Wall clock time and date at job start Tue Mar 31 2020 22:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00008 * 2 1 4 4 C 1.50700 * 109.47174 * 179.97438 * 3 2 1 5 5 N 1.29427 * 124.80809 * 89.97603 * 4 3 2 6 6 C 1.30941 * 117.36672 * 179.72940 * 5 4 3 7 7 C 1.50701 * 122.90645 * 180.34405 * 6 5 4 8 8 C 1.35664 * 114.19025 * 0.52707 * 6 5 4 9 9 C 1.46676 * 126.13222 * 179.79233 * 8 6 5 10 10 O 1.21689 * 120.00043 * 359.70131 * 9 8 6 11 11 N 1.34777 * 120.00245 * 179.71486 * 9 8 6 12 12 C 1.46503 * 120.00011 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46708 * 185.08684 * 12 11 9 14 14 H 1.09004 * 109.87593 * 303.54812 * 13 12 11 15 15 C 1.54324 * 109.88817 * 64.57111 * 13 12 11 16 16 C 1.55159 * 102.94521 * 141.60553 * 15 13 12 17 17 C 1.54912 * 101.58141 * 324.50131 * 16 15 13 18 18 N 1.47031 * 109.87946 * 182.37892 * 13 12 11 19 19 C 1.36934 * 125.64805 * 61.60594 * 18 13 12 20 20 H 1.08000 * 120.00270 * 13.60042 * 19 18 13 21 21 C 1.38808 * 119.99628 * 193.60384 * 19 18 13 22 22 N 1.31611 * 120.00376 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99751 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47403 * 59.99746 * 23 21 19 25 25 H 1.48497 * 109.47373 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47374 * 299.99906 * 23 21 19 27 27 S 1.70958 * 124.80309 * 269.99686 * 4 3 2 28 28 H 1.08993 * 109.46714 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46979 * 300.00415 * 1 2 3 30 30 H 1.08996 * 109.46729 * 60.00527 * 1 2 3 31 31 H 1.09002 * 109.47191 * 59.99554 * 3 2 1 32 32 H 1.09001 * 109.47239 * 300.00033 * 3 2 1 33 33 H 1.08992 * 109.47291 * 270.19133 * 7 6 5 34 34 H 1.08999 * 109.46910 * 30.19334 * 7 6 5 35 35 H 1.08996 * 109.46751 * 150.19068 * 7 6 5 36 36 H 0.96998 * 119.99798 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47231 * 65.08215 * 12 11 9 38 38 H 1.08997 * 109.46653 * 305.08193 * 12 11 9 39 39 H 1.08995 * 110.72073 * 259.97321 * 15 13 12 40 40 H 1.09002 * 110.71713 * 23.24396 * 15 13 12 41 41 H 1.09008 * 110.99633 * 82.57346 * 16 15 13 42 42 H 1.08991 * 111.00234 * 206.42287 * 16 15 13 43 43 H 1.08999 * 110.36407 * 278.16979 * 17 16 15 44 44 H 1.09004 * 110.36349 * 155.84496 * 17 16 15 45 45 H 0.97002 * 120.00528 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2495 1.1275 -1.0617 6 6 5.5442 1.0306 -0.8916 7 6 6.5178 0.9611 -2.0397 8 6 5.9329 0.9941 0.4076 9 6 7.3120 0.8848 0.8950 10 8 8.2332 0.8116 0.1031 11 7 7.5591 0.8650 2.2197 12 6 8.9365 0.7552 2.7065 13 6 8.9300 0.6274 4.2311 14 1 8.4051 1.4750 4.6718 15 6 8.2401 -0.6897 4.6445 16 6 9.0980 -1.1695 5.8450 17 6 10.5159 -0.7181 5.4141 18 7 10.3104 0.5737 4.7342 19 6 11.2499 1.5601 4.5940 20 1 10.9517 2.5491 4.2788 21 6 12.5856 1.2887 4.8568 22 7 12.9490 0.0836 5.2413 23 14 13.8673 2.6340 4.6648 24 1 13.5437 3.7600 5.5773 25 1 15.2079 2.0925 5.0036 26 1 13.8692 3.1192 3.2613 27 16 4.4847 1.1098 1.4048 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 6.6736 -0.0802 -2.3215 34 1 6.1162 1.5116 -2.8905 35 1 7.4678 1.4018 -1.7375 36 1 6.8249 0.9235 2.8509 37 1 9.4956 1.6456 2.4188 38 1 9.4069 -0.1259 2.2700 39 1 7.2116 -0.5055 4.9546 40 1 8.2749 -1.4149 3.8314 41 1 8.7930 -0.6729 6.7662 42 1 9.0486 -2.2530 5.9522 43 1 10.9523 -1.4432 4.7271 44 1 11.1549 -0.5897 6.2878 45 1 13.8825 -0.1062 5.4246 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028286964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:42 Heat of formation + Delta-G solvation = -10.848334 kcal Electronic energy + Delta-G solvation = -26742.728777 eV Core-core repulsion = 22888.101444 eV Total energy + Delta-G solvation = -3854.627334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.52225 -39.24131 -38.22290 -37.58697 -34.39635 -32.65683 -32.50588 -29.97293 -29.19576 -29.11273 -27.81149 -26.49680 -24.92763 -23.96009 -23.06761 -21.58578 -20.29248 -19.96335 -19.19628 -18.27683 -17.24199 -17.07481 -16.59511 -16.22146 -15.85110 -15.58174 -15.39915 -14.76760 -14.50526 -14.33776 -14.04010 -13.87388 -13.51547 -13.22349 -13.04345 -12.83111 -12.63436 -12.46420 -12.10649 -11.91735 -11.89189 -11.77333 -11.51660 -11.35725 -10.97076 -10.79201 -10.36533 -10.29150 -10.15454 -10.11418 -9.98273 -9.87676 -9.76161 -9.73497 -9.66666 -9.05954 -8.74269 -8.60526 -6.87986 -5.78356 -3.15413 -0.04020 0.89325 1.31828 2.18593 3.13165 3.21509 3.31743 3.40248 3.44560 3.45433 3.87183 4.40635 4.46648 4.73984 4.77924 4.80895 4.86733 4.92099 4.99890 5.21517 5.29753 5.36597 5.47920 5.58225 5.59706 5.65127 5.77040 5.77813 6.00747 6.08853 6.21145 6.23674 6.42539 6.50047 6.50619 6.54643 6.65052 6.74993 7.00048 7.35443 7.49920 7.57346 7.61885 7.77163 8.22281 8.27547 9.15015 9.75524 10.42284 11.33124 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.002498 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.514799 B =11206.446919 C =12169.920109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.047 3.953 5 N -0.458 5.458 6 C 0.141 3.859 7 C -0.089 4.089 8 C -0.283 4.283 9 C 0.589 3.411 10 O -0.520 6.520 11 N -0.715 5.715 12 C 0.109 3.891 13 C 0.151 3.849 14 H 0.038 0.962 15 C -0.128 4.128 16 C -0.148 4.148 17 C 0.171 3.829 18 N -0.588 5.588 19 C -0.236 4.236 20 H 0.076 0.924 21 C -0.001 4.001 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 S 0.187 5.813 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.393 0.607 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.026 0.974 44 H 0.075 0.925 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.679 0.872 -7.358 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.228 4.228 5 N -0.174 5.174 6 C 0.004 3.996 7 C -0.148 4.148 8 C -0.408 4.408 9 C 0.373 3.627 10 O -0.398 6.398 11 N -0.365 5.365 12 C -0.016 4.016 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.166 4.166 16 C -0.187 4.187 17 C 0.047 3.953 18 N -0.312 5.312 19 C -0.364 4.364 20 H 0.094 0.906 21 C -0.198 4.198 22 N -0.561 5.561 23 Si 0.741 3.259 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.209 1.209 27 S 0.444 5.556 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.226 0.774 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.093 0.907 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -24.124 0.701 -7.223 25.191 hybrid contribution 0.619 0.825 -0.570 1.178 sum -23.504 1.525 -7.792 24.809 Atomic orbital electron populations 1.22822 0.79815 1.03456 1.00400 1.87977 1.20445 1.26101 1.95537 1.20823 0.84278 0.86241 1.02741 1.26770 1.00424 1.03849 0.91801 1.66010 1.04596 1.15445 1.31347 1.20669 0.89631 0.95467 0.93880 1.20674 0.97155 1.03647 0.93305 1.25766 0.98498 1.19224 0.97284 1.16683 0.85522 0.77460 0.83051 1.90806 1.44109 1.50055 1.54861 1.46076 1.11075 1.73825 1.05566 1.22357 0.79423 1.02750 0.97031 1.21134 0.88984 0.95602 0.90003 0.94447 1.22623 0.97848 0.97337 0.98770 1.23008 0.99315 0.99347 0.97011 1.21489 0.90754 0.86164 0.96925 1.44482 1.07222 1.17018 1.62460 1.18939 0.86352 0.89865 1.41246 0.90650 1.24902 0.96963 0.96675 1.01272 1.69920 1.16245 1.19141 1.50820 0.86217 0.80794 0.80761 0.78096 1.21070 1.21545 1.20924 1.83796 0.96563 1.64450 1.10777 0.89015 0.93573 0.93533 0.90550 0.89762 0.90019 0.90819 0.87911 0.77383 0.91103 0.91131 0.92399 0.91778 0.92259 0.92291 0.95640 0.90676 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.47 10.69 -35.23 -0.38 -3.85 16 3 C 0.14 1.08 6.51 36.01 0.23 1.32 16 4 C 0.05 0.51 7.02 -13.29 -0.09 0.42 16 5 N -0.46 -6.00 10.50 -7.70 -0.08 -6.08 16 6 C 0.14 1.95 6.79 -83.89 -0.57 1.38 16 7 C -0.09 -1.12 9.69 36.01 0.35 -0.77 16 8 C -0.28 -3.93 6.48 -37.10 -0.24 -4.17 16 9 C 0.59 9.64 7.78 -12.85 -0.10 9.54 16 10 O -0.52 -10.10 14.27 5.20 0.07 -10.02 16 11 N -0.71 -11.06 5.32 -61.62 -0.33 -11.39 16 12 C 0.11 2.08 5.07 -4.04 -0.02 2.06 16 13 C 0.15 2.95 3.22 -66.95 -0.22 2.73 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C -0.13 -2.11 6.10 -24.90 -0.15 -2.26 16 16 C -0.15 -2.68 7.09 -24.58 -0.17 -2.85 16 17 C 0.17 4.04 5.43 -2.53 -0.01 4.03 16 18 N -0.59 -14.39 3.13 -162.57 -0.51 -14.90 16 19 C -0.24 -6.38 9.76 -15.06 -0.15 -6.53 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C 0.00 -0.02 5.47 -17.44 -0.10 -0.12 16 22 N -0.92 -26.43 10.53 55.49 0.58 -25.84 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 S 0.19 1.94 22.31 -107.50 -2.40 -0.46 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.45 6.02 -51.93 -0.31 1.14 16 36 H 0.39 5.03 7.52 -40.82 -0.31 4.72 16 37 H 0.07 1.51 7.92 -51.93 -0.41 1.10 16 38 H 0.07 1.50 8.08 -51.93 -0.42 1.08 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.06 7.81 -51.93 -0.41 0.65 16 41 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 44 H 0.07 1.97 6.85 -51.93 -0.36 1.62 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -32.64 383.00 -9.24 -41.88 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.83 Total: 1.92 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -0.13 Total: 6.04 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.33 Total: -58.21 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.30 Total: -13.87 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.40 Total: -0.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.64 -9.24 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028286964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.029 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds