Wall clock time and date at job start Tue Mar 31 2020 22:13:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.42900 * 114.00083 * 2 1
4 4 C 1.50695 * 109.47068 * 179.97438 * 3 2 1
5 5 N 1.29432 * 124.80617 * 89.97352 * 4 3 2
6 6 C 1.30940 * 117.36370 * 179.73162 * 5 4 3
7 7 C 1.50700 * 122.90338 * 180.35327 * 6 5 4
8 8 C 1.35660 * 114.19175 * 0.52475 * 6 5 4
9 9 C 1.46681 * 126.13084 * 179.79053 * 8 6 5
10 10 O 1.21688 * 120.00323 * 359.71125 * 9 8 6
11 11 N 1.34774 * 120.00155 * 179.71346 * 9 8 6
12 12 C 1.46499 * 120.00135 * 179.97438 * 11 9 8
13 13 H 1.09001 * 109.52536 * 35.08652 * 12 11 9
14 14 C 1.53047 * 109.49835 * 155.16423 * 12 11 9
15 15 C 1.53035 * 109.54037 * 181.31863 * 14 12 11
16 16 C 1.53200 * 109.31241 * 298.63494 * 15 14 12
17 17 N 1.46928 * 108.77407 * 54.63297 * 16 15 14
18 18 C 1.36938 * 120.62913 * 126.67083 * 17 16 15
19 19 H 1.08006 * 119.99609 * 331.59939 * 18 17 16
20 20 C 1.38805 * 120.00279 * 151.60586 * 18 17 16
21 21 N 1.31622 * 119.99962 * 343.10871 * 20 18 17
22 22 Si 1.86795 * 120.00332 * 163.11328 * 20 18 17
23 23 H 1.48499 * 109.47139 * 359.97438 * 22 20 18
24 24 H 1.48503 * 109.47582 * 119.99782 * 22 20 18
25 25 H 1.48509 * 109.47245 * 239.99922 * 22 20 18
26 26 C 1.46921 * 118.74007 * 306.39320 * 17 16 15
27 27 S 1.70951 * 124.80431 * 270.00065 * 4 3 2
28 28 H 1.09003 * 109.46497 * 59.99925 * 1 2 3
29 29 H 1.08993 * 109.47030 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.46995 * 300.00488 * 1 2 3
31 31 H 1.09003 * 109.46984 * 59.99818 * 3 2 1
32 32 H 1.08998 * 109.47031 * 299.99687 * 3 2 1
33 33 H 1.09000 * 109.46918 * 270.18323 * 7 6 5
34 34 H 1.08993 * 109.47534 * 30.18590 * 7 6 5
35 35 H 1.09000 * 109.47359 * 150.19077 * 7 6 5
36 36 H 0.97000 * 120.00331 * 0.02562 * 11 9 8
37 37 H 1.08997 * 109.45984 * 301.34130 * 14 12 11
38 38 H 1.08999 * 109.45888 * 61.30983 * 14 12 11
39 39 H 1.09008 * 109.50113 * 58.58231 * 15 14 12
40 40 H 1.08999 * 109.50437 * 178.68434 * 15 14 12
41 41 H 1.08996 * 109.58724 * 294.84597 * 16 15 14
42 42 H 1.08998 * 109.58389 * 174.42186 * 16 15 14
43 43 H 0.96995 * 120.00418 * 180.02562 * 21 20 18
44 44 H 1.09002 * 109.58682 * 173.39950 * 26 17 16
45 45 H 1.09005 * 109.58640 * 293.67648 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5126 1.1864 0.0006
5 7 4.2494 1.1274 -1.0618
6 6 5.5441 1.0304 -0.8917
7 6 6.5178 0.9610 -2.0398
8 6 5.9329 0.9940 0.4075
9 6 7.3121 0.8845 0.8949
10 8 8.2332 0.8114 0.1031
11 7 7.5591 0.8649 2.2196
12 6 8.9365 0.7550 2.7063
13 1 9.6044 1.2941 2.0344
14 6 9.0315 1.3554 4.1109
15 6 10.4766 1.2708 4.6071
16 6 10.9022 -0.1991 4.6799
17 7 10.6770 -0.8220 3.3684
18 6 11.6882 -1.4893 2.7301
19 1 12.7159 -1.2067 2.9044
20 6 11.3924 -2.5288 1.8590
21 7 10.2044 -3.0947 1.8891
22 14 12.6802 -3.1246 0.6442
23 1 13.9231 -2.3292 0.8106
24 1 12.9723 -4.5587 0.8959
25 1 12.1689 -2.9591 -0.7402
26 6 9.3446 -0.7207 2.7576
27 16 4.4847 1.1096 1.4047
28 1 -0.3632 0.5139 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.6886 1.8464 0.8900
32 1 1.6887 1.8463 -0.8900
33 1 6.6736 -0.0803 -2.3216
34 1 6.1162 1.5115 -2.8905
35 1 7.4679 1.4016 -1.7377
36 1 6.8249 0.9228 2.8509
37 1 8.7180 2.3989 4.0817
38 1 8.3822 0.8001 4.7878
39 1 11.1301 1.8050 3.9172
40 1 10.5481 1.7196 5.5979
41 1 10.3093 -0.7142 5.4356
42 1 11.9595 -0.2610 4.9371
43 1 9.9978 -3.8213 1.2807
44 1 9.3743 -1.1269 1.7465
45 1 8.6251 -1.2805 3.3552
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001009343999.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:13:12
Heat of formation + Delta-G solvation = -13.836767 kcal
Electronic energy + Delta-G solvation = -27324.019320 eV
Core-core repulsion = 23469.262398 eV
Total energy + Delta-G solvation = -3854.756922 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.39924 -39.22530 -38.14479 -37.23124 -34.21148 -32.71777 -32.50181 -30.11552
-29.49088 -29.00798 -27.61142 -26.40520 -25.26785 -23.04767 -22.72166 -22.13756
-20.87744 -19.79920 -18.99119 -18.13871 -17.01153 -16.89413 -16.75021 -16.10236
-15.75055 -15.30643 -15.17945 -14.75897 -14.10320 -14.05237 -13.89516 -13.77578
-13.45556 -13.12258 -12.99463 -12.74900 -12.48912 -12.42975 -12.38577 -12.28797
-11.88282 -11.79277 -11.38773 -11.01846 -10.78639 -10.71743 -10.50427 -10.26552
-10.22442 -10.01804 -9.97632 -9.94101 -9.60661 -9.53490 -9.47377 -8.91083
-8.59501 -8.42603 -6.64964 -5.74398 -3.18462 0.09327 1.01817 1.43992
2.32274 3.23283 3.40275 3.42969 3.45376 3.51642 3.53139 3.97486
4.49762 4.55108 4.83210 4.89957 4.91311 4.94006 5.00132 5.11794
5.29122 5.33462 5.39402 5.53467 5.61563 5.66714 5.73923 5.80534
5.92513 6.05604 6.11831 6.31274 6.37642 6.40738 6.48200 6.59918
6.67139 6.75108 6.86025 6.95417 7.26710 7.48892 7.72283 7.77526
7.86000 8.44669 8.50212 9.23724 9.87616 10.42512 11.33516
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.013837 B = 0.003046 C = 0.002782
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2023.121592 B = 9189.956244 C =10061.707760
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.381 6.381
3 C 0.140 3.860
4 C 0.045 3.955
5 N -0.457 5.457
6 C 0.140 3.860
7 C -0.089 4.089
8 C -0.278 4.278
9 C 0.591 3.409
10 O -0.509 6.509
11 N -0.713 5.713
12 C 0.118 3.882
13 H 0.086 0.914
14 C -0.117 4.117
15 C -0.130 4.130
16 C 0.142 3.858
17 N -0.588 5.588
18 C -0.256 4.256
19 H 0.067 0.933
20 C 0.006 3.994
21 N -0.898 5.898
22 Si 0.902 3.098
23 H -0.277 1.277
24 H -0.291 1.291
25 H -0.287 1.287
26 C 0.167 3.833
27 S 0.182 5.818
28 H 0.045 0.955
29 H 0.091 0.909
30 H 0.045 0.955
31 H 0.075 0.925
32 H 0.084 0.916
33 H 0.083 0.917
34 H 0.072 0.928
35 H 0.102 0.898
36 H 0.389 0.611
37 H 0.051 0.949
38 H 0.059 0.941
39 H 0.061 0.939
40 H 0.056 0.944
41 H 0.018 0.982
42 H 0.056 0.944
43 H 0.253 0.747
44 H 0.095 0.905
45 H 0.018 0.982
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.678 12.232 0.390 22.330
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.300 6.300
3 C 0.060 3.940
4 C -0.231 4.231
5 N -0.173 5.173
6 C 0.003 3.997
7 C -0.148 4.148
8 C -0.402 4.402
9 C 0.375 3.625
10 O -0.386 6.386
11 N -0.363 5.363
12 C 0.013 3.987
13 H 0.104 0.896
14 C -0.155 4.155
15 C -0.170 4.170
16 C 0.015 3.985
17 N -0.311 5.311
18 C -0.386 4.386
19 H 0.085 0.915
20 C -0.193 4.193
21 N -0.542 5.542
22 Si 0.732 3.268
23 H -0.202 1.202
24 H -0.218 1.218
25 H -0.214 1.214
26 C 0.040 3.960
27 S 0.439 5.561
28 H 0.064 0.936
29 H 0.110 0.890
30 H 0.064 0.936
31 H 0.093 0.907
32 H 0.102 0.898
33 H 0.101 0.899
34 H 0.091 0.909
35 H 0.121 0.879
36 H 0.222 0.778
37 H 0.070 0.930
38 H 0.078 0.922
39 H 0.080 0.920
40 H 0.075 0.925
41 H 0.036 0.964
42 H 0.074 0.926
43 H 0.063 0.937
44 H 0.113 0.887
45 H 0.036 0.964
Dipole moment (debyes) X Y Z Total
from point charges -18.435 11.894 0.348 21.942
hybrid contribution 0.339 -0.284 -0.973 1.068
sum -18.097 11.611 -0.624 21.510
Atomic orbital electron populations
1.22817 0.79918 1.03441 1.00295 1.87997 1.20352 1.26100 1.95508
1.20804 0.84359 0.86226 1.02578 1.26736 1.00350 1.04200 0.91796
1.66001 1.04620 1.15357 1.31331 1.20661 0.89583 0.95536 0.93926
1.20677 0.97075 1.03858 0.93178 1.25779 0.98440 1.18767 0.97216
1.16602 0.85503 0.77339 0.83034 1.90836 1.43896 1.49230 1.54684
1.45999 1.10319 1.74329 1.05649 1.22064 0.80244 1.01990 0.94414
0.89607 1.21686 0.98342 0.99368 0.96085 1.22000 0.95264 1.00035
0.99709 1.20970 0.98700 0.90293 0.88515 1.43973 1.09185 1.62164
1.15754 1.19174 0.87646 1.09873 1.21894 0.91538 1.25056 0.96924
0.95963 1.01327 1.70018 1.21322 1.24592 1.38273 0.86239 0.81058
0.78024 0.81525 1.20198 1.21770 1.21379 1.21088 0.85703 0.88404
1.00844 1.83698 0.96778 1.64664 1.10990 0.93591 0.89029 0.93643
0.90674 0.89843 0.89858 0.90942 0.87915 0.77760 0.93013 0.92194
0.92041 0.92543 0.96400 0.92555 0.93671 0.88677 0.96425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 11.01 101.05 1.11 1.31 16
2 O -0.38 -3.95 10.69 -35.23 -0.38 -4.33 16
3 C 0.14 1.24 6.51 36.00 0.23 1.48 16
4 C 0.04 0.55 7.01 -13.29 -0.09 0.46 16
5 N -0.46 -6.68 10.50 -7.71 -0.08 -6.76 16
6 C 0.14 2.19 6.79 -83.89 -0.57 1.62 16
7 C -0.09 -1.31 9.69 36.01 0.35 -0.96 16
8 C -0.28 -4.36 6.48 -37.10 -0.24 -4.60 16
9 C 0.59 10.88 7.74 -12.85 -0.10 10.78 16
10 O -0.51 -11.14 13.94 5.20 0.07 -11.07 16
11 N -0.71 -12.08 5.08 -54.99 -0.28 -12.36 16
12 C 0.12 2.29 2.60 -67.81 -0.18 2.12 16
13 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16
14 C -0.12 -1.86 5.35 -26.69 -0.14 -2.01 16
15 C -0.13 -2.17 6.08 -26.61 -0.16 -2.34 16
16 C 0.14 2.92 6.52 -3.71 -0.02 2.90 16
17 N -0.59 -14.93 2.99 -172.32 -0.52 -15.45 16
18 C -0.26 -7.20 9.58 -15.06 -0.14 -7.34 16
19 H 0.07 1.83 7.89 -52.48 -0.41 1.41 16
20 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16
21 N -0.90 -26.97 11.20 55.49 0.62 -26.35 16
22 Si 0.90 22.60 29.59 -169.99 -5.03 17.58 16
23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
26 C 0.17 4.08 4.87 -3.71 -0.02 4.06 16
27 S 0.18 2.14 22.31 -107.50 -2.40 -0.26 16
28 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16
29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16
31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16
32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16
33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16
34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
35 H 0.10 1.65 6.02 -51.93 -0.31 1.34 16
36 H 0.39 5.40 7.79 -40.82 -0.32 5.09 16
37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
39 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16
40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
42 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16
43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16
44 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16
45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
LS Contribution 380.19 15.07 5.73 5.73
Total: -1.00 -34.24 380.19 -9.11 -43.35
By element:
Atomic # 1 Polarization: 9.13 SS G_CDS: -6.80 Total: 2.34 kcal
Atomic # 6 Polarization: 7.63 SS G_CDS: -0.06 Total: 7.57 kcal
Atomic # 7 Polarization: -60.66 SS G_CDS: -0.25 Total: -60.91 kcal
Atomic # 8 Polarization: -15.09 SS G_CDS: -0.30 Total: -15.39 kcal
Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.58 kcal
Atomic # 16 Polarization: 2.14 SS G_CDS: -2.40 Total: -0.26 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -34.24 -9.11 -43.35 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001009343999.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.517 kcal
(2) G-P(sol) polarization free energy of solvation -34.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.724 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.837 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds