Wall clock time and date at job start Tue Mar 31 2020 22:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00229 * 2 1 4 4 C 1.50703 * 109.47090 * 179.97438 * 3 2 1 5 5 N 1.29429 * 124.80333 * 89.97859 * 4 3 2 6 6 C 1.30933 * 117.36287 * 180.02562 * 5 4 3 7 7 C 1.50703 * 122.90617 * 179.97438 * 6 5 4 8 8 C 1.35663 * 114.19348 * 359.97438 * 6 5 4 9 9 C 1.46680 * 126.13123 * 180.02562 * 8 6 5 10 10 O 1.21685 * 120.00380 * 319.76377 * 9 8 6 11 11 N 1.34779 * 120.00181 * 139.76977 * 9 8 6 12 12 C 1.46920 * 120.63203 * 174.08600 * 11 9 8 13 13 C 1.53197 * 108.77767 * 126.66470 * 12 11 9 14 14 C 1.53042 * 109.30960 * 54.63348 * 13 12 11 15 15 N 1.46507 * 109.45727 * 178.61661 * 14 13 12 16 16 C 1.36931 * 119.99875 * 275.06526 * 15 14 13 17 17 H 1.08002 * 120.00534 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99763 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99856 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00058 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47290 * 89.99967 * 20 18 16 22 22 H 1.48498 * 109.47155 * 209.99840 * 20 18 16 23 23 H 1.48500 * 109.47602 * 330.00079 * 20 18 16 24 24 C 1.53037 * 109.54060 * 298.63673 * 14 13 12 25 25 C 1.46927 * 120.62998 * 354.36364 * 11 9 8 26 26 S 1.70950 * 124.80116 * 270.32958 * 4 3 2 27 27 H 1.08999 * 109.47455 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47084 * 300.00535 * 1 2 3 29 29 H 1.09000 * 109.47148 * 59.99597 * 1 2 3 30 30 H 1.09003 * 109.46968 * 59.99702 * 3 2 1 31 31 H 1.09003 * 109.47404 * 299.99932 * 3 2 1 32 32 H 1.08994 * 109.47125 * 269.99871 * 7 6 5 33 33 H 1.09005 * 109.46534 * 29.99885 * 7 6 5 34 34 H 1.09002 * 109.47443 * 149.99145 * 7 6 5 35 35 H 1.09001 * 109.58726 * 246.45132 * 12 11 9 36 36 H 1.08998 * 109.58916 * 6.88104 * 12 11 9 37 37 H 1.09000 * 109.49603 * 294.68570 * 13 12 11 38 38 H 1.08997 * 109.50219 * 174.58236 * 13 12 11 39 39 H 1.09002 * 109.45991 * 58.65861 * 14 13 12 40 40 H 0.96999 * 119.99566 * 95.07475 * 15 14 13 41 41 H 0.96996 * 120.00128 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.49838 * 301.41475 * 24 14 13 43 43 H 1.08997 * 109.50209 * 181.32105 * 24 14 13 44 44 H 1.09007 * 109.58483 * 353.12274 * 25 11 9 45 45 H 1.08998 * 109.58753 * 113.40064 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2494 1.1274 -1.0618 6 6 5.5436 1.0244 -0.8917 7 6 6.5166 0.9460 -2.0399 8 6 5.9329 0.9943 0.4075 9 6 7.3121 0.8853 0.8948 10 8 8.0969 0.1399 0.3386 11 7 7.7103 1.6106 1.9587 12 6 9.0465 1.4179 2.5383 13 6 9.7530 2.7753 2.6109 14 6 8.8717 3.7640 3.3778 15 7 9.5587 5.0542 3.4778 16 6 10.4586 5.2743 4.4862 17 1 10.6623 4.4967 5.2076 18 6 11.1091 6.4969 4.5812 19 7 11.9745 6.7083 5.5502 20 14 10.7564 7.8420 3.3341 21 1 9.6325 8.6834 3.8180 22 1 11.9664 8.6850 3.1597 23 1 10.3897 7.2271 2.0330 24 6 7.5454 3.9487 2.6371 25 6 6.8140 2.6046 2.5648 26 16 4.4840 1.1015 1.4048 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 6.6695 -0.0972 -2.3159 33 1 6.1159 1.4928 -2.8935 34 1 7.4679 1.3860 -1.7407 35 1 8.9533 1.0004 3.5408 36 1 9.6231 0.7392 1.9098 37 1 9.9265 3.1495 1.6020 38 1 10.7065 2.6621 3.1266 39 1 8.6781 3.3774 4.3784 40 1 9.3759 5.7524 2.8298 41 1 12.4288 7.5627 5.6168 42 1 7.7398 4.3119 1.6279 43 1 6.9278 4.6707 3.1713 44 1 5.9174 2.7089 1.9537 45 1 6.5366 2.2827 3.5685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997223119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:14 Heat of formation + Delta-G solvation = -13.447745 kcal Electronic energy + Delta-G solvation = -27140.545491 eV Core-core repulsion = 23285.805438 eV Total energy + Delta-G solvation = -3854.740053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73545 -39.72834 -38.28711 -37.47610 -34.72968 -32.88652 -32.10109 -31.10466 -30.03118 -29.21645 -28.33058 -26.53683 -25.11374 -23.37655 -23.10586 -22.56773 -21.37230 -20.00513 -18.79157 -18.50134 -17.62162 -17.15074 -16.93796 -16.44892 -16.11582 -15.63132 -15.32583 -14.91193 -14.60275 -14.33202 -14.17102 -14.00075 -13.61571 -13.33432 -13.24996 -13.01679 -12.85383 -12.84295 -12.55514 -12.46898 -12.37361 -11.91432 -11.85878 -11.64425 -11.11728 -11.06216 -10.97171 -10.60163 -10.46499 -10.33890 -10.20020 -10.02882 -9.95466 -9.64406 -9.53201 -9.07056 -8.97242 -8.67539 -7.33536 -5.81812 -3.18071 -0.06427 0.77710 1.22976 2.13726 2.73335 2.96920 3.20590 3.33751 3.36645 3.42149 3.81026 4.33504 4.37454 4.54585 4.68897 4.76911 4.78269 4.84436 4.84877 4.91510 4.94509 5.18858 5.21093 5.25423 5.42158 5.45492 5.48599 5.50182 5.59630 5.63622 5.72161 5.79403 6.00882 6.03447 6.05791 6.15883 6.38264 6.40512 6.47732 6.75708 6.88864 7.22148 7.34209 7.93191 7.96683 8.37010 9.14822 9.87509 10.06899 11.36293 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.002626 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.245413 B =10658.175747 C =11214.388105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.038 3.962 5 N -0.456 5.456 6 C 0.136 3.864 7 C -0.080 4.080 8 C -0.285 4.285 9 C 0.595 3.405 10 O -0.524 6.524 11 N -0.599 5.599 12 C 0.114 3.886 13 C -0.151 4.151 14 C 0.184 3.816 15 N -0.748 5.748 16 C -0.245 4.245 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.141 4.141 25 C 0.101 3.899 26 S 0.208 5.792 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.361 0.639 41 H 0.260 0.740 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.079 -12.387 -10.948 28.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.237 4.237 5 N -0.172 5.172 6 C -0.002 4.002 7 C -0.139 4.139 8 C -0.409 4.409 9 C 0.381 3.619 10 O -0.401 6.401 11 N -0.332 5.332 12 C -0.008 4.008 13 C -0.191 4.191 14 C 0.074 3.926 15 N -0.390 5.390 16 C -0.375 4.375 17 H 0.109 0.891 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.180 4.180 25 C -0.023 4.023 26 S 0.466 5.534 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.193 0.807 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.922 -12.919 -10.393 28.290 hybrid contribution 0.156 1.319 -1.494 1.999 sum -22.766 -11.600 -11.886 28.180 Atomic orbital electron populations 1.22825 0.79781 1.03437 1.00455 1.87966 1.20478 1.26152 1.95550 1.20826 0.84280 0.86210 1.02805 1.26884 1.00576 1.03918 0.92355 1.65986 1.04395 1.15313 1.31499 1.20545 0.89839 0.96272 0.93523 1.20459 0.95902 1.03802 0.93732 1.25595 0.98709 1.19214 0.97412 1.16712 0.84644 0.80521 0.80025 1.90823 1.53424 1.39211 1.56690 1.48052 1.16915 1.37943 1.30253 1.21791 0.81502 0.99187 0.98289 1.22644 1.00649 0.93968 1.01884 1.20146 0.89032 0.86911 0.96520 1.42785 1.50565 1.11769 1.33846 1.19055 1.14769 0.99551 1.04084 0.89130 1.24679 0.98779 0.97597 0.98027 1.69697 1.30574 1.24419 1.33295 0.86557 0.77468 0.82834 0.81678 1.21096 1.21749 1.20378 1.22227 0.98360 0.95569 1.01829 1.22038 0.92596 0.88853 0.98783 1.83995 0.95349 1.63914 1.10149 0.89032 0.93545 0.93505 0.90515 0.89746 0.89608 0.90397 0.90008 0.91151 0.89179 0.92221 0.89940 0.92346 0.80652 0.93020 0.91748 0.90110 0.90345 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.36 10.69 -35.23 -0.38 -3.74 16 3 C 0.14 1.04 6.51 36.01 0.23 1.28 16 4 C 0.04 0.39 7.01 -13.29 -0.09 0.30 16 5 N -0.46 -5.68 10.50 -7.70 -0.08 -5.76 16 6 C 0.14 1.75 6.79 -83.89 -0.57 1.18 16 7 C -0.08 -0.91 9.62 36.01 0.35 -0.56 16 8 C -0.29 -3.67 5.41 -37.10 -0.20 -3.88 16 9 C 0.60 8.72 7.09 -12.85 -0.09 8.63 16 10 O -0.52 -8.99 15.36 5.20 0.08 -8.91 16 11 N -0.60 -8.16 2.97 -174.31 -0.52 -8.68 16 12 C 0.11 1.62 6.44 -3.71 -0.02 1.59 16 13 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 14 C 0.18 3.24 2.73 -67.89 -0.19 3.06 16 15 N -0.75 -16.81 4.92 -53.38 -0.26 -17.07 16 16 C -0.24 -6.63 10.41 -15.06 -0.16 -6.79 16 17 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -28.73 13.97 55.49 0.78 -27.95 16 20 Si 0.88 21.70 27.74 -169.99 -4.71 16.98 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 24 C -0.14 -1.99 5.55 -26.61 -0.15 -2.14 16 25 C 0.10 1.20 5.66 -3.71 -0.02 1.18 16 26 S 0.21 2.06 20.21 -107.50 -2.17 -0.11 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.99 7.22 -51.93 -0.37 0.61 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 40 H 0.36 8.07 5.66 -40.82 -0.23 7.84 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 0.83 4.55 -38.33 -0.17 0.65 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -33.94 377.18 -8.28 -42.21 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.65 Total: 4.83 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.04 Total: 2.51 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.09 Total: -59.46 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.30 Total: -12.65 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.17 Total: -0.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.94 -8.28 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997223119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.767 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds