Wall clock time and date at job start Tue Mar 31 2020 22:29:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 S 1.77229 * 127.33793 * 2 1
4 4 C 1.72220 * 94.84569 * 179.81197 * 3 2 1
5 5 O 1.21825 * 127.05630 * 180.20303 * 4 3 2
6 6 N 1.34240 * 105.88374 * 0.32262 * 4 3 2
7 7 C 1.46500 * 121.38248 * 179.87855 * 6 4 3
8 8 C 1.50694 * 109.47284 * 269.72180 * 7 6 4
9 9 O 1.21284 * 119.99775 * 359.97438 * 8 7 6
10 10 N 1.34775 * 120.00303 * 179.97438 * 8 7 6
11 11 C 1.46499 * 119.99838 * 359.97438 * 10 8 7
12 12 C 1.46498 * 120.00315 * 179.97438 * 10 8 7
13 13 C 1.53781 * 113.61237 * 63.22502 * 12 10 8
14 14 C 1.53778 * 87.07919 * 89.11963 * 13 12 10
15 15 N 1.46503 * 113.61257 * 270.79699 * 14 13 12
16 16 C 1.36934 * 120.00530 * 202.17187 * 15 14 13
17 17 H 1.08000 * 119.99517 * 0.02562 * 16 15 14
18 18 C 1.38803 * 120.00562 * 179.97438 * 16 15 14
19 19 N 1.31617 * 119.99937 * 0.02562 * 18 16 15
20 20 Si 1.86807 * 120.00360 * 179.97438 * 18 16 15
21 21 H 1.48501 * 109.46557 * 0.02562 * 20 18 16
22 22 H 1.48500 * 109.46828 * 120.00245 * 20 18 16
23 23 H 1.48497 * 109.47023 * 240.00326 * 20 18 16
24 24 C 1.53776 * 87.17633 * 25.38640 * 14 13 12
25 25 C 1.32564 * 127.34327 * 180.02562 * 2 1 3
26 26 C 1.50703 * 121.64271 * 359.97305 * 25 2 1
27 27 H 1.09001 * 109.46781 * 269.99686 * 1 2 3
28 28 H 1.08993 * 109.47296 * 29.99589 * 1 2 3
29 29 H 1.08999 * 109.47148 * 149.99740 * 1 2 3
30 30 H 1.08998 * 109.47164 * 149.71425 * 7 6 4
31 31 H 1.08998 * 109.46454 * 29.72144 * 7 6 4
32 32 H 1.08993 * 109.47210 * 268.85957 * 11 10 8
33 33 H 1.09004 * 109.47145 * 28.85659 * 11 10 8
34 34 H 1.09000 * 109.46995 * 148.85496 * 11 10 8
35 35 H 1.09004 * 112.90734 * 291.97256 * 12 10 8
36 36 H 1.08999 * 113.61298 * 334.56469 * 13 12 10
37 37 H 1.08999 * 113.61124 * 203.66465 * 13 12 10
38 38 H 1.08994 * 113.61470 * 139.98575 * 14 13 12
39 39 H 0.97003 * 119.99766 * 22.16935 * 15 14 13
40 40 H 0.97004 * 120.00231 * 179.97438 * 19 18 16
41 41 H 1.09005 * 113.60852 * 89.16017 * 24 14 13
42 42 H 1.08996 * 113.61803 * 220.05872 * 24 14 13
43 43 H 1.09004 * 109.47117 * 270.02545 * 26 25 2
44 44 H 1.09000 * 109.47176 * 30.02619 * 26 25 2
45 45 H 1.08997 * 109.47071 * 150.02942 * 26 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 16 2.5819 1.4091 0.0000
4 6 4.0345 0.4840 0.0056
5 8 5.1760 0.9096 0.0112
6 7 3.6509 -0.8024 -0.0001
7 6 4.6313 -1.8910 -0.0002
8 6 4.9675 -2.2641 -1.4210
9 8 4.4397 -1.6787 -2.3428
10 7 5.8547 -3.2482 -1.6674
11 6 6.4927 -3.9550 -0.5540
12 6 6.1811 -3.6113 -3.0487
13 6 6.8518 -2.4772 -3.8416
14 6 8.1959 -3.0176 -3.3257
15 7 8.6108 -2.4349 -2.0472
16 6 9.9313 -2.4485 -1.6848
17 1 10.6670 -2.8885 -2.3418
18 6 10.3245 -1.8960 -0.4737
19 7 9.4280 -1.3593 0.3267
20 14 12.1258 -1.9152 0.0209
21 1 12.9246 -2.5717 -1.0450
22 1 12.6023 -0.5213 0.2087
23 1 12.2821 -2.6673 1.2917
24 6 7.5055 -4.3844 -3.1845
25 6 2.3111 -1.0539 -0.0005
26 6 1.7707 -2.4607 -0.0005
27 1 -0.3633 -0.0001 1.0277
28 1 -0.3633 0.8900 -0.5137
29 1 -0.3633 -0.8900 -0.5139
30 1 4.2133 -2.7566 0.5136
31 1 5.5357 -1.5653 0.5137
32 1 7.4244 -3.4538 -0.2917
33 1 5.8247 -3.9541 0.3074
34 1 6.7036 -4.9828 -0.8492
35 1 5.3469 -4.0770 -3.5734
36 1 6.6096 -1.4818 -3.4695
37 1 6.7302 -2.5679 -4.9210
38 1 8.9883 -3.0038 -4.0740
39 1 7.9501 -2.0394 -1.4573
40 1 9.7027 -0.9735 1.1733
41 1 7.5630 -4.9975 -4.0840
42 1 7.7903 -4.9264 -2.2828
43 1 1.6404 -2.7999 1.0272
44 1 0.8097 -2.4807 -0.5144
45 1 2.4712 -3.1190 -0.5142
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000999875939.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:29:13
Heat of formation + Delta-G solvation = 16.567788 kcal
Electronic energy + Delta-G solvation = -28786.753953 eV
Core-core repulsion = 24933.315472 eV
Total energy + Delta-G solvation = -3853.438481 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.17938 -39.87547 -37.69916 -37.42157 -34.30428 -33.59759 -33.14743 -30.29467
-29.89874 -29.24554 -26.87444 -25.43356 -24.87385 -24.19025 -23.60144 -22.39897
-20.12573 -19.42882 -18.20133 -18.03003 -17.56078 -16.97106 -16.71540 -15.97442
-15.41701 -15.35255 -15.09200 -14.64755 -14.40312 -14.00637 -13.91050 -13.72871
-13.59734 -13.20491 -13.02708 -13.00681 -12.67561 -12.64092 -12.41629 -12.30706
-11.90916 -11.77545 -11.43773 -11.33045 -11.28446 -10.90220 -10.89799 -10.78693
-10.26839 -10.13488 -9.91995 -9.88412 -9.70987 -9.55293 -9.11411 -8.91320
-8.19063 -7.76823 -7.01367 -5.81833 -3.11171 1.06128 1.44728 1.81842
2.27646 2.75284 2.83929 3.33192 3.40047 3.46789 3.48928 4.42415
4.54018 4.57836 4.75370 4.86825 5.03928 5.09391 5.16264 5.19619
5.21458 5.32824 5.39986 5.40275 5.45627 5.47564 5.53686 5.68112
5.72161 5.76897 5.85152 5.92220 6.14518 6.19388 6.27578 6.43547
6.59057 6.63702 6.72532 6.79881 6.85938 7.07108 7.49744 7.65377
7.68698 8.36696 8.39114 9.48119 10.04829 10.40897 11.39865
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.014046 B = 0.003837 C = 0.003328
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1993.008664 B = 7295.535117 C = 8411.739704
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 C -0.216 4.216
3 S -0.011 6.011
4 C 0.489 3.511
5 O -0.450 6.450
6 N -0.514 5.514
7 C 0.082 3.918
8 C 0.503 3.497
9 O -0.533 6.533
10 N -0.581 5.581
11 C 0.062 3.938
12 C 0.130 3.870
13 C -0.163 4.163
14 C 0.166 3.834
15 N -0.704 5.704
16 C -0.245 4.245
17 H 0.072 0.928
18 C -0.009 4.009
19 N -0.928 5.928
20 Si 0.906 3.094
21 H -0.281 1.281
22 H -0.292 1.292
23 H -0.292 1.292
24 C -0.181 4.181
25 C 0.110 3.890
26 C -0.099 4.099
27 H 0.072 0.928
28 H 0.071 0.929
29 H 0.076 0.924
30 H 0.117 0.883
31 H 0.133 0.867
32 H 0.102 0.898
33 H 0.057 0.943
34 H 0.071 0.929
35 H 0.070 0.930
36 H 0.073 0.927
37 H 0.082 0.918
38 H 0.061 0.939
39 H 0.387 0.613
40 H 0.256 0.744
41 H 0.080 0.920
42 H 0.078 0.922
43 H 0.084 0.916
44 H 0.089 0.911
45 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.265 -5.913 0.804 20.168
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.336 4.336
3 S 0.232 5.768
4 C 0.170 3.830
5 O -0.326 6.326
6 N -0.234 5.234
7 C -0.047 4.047
8 C 0.289 3.711
9 O -0.409 6.409
10 N -0.314 5.314
11 C -0.080 4.080
12 C 0.027 3.973
13 C -0.203 4.203
14 C 0.053 3.947
15 N -0.344 5.344
16 C -0.376 4.376
17 H 0.090 0.910
18 C -0.206 4.206
19 N -0.575 5.575
20 Si 0.738 3.262
21 H -0.206 1.206
22 H -0.219 1.219
23 H -0.219 1.219
24 C -0.223 4.223
25 C -0.001 4.001
26 C -0.158 4.158
27 H 0.091 0.909
28 H 0.090 0.910
29 H 0.094 0.906
30 H 0.134 0.866
31 H 0.151 0.849
32 H 0.120 0.880
33 H 0.076 0.924
34 H 0.090 0.910
35 H 0.088 0.912
36 H 0.092 0.908
37 H 0.101 0.899
38 H 0.080 0.920
39 H 0.223 0.777
40 H 0.066 0.934
41 H 0.099 0.901
42 H 0.097 0.903
43 H 0.103 0.897
44 H 0.108 0.892
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -18.732 -3.975 0.362 19.153
hybrid contribution 1.257 -1.281 0.499 1.863
sum -17.475 -5.256 0.861 18.268
Atomic orbital electron populations
1.20055 0.85991 1.03080 1.02480 1.23336 0.99403 0.92215 1.18624
1.84955 0.98382 1.11507 1.81966 1.21460 0.94499 0.84638 0.82409
1.91082 1.18843 1.71194 1.51524 1.45570 1.05536 1.07133 1.65187
1.21813 0.95162 0.90926 0.96830 1.20499 0.79751 0.79919 0.90915
1.90701 1.52739 1.51852 1.45655 1.47417 1.41596 1.35442 1.06957
1.22193 1.00352 0.98153 0.87309 1.21812 0.96201 0.97802 0.81515
1.23727 0.98161 0.99317 0.99063 1.21135 0.93062 0.90727 0.89729
1.42343 1.06578 1.68337 1.17136 1.19318 0.84624 1.32316 1.01324
0.91021 1.24735 0.97592 1.00898 0.97349 1.69651 1.32095 1.43945
1.11838 0.86133 0.84859 0.77245 0.78004 1.20602 1.21875 1.21873
1.24241 0.95577 1.00411 1.02038 1.19146 0.82080 0.97944 1.00947
1.20743 1.02134 0.89472 1.03436 0.90912 0.91035 0.90577 0.86567
0.84887 0.87984 0.92384 0.90999 0.91177 0.90834 0.89904 0.92049
0.77709 0.93403 0.90124 0.90308 0.89697 0.89204 0.90888
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.42 10.10 36.01 0.36 -0.05 16
2 C -0.22 -2.49 6.72 -36.22 -0.24 -2.73 16
3 S -0.01 -0.16 22.97 -107.50 -2.47 -2.63 16
4 C 0.49 9.12 8.27 53.82 0.45 9.56 16
5 O -0.45 -10.39 17.55 5.08 0.09 -10.30 16
6 N -0.51 -8.05 2.09 -118.57 -0.25 -8.30 16
7 C 0.08 1.24 4.00 -5.20 -0.02 1.22 16
8 C 0.50 8.95 7.17 -10.99 -0.08 8.87 16
9 O -0.53 -11.07 15.38 5.55 0.09 -10.99 16
10 N -0.58 -9.73 2.08 -172.90 -0.36 -10.09 16
11 C 0.06 0.95 8.65 59.85 0.52 1.47 16
12 C 0.13 2.17 4.14 -67.03 -0.28 1.89 16
13 C -0.16 -3.05 7.13 -25.92 -0.18 -3.24 16
14 C 0.17 3.34 4.55 -67.12 -0.31 3.03 16
15 N -0.70 -17.29 4.06 -52.64 -0.21 -17.50 16
16 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16
17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16
18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16
19 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16
20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16
21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16
24 C -0.18 -2.94 7.17 -25.83 -0.19 -3.13 16
25 C 0.11 1.34 6.59 -82.51 -0.54 0.80 16
26 C -0.10 -0.81 9.07 36.01 0.33 -0.48 16
27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.08 0.43 6.77 -51.93 -0.35 0.08 16
30 H 0.12 1.24 6.09 -51.93 -0.32 0.92 16
31 H 0.13 2.31 7.76 -51.93 -0.40 1.90 16
32 H 0.10 2.04 6.15 -51.93 -0.32 1.72 16
33 H 0.06 0.69 6.40 -51.93 -0.33 0.36 16
34 H 0.07 0.98 6.55 -51.93 -0.34 0.64 16
35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
36 H 0.07 1.66 7.18 -51.93 -0.37 1.28 16
37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
38 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16
39 H 0.39 10.11 5.53 -40.82 -0.23 9.89 16
40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
42 H 0.08 1.32 5.90 -51.93 -0.31 1.02 16
43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
44 H 0.09 0.57 6.69 -51.93 -0.35 0.22 16
45 H 0.07 0.66 6.70 -51.93 -0.35 0.31 16
LS Contribution 371.92 15.07 5.60 5.60
Total: -1.00 -34.81 371.92 -8.41 -43.22
By element:
Atomic # 1 Polarization: 16.43 SS G_CDS: -6.17 Total: 10.27 kcal
Atomic # 6 Polarization: 10.52 SS G_CDS: -0.43 Total: 10.09 kcal
Atomic # 7 Polarization: -62.20 SS G_CDS: -0.10 Total: -62.29 kcal
Atomic # 8 Polarization: -21.46 SS G_CDS: 0.17 Total: -21.29 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal
Atomic # 16 Polarization: -0.16 SS G_CDS: -2.47 Total: -2.63 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -34.81 -8.41 -43.22 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999875939.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.783 kcal
(2) G-P(sol) polarization free energy of solvation -34.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.976 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.568 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds