Wall clock time and date at job start Tue Mar 31 2020 22:31:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 S 1.77231 * 127.33804 * 2 1
4 4 C 1.72205 * 94.84895 * 179.97438 * 3 2 1
5 5 O 1.21825 * 127.06192 * 179.97438 * 4 3 2
6 6 N 1.34254 * 105.88405 * 359.97438 * 4 3 2
7 7 C 1.46494 * 121.38044 * 179.97438 * 6 4 3
8 8 C 1.50694 * 109.47583 * 90.02556 * 7 6 4
9 9 O 1.21287 * 119.99894 * 359.97438 * 8 7 6
10 10 N 1.34774 * 120.00376 * 180.02562 * 8 7 6
11 11 C 1.46500 * 120.00138 * 180.02562 * 10 8 7
12 12 H 1.09001 * 109.49647 * 324.93030 * 11 10 8
13 13 C 1.53037 * 109.49571 * 204.83727 * 11 10 8
14 14 C 1.53046 * 109.53826 * 178.68036 * 13 11 10
15 15 C 1.53194 * 109.31026 * 61.36305 * 14 13 11
16 16 N 1.46930 * 108.77748 * 305.36506 * 15 14 13
17 17 C 1.36933 * 120.63126 * 233.63423 * 16 15 14
18 18 H 1.08000 * 120.00223 * 27.65550 * 17 16 15
19 19 C 1.38816 * 120.00080 * 207.65936 * 17 16 15
20 20 N 1.31624 * 119.99863 * 17.37002 * 19 17 16
21 21 Si 1.86796 * 120.00182 * 197.37404 * 19 17 16
22 22 H 1.48503 * 109.47089 * 359.97438 * 21 19 17
23 23 H 1.48494 * 109.47550 * 119.99771 * 21 19 17
24 24 H 1.48504 * 109.46989 * 240.00040 * 21 19 17
25 25 C 1.46923 * 118.73650 * 53.60645 * 16 15 14
26 26 C 1.32566 * 127.34511 * 180.25796 * 2 1 3
27 27 C 1.50704 * 121.63992 * 359.97438 * 26 2 1
28 28 H 1.09004 * 109.47353 * 0.02657 * 1 2 3
29 29 H 1.09003 * 109.46847 * 120.02865 * 1 2 3
30 30 H 1.08998 * 109.47351 * 240.02821 * 1 2 3
31 31 H 1.09000 * 109.47033 * 330.02243 * 7 6 4
32 32 H 1.09003 * 109.47138 * 210.02723 * 7 6 4
33 33 H 0.96994 * 120.00046 * 0.26796 * 10 8 7
34 34 H 1.09002 * 109.45900 * 298.69597 * 13 11 10
35 35 H 1.08999 * 109.46659 * 58.66142 * 13 11 10
36 36 H 1.08994 * 109.49662 * 301.41550 * 14 13 11
37 37 H 1.08995 * 109.52707 * 181.32999 * 14 13 11
38 38 H 1.09004 * 109.58754 * 185.57842 * 15 14 13
39 39 H 1.08995 * 109.59028 * 65.15310 * 15 14 13
40 40 H 0.96989 * 120.00148 * 180.02562 * 20 19 17
41 41 H 1.09001 * 109.58778 * 186.60277 * 25 16 15
42 42 H 1.09006 * 109.58571 * 66.18604 * 25 16 15
43 43 H 1.08997 * 109.47179 * 270.23609 * 27 26 2
44 44 H 1.08993 * 109.47618 * 30.24299 * 27 26 2
45 45 H 1.09005 * 109.46886 * 150.24329 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 16 2.5819 1.4091 0.0000
4 6 4.0344 0.4841 0.0008
5 8 5.1759 0.9098 0.0006
6 7 3.6508 -0.8024 0.0016
7 6 4.6313 -1.8908 0.0018
8 6 4.9675 -2.2638 1.4226
9 8 4.4404 -1.6777 2.3444
10 7 5.8548 -3.2479 1.6691
11 6 6.1812 -3.6108 3.0504
12 1 6.1696 -2.7168 3.6739
13 6 7.5719 -4.2481 3.0960
14 6 7.9275 -4.5977 4.5429
15 6 6.9133 -5.6107 5.0833
16 7 5.5605 -5.0644 4.9095
17 6 4.7014 -4.9773 5.9722
18 1 5.0907 -4.8719 6.9741
19 6 3.3301 -5.0247 5.7619
20 7 2.8543 -5.4871 4.6251
21 14 2.1601 -4.4321 7.0920
22 1 2.9408 -3.9641 8.2654
23 1 1.3380 -3.3132 6.5656
24 1 1.2714 -5.5487 7.5028
25 6 5.1473 -4.6126 3.5739
26 6 2.3111 -1.0539 -0.0047
27 6 1.7707 -2.4607 -0.0105
28 1 -0.3634 1.0277 -0.0005
29 1 -0.3633 -0.5143 -0.8898
30 1 -0.3634 -0.5134 0.8902
31 1 5.5357 -1.5652 -0.5121
32 1 4.2132 -2.7566 -0.5119
33 1 6.2799 -3.7135 0.9320
34 1 7.5755 -5.1554 2.4919
35 1 8.3063 -3.5461 2.7011
36 1 7.8998 -3.6946 5.1527
37 1 8.9275 -5.0299 4.5781
38 1 7.1026 -5.7880 6.1420
39 1 7.0029 -6.5469 4.5323
40 1 1.8962 -5.5198 4.4779
41 1 4.1713 -4.1314 3.6366
42 1 5.0928 -5.4674 2.8997
43 1 1.6368 -2.8027 1.0157
44 1 0.8115 -2.4794 -0.5278
45 1 2.4731 -3.1176 -0.5236
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001009644170.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:31:02
Heat of formation + Delta-G solvation = -18.407010 kcal
Electronic energy + Delta-G solvation = -28283.678097 eV
Core-core repulsion = 24428.722995 eV
Total energy + Delta-G solvation = -3854.955102 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.22986 -39.23754 -37.69103 -37.26430 -34.21703 -33.62043 -32.74347 -30.58766
-30.02940 -29.62649 -28.39921 -25.32039 -25.13535 -23.75701 -22.28171 -21.87201
-20.30966 -19.85305 -19.32362 -18.26228 -17.45126 -17.04600 -16.76265 -15.68578
-15.62947 -15.12804 -15.03610 -14.56529 -14.07789 -14.03645 -13.89598 -13.68845
-13.64353 -13.48450 -13.13817 -12.94325 -12.65454 -12.57337 -12.45098 -12.37138
-11.99471 -11.94702 -11.42055 -11.06259 -10.97263 -10.82191 -10.75957 -10.53226
-10.26952 -10.11452 -10.09096 -9.98358 -9.82178 -9.58000 -9.22459 -8.65212
-8.47864 -7.86245 -6.70602 -5.80829 -3.23153 0.93085 1.36936 1.70969
2.11460 2.65256 2.80668 3.38031 3.44182 3.47089 3.48939 4.39188
4.49990 4.62061 4.78811 4.86667 4.93215 5.05940 5.28686 5.30460
5.35550 5.36127 5.49724 5.50739 5.57557 5.60743 5.64554 5.71864
5.80065 6.02987 6.10110 6.14622 6.28040 6.38255 6.43161 6.64278
6.67587 6.72277 6.83595 6.91636 7.21539 7.28526 7.64972 7.74949
7.81147 8.42189 8.47383 9.18515 9.82371 10.36910 11.27375
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.011413 B = 0.003959 C = 0.003236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2452.683886 B = 7071.153831 C = 8651.628809
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 C -0.211 4.211
3 S -0.001 6.001
4 C 0.489 3.511
5 O -0.477 6.477
6 N -0.512 5.512
7 C 0.079 3.921
8 C 0.495 3.505
9 O -0.516 6.516
10 N -0.715 5.715
11 C 0.117 3.883
12 H 0.081 0.919
13 C -0.116 4.116
14 C -0.131 4.131
15 C 0.142 3.858
16 N -0.589 5.589
17 C -0.255 4.255
18 H 0.067 0.933
19 C 0.007 3.993
20 N -0.900 5.900
21 Si 0.900 3.100
22 H -0.277 1.277
23 H -0.288 1.288
24 H -0.290 1.290
25 C 0.169 3.831
26 C 0.111 3.889
27 C -0.102 4.102
28 H 0.071 0.929
29 H 0.076 0.924
30 H 0.078 0.922
31 H 0.120 0.880
32 H 0.122 0.878
33 H 0.393 0.607
34 H 0.060 0.940
35 H 0.051 0.949
36 H 0.060 0.940
37 H 0.056 0.944
38 H 0.056 0.944
39 H 0.019 0.981
40 H 0.252 0.748
41 H 0.094 0.906
42 H 0.017 0.983
43 H 0.095 0.905
44 H 0.089 0.911
45 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.213 5.264 -15.089 15.982
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.331 4.331
3 S 0.242 5.758
4 C 0.171 3.829
5 O -0.357 6.357
6 N -0.231 5.231
7 C -0.050 4.050
8 C 0.277 3.723
9 O -0.390 6.390
10 N -0.367 5.367
11 C 0.012 3.988
12 H 0.099 0.901
13 C -0.154 4.154
14 C -0.171 4.171
15 C 0.016 3.984
16 N -0.311 5.311
17 C -0.384 4.384
18 H 0.085 0.915
19 C -0.192 4.192
20 N -0.544 5.544
21 Si 0.730 3.270
22 H -0.202 1.202
23 H -0.214 1.214
24 H -0.217 1.217
25 C 0.041 3.959
26 C 0.001 3.999
27 C -0.161 4.161
28 H 0.090 0.910
29 H 0.094 0.906
30 H 0.096 0.904
31 H 0.138 0.862
32 H 0.140 0.860
33 H 0.226 0.774
34 H 0.078 0.922
35 H 0.070 0.930
36 H 0.079 0.921
37 H 0.075 0.925
38 H 0.074 0.926
39 H 0.037 0.963
40 H 0.062 0.938
41 H 0.112 0.888
42 H 0.035 0.965
43 H 0.113 0.887
44 H 0.108 0.892
45 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -0.227 7.279 -14.414 16.150
hybrid contribution 0.031 -1.341 0.303 1.375
sum -0.196 5.938 -14.111 15.311
Atomic orbital electron populations
1.20068 0.85750 1.03046 1.02889 1.23392 0.99575 0.91820 1.18276
1.84922 0.98003 1.11514 1.81325 1.21456 0.94572 0.84609 0.82224
1.90941 1.19328 1.71815 1.53647 1.45492 1.05832 1.06925 1.64885
1.21755 0.94603 0.91560 0.97116 1.20534 0.80328 0.80661 0.90732
1.90800 1.50771 1.52095 1.45366 1.45991 1.44101 1.36836 1.09762
1.22027 0.96106 1.00244 0.80444 0.90079 1.21673 0.95722 0.99828
0.98158 1.22006 0.98830 1.00986 0.95298 1.20966 0.85692 0.93194
0.98567 1.43971 1.10508 1.70395 1.06267 1.19208 0.86975 1.44582
0.87637 0.91547 1.25001 0.97417 0.99521 0.97255 1.70028 1.12048
1.47284 1.25061 0.86255 0.81077 0.78258 0.81399 1.20179 1.21420
1.21698 1.21071 0.96673 0.92933 0.85178 1.19243 0.81723 0.98354
1.00608 1.20819 1.01659 0.88714 1.04919 0.91019 0.90587 0.90359
0.86181 0.85991 0.77359 0.92173 0.93046 0.92122 0.92534 0.92573
0.96331 0.93803 0.88754 0.96496 0.88695 0.89181 0.90773
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.49 9.56 36.00 0.34 -0.14 16
2 C -0.21 -2.50 6.72 -36.22 -0.24 -2.75 16
3 S 0.00 -0.02 22.97 -107.50 -2.47 -2.48 16
4 C 0.49 7.97 8.27 53.82 0.45 8.41 16
5 O -0.48 -8.99 17.55 5.08 0.09 -8.90 16
6 N -0.51 -7.28 2.09 -118.57 -0.25 -7.53 16
7 C 0.08 0.97 5.75 -5.20 -0.03 0.94 16
8 C 0.49 8.34 7.86 -10.99 -0.09 8.25 16
9 O -0.52 -11.53 16.09 5.55 0.09 -11.44 16
10 N -0.72 -10.98 5.08 -53.69 -0.27 -11.25 16
11 C 0.12 2.23 2.60 -67.81 -0.18 2.06 16
12 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16
13 C -0.12 -1.83 5.35 -26.69 -0.14 -1.97 16
14 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16
15 C 0.14 2.91 6.52 -3.71 -0.02 2.88 16
16 N -0.59 -14.74 2.99 -172.32 -0.52 -15.25 16
17 C -0.25 -7.09 9.59 -15.06 -0.14 -7.23 16
18 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16
19 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16
20 N -0.90 -26.00 11.19 55.49 0.62 -25.38 16
21 Si 0.90 22.27 29.59 -169.99 -5.03 17.24 16
22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
25 C 0.17 3.97 4.89 -3.72 -0.02 3.96 16
26 C 0.11 1.39 6.59 -82.51 -0.54 0.85 16
27 C -0.10 -1.03 9.46 36.01 0.34 -0.69 16
28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
29 H 0.08 0.47 7.99 -51.93 -0.41 0.06 16
30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.12 1.27 7.80 -51.93 -0.41 0.87 16
32 H 0.12 1.04 6.11 -51.93 -0.32 0.72 16
33 H 0.39 4.40 8.60 -40.82 -0.35 4.05 16
34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16
39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16
41 H 0.09 2.62 6.03 -51.93 -0.31 2.31 16
42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16
44 H 0.09 0.66 7.41 -51.93 -0.39 0.27 16
45 H 0.07 0.63 6.18 -51.93 -0.32 0.30 16
LS Contribution 378.15 15.07 5.70 5.70
Total: -1.00 -35.97 378.15 -9.23 -45.20
By element:
Atomic # 1 Polarization: 8.47 SS G_CDS: -6.67 Total: 1.80 kcal
Atomic # 6 Polarization: 12.83 SS G_CDS: -0.53 Total: 12.30 kcal
Atomic # 7 Polarization: -59.00 SS G_CDS: -0.42 Total: -59.42 kcal
Atomic # 8 Polarization: -20.52 SS G_CDS: 0.18 Total: -20.34 kcal
Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal
Atomic # 16 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.48 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -35.97 -9.23 -45.20 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001009644170.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.789 kcal
(2) G-P(sol) polarization free energy of solvation -35.965 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.176 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.407 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds