3201 3.7244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996670236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:19 Heat of formation + Delta-G solvation = -49.513005 kcal Electronic energy + Delta-G solvation = -27168.027645 eV Core-core repulsion = 23311.723685 eV Total energy + Delta-G solvation = -3856.303960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.16826 -41.15725 -38.87593 -38.66109 -36.17614 -34.59629 -33.82154 -32.52845 -31.80576 -31.02978 -29.08895 -26.80979 -25.89355 -24.52658 -24.38457 -23.58950 -21.76075 -21.26031 -20.09663 -19.09270 -19.05522 -18.68286 -17.62857 -17.46183 -16.85628 -16.71932 -16.63496 -16.02412 -15.49890 -15.44840 -15.33995 -15.04300 -15.00733 -14.67870 -14.55317 -14.32312 -14.28226 -13.80775 -13.60115 -13.28285 -13.15495 -13.10627 -12.84913 -12.65803 -12.43410 -12.26980 -12.20280 -12.17115 -12.04445 -12.01241 -11.72100 -11.33426 -11.24178 -11.04454 -10.84402 -10.59848 -9.72447 -9.02738 -8.96144 -7.94416 -5.23609 -0.12839 0.38389 0.88303 1.11884 1.47237 1.48685 1.48981 1.57179 1.64673 2.04680 2.55988 3.34535 3.39557 3.59869 3.63073 3.73556 3.81352 3.91663 4.05156 4.14479 4.18073 4.27164 4.35010 4.39360 4.42975 4.56489 4.61156 4.66437 4.76188 4.80609 4.81653 4.82413 4.84777 4.99282 5.04063 5.04907 5.28034 5.33435 5.46568 5.52219 5.59072 5.74423 6.23500 6.26932 6.34195 7.03597 7.32738 8.08731 8.31174 9.29449 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.002318 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.825807 B =12079.059796 C =12797.853812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.092 3.908 3 C -0.221 4.221 4 S -0.007 6.007 5 C 0.458 3.542 6 O -0.525 6.525 7 N -0.529 5.529 8 C 0.120 3.880 9 C -0.146 4.146 10 C 0.521 3.479 11 O -0.580 6.580 12 N -0.605 5.605 13 C 0.124 3.876 14 C -0.130 4.130 15 C 0.174 3.826 16 N -0.740 5.740 17 C -0.234 4.234 18 H 0.082 0.918 19 C -0.081 4.081 20 N -0.974 5.974 21 Si 0.972 3.028 22 H -0.288 1.288 23 H -0.301 1.301 24 H -0.265 1.265 25 C -0.145 4.145 26 C 0.116 3.884 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.229 0.771 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.368 0.632 41 H 0.249 0.751 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.096 0.904 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 26.254 -16.014 32.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.017 4.017 3 C -0.358 4.358 4 S 0.236 5.764 5 C 0.142 3.858 6 O -0.408 6.408 7 N -0.249 5.249 8 C -0.005 4.005 9 C -0.186 4.186 10 C 0.310 3.690 11 O -0.460 6.460 12 N -0.337 5.337 13 C 0.001 3.999 14 C -0.169 4.169 15 C 0.065 3.935 16 N -0.379 5.379 17 C -0.366 4.366 18 H 0.100 0.900 19 C -0.273 4.273 20 N -0.625 5.625 21 Si 0.802 3.198 22 H -0.215 1.215 23 H -0.228 1.228 24 H -0.189 1.189 25 C -0.185 4.185 26 C -0.007 4.007 27 H 0.121 0.879 28 H 0.134 0.866 29 H 0.096 0.904 30 H 0.246 0.754 31 H 0.091 0.909 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.200 0.800 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.114 0.886 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.805 26.131 -16.380 32.073 hybrid contribution -0.019 -1.913 1.033 2.174 sum -8.824 24.218 -15.347 29.999 Atomic orbital electron populations 1.20986 0.83704 1.05803 1.05497 1.20050 0.97455 0.83758 1.00452 1.25441 0.90415 1.02806 1.17169 1.85256 1.11652 0.99232 1.80296 1.22067 0.84424 0.96344 0.82992 1.90967 1.50164 1.44353 1.55365 1.46189 1.05750 1.08725 1.64239 1.21555 1.00109 0.82025 0.96854 1.21939 1.02826 0.95060 0.98803 1.20642 0.78050 0.87410 0.82904 1.90684 1.55987 1.67240 1.32130 1.48236 1.58596 1.20456 1.06414 1.21527 0.95741 0.81843 1.00811 1.22080 1.00035 0.99225 0.95589 1.20428 0.94065 0.89185 0.89777 1.42707 1.53086 1.39330 1.02802 1.19649 1.20247 1.12835 0.83820 0.90019 1.25596 1.00313 0.98926 1.02454 1.69840 1.33634 1.23610 1.35449 0.85151 0.76240 0.78086 0.80373 1.21499 1.22778 1.18942 1.22474 0.98858 0.97538 0.99679 1.21905 1.00771 0.95382 0.82623 0.87936 0.86642 0.90391 0.75399 0.90949 0.85717 0.84621 0.89137 0.89744 0.89093 0.90882 0.93818 0.92684 0.80047 0.94228 0.91440 0.94401 0.88574 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.21 9.69 71.24 0.69 0.48 16 2 C 0.09 0.88 6.59 40.71 0.27 1.15 16 3 C -0.22 -1.84 11.24 66.67 0.75 -1.09 16 4 S -0.01 -0.13 22.97 -56.49 -1.30 -1.43 16 5 C 0.46 11.08 8.27 129.87 1.07 12.16 16 6 O -0.52 -17.58 17.55 -4.75 -0.08 -17.66 16 7 N -0.53 -9.07 2.60 -643.42 -1.68 -10.74 16 8 C 0.12 2.15 4.56 86.38 0.39 2.55 16 9 C -0.15 -2.51 4.37 29.85 0.13 -2.38 16 10 C 0.52 12.45 7.70 87.66 0.67 13.12 16 11 O -0.58 -17.57 15.39 -3.02 -0.05 -17.62 16 12 N -0.60 -14.30 2.98 -818.91 -2.44 -16.74 16 13 C 0.12 3.15 6.43 86.36 0.56 3.71 16 14 C -0.13 -4.20 5.55 30.67 0.17 -4.03 16 15 C 0.17 6.36 2.73 45.02 0.12 6.48 16 16 N -0.74 -36.55 5.12 -322.82 -1.65 -38.20 16 17 C -0.23 -12.57 9.93 84.03 0.83 -11.74 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 20 N -0.97 -60.16 13.06 21.65 0.28 -59.87 16 21 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 25 C -0.14 -4.56 5.66 30.66 0.17 -4.38 16 26 C 0.12 2.42 6.33 86.34 0.55 2.96 16 27 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.12 -0.26 8.10 -2.39 -0.02 -0.28 16 29 H 0.08 0.25 6.18 -2.39 -0.01 0.23 16 30 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 31 H 0.07 1.79 7.76 -2.39 -0.02 1.77 16 32 H 0.12 1.69 6.07 -2.39 -0.01 1.67 16 33 H 0.14 1.33 7.95 -2.39 -0.02 1.31 16 34 H 0.09 1.84 7.69 -2.39 -0.02 1.83 16 35 H 0.08 2.29 7.01 -2.39 -0.02 2.27 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 40 H 0.37 20.18 7.80 -92.71 -0.72 19.45 16 41 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.10 1.65 5.95 -2.39 -0.01 1.64 16 Total: -1.00 -78.02 378.89 2.26 -75.76 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.29 Total: 24.09 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 6.85 Total: 14.84 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -5.49 Total: -125.56 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.13 Total: -35.28 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.30 Total: -1.43 kcal Total: -78.02 2.26 -75.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996670236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.248 kcal (2) G-P(sol) polarization free energy of solvation -78.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds