Wall clock time and date at job start Tue Mar 31 2020 22:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32565 * 121.64142 * 2 1 4 4 S 1.77232 * 105.31628 * 179.97438 * 3 2 1 5 5 C 1.72202 * 94.84777 * 359.81446 * 4 3 2 6 6 O 1.21831 * 127.05686 * 180.20104 * 5 4 3 7 7 N 1.34245 * 105.88789 * 0.32018 * 5 4 3 8 8 C 1.46499 * 121.38186 * 179.88236 * 7 5 4 9 9 C 1.53000 * 109.46840 * 269.71607 * 8 7 5 10 10 C 1.50703 * 109.46912 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 8 13 13 C 1.46927 * 120.62638 * 359.71455 * 12 10 9 14 14 C 1.53627 * 108.54183 * 126.37295 * 13 12 10 15 15 C 1.53040 * 109.24108 * 54.85576 * 14 13 12 16 16 C 1.53042 * 109.53871 * 298.50936 * 15 14 13 17 17 H 1.08998 * 109.52719 * 301.40163 * 16 15 14 18 18 N 1.46494 * 109.50056 * 181.31705 * 16 15 14 19 19 C 1.36936 * 120.00612 * 155.16703 * 18 16 15 20 20 H 1.08005 * 119.99444 * 359.97438 * 19 18 16 21 21 C 1.38805 * 120.00528 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99933 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46977 * 60.00495 * 23 21 19 25 25 H 1.48499 * 109.46913 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47109 * 299.99904 * 23 21 19 27 27 C 1.46920 * 120.63268 * 180.02562 * 12 10 9 28 28 H 1.08998 * 109.46954 * 270.01895 * 1 2 3 29 29 H 1.09001 * 109.47565 * 30.01809 * 1 2 3 30 30 H 1.08999 * 109.46938 * 150.02040 * 1 2 3 31 31 H 1.07995 * 127.34338 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.46813 * 149.71881 * 8 7 5 33 33 H 1.08992 * 109.47397 * 29.71942 * 8 7 5 34 34 H 1.09002 * 109.47398 * 300.00326 * 9 8 7 35 35 H 1.09001 * 109.47194 * 60.00507 * 9 8 7 36 36 H 1.09005 * 109.58858 * 246.20434 * 13 12 10 37 37 H 1.08995 * 109.58867 * 6.63230 * 13 12 10 38 38 H 1.08999 * 109.63425 * 294.86802 * 14 13 12 39 39 H 1.09002 * 109.43315 * 174.72619 * 14 13 12 40 40 H 1.08995 * 109.46070 * 178.49571 * 15 14 13 41 41 H 1.08999 * 109.46244 * 58.53099 * 15 14 13 42 42 H 0.97009 * 119.99874 * 335.16258 * 18 16 15 43 43 H 0.97000 * 120.00232 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.58920 * 353.36599 * 27 12 10 45 45 H 1.09001 * 109.58884 * 113.65283 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2024 1.1286 0.0000 4 16 3.9033 0.6304 0.0008 5 6 3.5606 -1.0572 0.0066 6 8 4.3674 -1.9701 0.0126 7 7 2.2222 -1.1604 0.0004 8 6 1.5578 -2.4661 0.0004 9 6 1.3270 -2.9208 -1.4422 10 6 0.6430 -4.2636 -1.4422 11 8 0.3676 -4.8039 -0.3919 12 7 0.3381 -4.8646 -2.6094 13 6 0.6608 -4.2202 -3.8898 14 6 1.4760 -5.2056 -4.7410 15 6 0.6996 -6.5175 -4.8760 16 6 0.4926 -7.1347 -3.4910 17 1 1.4607 -7.3097 -3.0217 18 7 -0.2231 -8.4059 -3.6241 19 6 -0.0916 -9.3700 -2.6606 20 1 0.5402 -9.1933 -1.8026 21 6 -0.7694 -10.5747 -2.7870 22 7 -1.5389 -10.7903 -3.8327 23 14 -0.5893 -11.8901 -1.4728 24 1 -1.0526 -11.3530 -0.1682 25 1 -1.4084 -13.0728 -1.8408 26 1 0.8366 -12.2903 -1.3652 27 6 -0.3292 -6.1734 -2.6257 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5135 31 1 1.8151 2.1367 -0.0004 32 1 0.5996 -2.3861 0.5138 33 1 2.1859 -3.1934 0.5146 34 1 0.6989 -2.1934 -1.9564 35 1 2.2852 -3.0008 -1.9556 36 1 -0.2608 -3.9593 -4.4101 37 1 1.2477 -3.3198 -3.7081 38 1 2.4351 -5.3984 -4.2602 39 1 1.6434 -4.7784 -5.7297 40 1 1.2627 -7.2100 -5.5016 41 1 -0.2696 -6.3204 -5.3342 42 1 -0.7904 -8.5648 -4.3948 43 1 -2.0123 -11.6323 -3.9213 44 1 -0.3957 -6.5623 -1.6096 45 1 -1.3307 -6.0678 -3.0428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999357481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:32 Heat of formation + Delta-G solvation = -51.038792 kcal Electronic energy + Delta-G solvation = -27327.678088 eV Core-core repulsion = 23471.307965 eV Total energy + Delta-G solvation = -3856.370123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17079 -41.14532 -38.84907 -38.63793 -36.24984 -34.56315 -33.88441 -32.75599 -32.25690 -30.22193 -28.97357 -26.81605 -25.91599 -25.48847 -24.03502 -23.28603 -21.77960 -21.25461 -20.04049 -19.15388 -19.05908 -18.67734 -17.59569 -17.46189 -17.01599 -16.69106 -16.53972 -15.99261 -15.63890 -15.49981 -15.40329 -15.21601 -14.87513 -14.61935 -14.52421 -14.32913 -14.08931 -13.80826 -13.70561 -13.67881 -13.10736 -13.06977 -12.90800 -12.54480 -12.42809 -12.33672 -12.27111 -12.07528 -12.02283 -11.93106 -11.70910 -11.37740 -11.22414 -11.13886 -10.92735 -10.59730 -9.78147 -9.04311 -8.95853 -8.01338 -5.30566 -0.12510 0.38802 0.87522 1.11639 1.42218 1.44377 1.50616 1.51667 1.63721 2.05388 2.51131 3.31374 3.36996 3.57001 3.63228 3.72187 3.78706 3.98577 4.03004 4.14923 4.22893 4.27137 4.31042 4.36571 4.40398 4.55574 4.59115 4.68798 4.73816 4.76485 4.82095 4.85473 4.88588 5.00227 5.02385 5.11512 5.31857 5.35990 5.40601 5.42957 5.54090 5.74174 6.21433 6.23650 6.40260 7.08440 7.28147 8.00197 8.25704 9.20983 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.002370 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.898938 B =11813.220623 C =12213.626262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.091 3.909 3 C -0.219 4.219 4 S 0.001 5.999 5 C 0.458 3.542 6 O -0.524 6.524 7 N -0.529 5.529 8 C 0.120 3.880 9 C -0.138 4.138 10 C 0.510 3.490 11 O -0.590 6.590 12 N -0.604 5.604 13 C 0.102 3.898 14 C -0.124 4.124 15 C -0.118 4.118 16 C 0.166 3.834 17 H 0.026 0.974 18 N -0.729 5.729 19 C -0.247 4.247 20 H 0.063 0.937 21 C -0.066 4.066 22 N -0.962 5.962 23 Si 0.967 3.033 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.280 1.280 27 C 0.109 3.891 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.111 0.889 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.378 0.622 43 H 0.254 0.746 44 H 0.048 0.952 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 32.592 1.343 32.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.018 4.018 3 C -0.356 4.356 4 S 0.244 5.756 5 C 0.142 3.858 6 O -0.408 6.408 7 N -0.249 5.249 8 C -0.006 4.006 9 C -0.179 4.179 10 C 0.299 3.701 11 O -0.471 6.471 12 N -0.336 5.336 13 C -0.019 4.019 14 C -0.162 4.162 15 C -0.156 4.156 16 C 0.056 3.944 17 H 0.044 0.956 18 N -0.369 5.369 19 C -0.379 4.379 20 H 0.081 0.919 21 C -0.259 4.259 22 N -0.612 5.612 23 Si 0.796 3.204 24 H -0.209 1.209 25 H -0.214 1.214 26 H -0.206 1.206 27 C -0.017 4.017 28 H 0.112 0.888 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.247 0.753 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.211 0.789 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.309 32.296 2.020 32.792 hybrid contribution -1.148 -2.519 0.609 2.834 sum 4.161 29.777 2.629 30.181 Atomic orbital electron populations 1.20957 0.84061 1.05929 1.05120 1.20006 0.97297 0.83841 1.00688 1.25445 0.90603 1.02687 1.16839 1.85202 1.11286 0.98866 1.80264 1.22085 0.84284 0.96476 0.82991 1.90965 1.50101 1.44365 1.55336 1.46182 1.05885 1.08485 1.64340 1.21478 0.99770 0.82190 0.97135 1.21929 1.03106 0.94158 0.98667 1.20957 0.78418 0.87672 0.83038 1.90714 1.56242 1.67528 1.32613 1.48319 1.58558 1.19695 1.07045 1.22222 1.01208 0.96065 0.82435 1.21960 0.98128 0.94285 1.01866 1.21734 1.01249 0.97377 0.95267 1.20665 0.93101 0.85043 0.95587 0.95629 1.42487 1.55789 1.13026 1.25632 1.19451 1.22451 0.95002 1.01014 0.91940 1.25466 1.00053 1.00188 1.00188 1.69773 1.34860 1.25674 1.30910 0.85319 0.77479 0.78799 0.78832 1.20871 1.21373 1.20616 1.22198 0.96140 0.82560 1.00823 0.88780 0.86175 0.90582 0.75331 0.86592 0.91108 0.84379 0.87952 0.88872 0.86806 0.92431 0.87102 0.92356 0.91076 0.78931 0.93746 0.93355 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.36 9.30 71.24 0.66 0.31 16 2 C 0.09 0.90 6.59 40.71 0.27 1.17 16 3 C -0.22 -1.71 11.24 66.67 0.75 -0.96 16 4 S 0.00 0.01 22.97 -56.49 -1.30 -1.29 16 5 C 0.46 10.74 8.27 129.87 1.07 11.81 16 6 O -0.52 -17.02 17.55 -4.77 -0.08 -17.10 16 7 N -0.53 -9.23 2.60 -643.44 -1.68 -10.90 16 8 C 0.12 2.39 4.27 86.38 0.37 2.76 16 9 C -0.14 -2.48 4.27 29.85 0.13 -2.35 16 10 C 0.51 14.50 7.70 87.66 0.67 15.17 16 11 O -0.59 -22.63 15.39 -3.02 -0.05 -22.68 16 12 N -0.60 -16.74 2.97 -817.97 -2.43 -19.17 16 13 C 0.10 1.78 6.37 86.51 0.55 2.33 16 14 C -0.12 -2.50 6.10 30.82 0.19 -2.32 16 15 C -0.12 -3.51 5.35 30.62 0.16 -3.34 16 16 C 0.17 6.68 2.92 45.09 0.13 6.82 16 17 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 18 N -0.73 -37.30 5.12 -322.51 -1.65 -38.95 16 19 C -0.25 -14.30 9.93 84.03 0.83 -13.46 16 20 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 21 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 22 N -0.96 -58.96 13.06 21.65 0.28 -58.68 16 23 Si 0.97 47.77 29.55 68.60 2.03 49.80 16 24 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 27 C 0.11 4.09 6.02 86.38 0.52 4.61 16 28 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.12 -0.22 8.10 -2.39 -0.02 -0.24 16 30 H 0.08 0.36 6.22 -2.39 -0.01 0.34 16 31 H 0.23 -0.03 8.06 -2.91 -0.02 -0.05 16 32 H 0.12 1.99 6.79 -2.39 -0.02 1.97 16 33 H 0.07 1.92 7.75 -2.39 -0.02 1.91 16 34 H 0.14 1.36 7.31 -2.39 -0.02 1.35 16 35 H 0.10 1.87 7.70 -2.39 -0.02 1.85 16 36 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.11 1.24 5.93 -2.39 -0.01 1.22 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.38 20.19 7.80 -92.70 -0.72 19.46 16 43 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 44 H 0.05 2.22 7.01 -2.39 -0.02 2.21 16 45 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -81.65 378.25 2.20 -79.45 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.29 Total: 20.39 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 6.78 Total: 19.12 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -5.47 Total: -127.70 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -0.13 Total: -39.78 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.30 Total: -1.29 kcal Total: -81.65 2.20 -79.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999357481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.409 kcal (2) G-P(sol) polarization free energy of solvation -81.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds