Wall clock time and date at job start Tue Mar 31 2020 22:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00008 * 2 1 4 4 C 1.50700 * 109.47174 * 179.97438 * 3 2 1 5 5 N 1.29427 * 124.80809 * 89.97603 * 4 3 2 6 6 C 1.30941 * 117.36672 * 179.72940 * 5 4 3 7 7 C 1.50701 * 122.90645 * 180.34405 * 6 5 4 8 8 C 1.35664 * 114.19025 * 0.52707 * 6 5 4 9 9 C 1.46676 * 126.13222 * 179.79233 * 8 6 5 10 10 O 1.21689 * 120.00043 * 359.70131 * 9 8 6 11 11 N 1.34777 * 120.00245 * 179.71486 * 9 8 6 12 12 C 1.46503 * 120.00011 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46708 * 185.08684 * 12 11 9 14 14 H 1.09004 * 109.87593 * 303.54812 * 13 12 11 15 15 C 1.54324 * 109.88817 * 64.57111 * 13 12 11 16 16 C 1.55159 * 102.94521 * 141.60553 * 15 13 12 17 17 C 1.54912 * 101.58141 * 324.50131 * 16 15 13 18 18 N 1.47031 * 109.87946 * 182.37892 * 13 12 11 19 19 C 1.36934 * 125.64805 * 61.60594 * 18 13 12 20 20 H 1.08000 * 120.00270 * 13.60042 * 19 18 13 21 21 C 1.38808 * 119.99628 * 193.60384 * 19 18 13 22 22 N 1.31611 * 120.00376 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99751 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47403 * 59.99746 * 23 21 19 25 25 H 1.48497 * 109.47373 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47374 * 299.99906 * 23 21 19 27 27 S 1.70958 * 124.80309 * 269.99686 * 4 3 2 28 28 H 1.08993 * 109.46714 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46979 * 300.00415 * 1 2 3 30 30 H 1.08996 * 109.46729 * 60.00527 * 1 2 3 31 31 H 1.09002 * 109.47191 * 59.99554 * 3 2 1 32 32 H 1.09001 * 109.47239 * 300.00033 * 3 2 1 33 33 H 1.08992 * 109.47291 * 270.19133 * 7 6 5 34 34 H 1.08999 * 109.46910 * 30.19334 * 7 6 5 35 35 H 1.08996 * 109.46751 * 150.19068 * 7 6 5 36 36 H 0.96998 * 119.99798 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47231 * 65.08215 * 12 11 9 38 38 H 1.08997 * 109.46653 * 305.08193 * 12 11 9 39 39 H 1.08995 * 110.72073 * 259.97321 * 15 13 12 40 40 H 1.09002 * 110.71713 * 23.24396 * 15 13 12 41 41 H 1.09008 * 110.99633 * 82.57346 * 16 15 13 42 42 H 1.08991 * 111.00234 * 206.42287 * 16 15 13 43 43 H 1.08999 * 110.36407 * 278.16979 * 17 16 15 44 44 H 1.09004 * 110.36349 * 155.84496 * 17 16 15 45 45 H 0.97002 * 120.00528 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2495 1.1275 -1.0617 6 6 5.5442 1.0306 -0.8916 7 6 6.5178 0.9611 -2.0397 8 6 5.9329 0.9941 0.4076 9 6 7.3120 0.8848 0.8950 10 8 8.2332 0.8116 0.1031 11 7 7.5591 0.8650 2.2197 12 6 8.9365 0.7552 2.7065 13 6 8.9300 0.6274 4.2311 14 1 8.4051 1.4750 4.6718 15 6 8.2401 -0.6897 4.6445 16 6 9.0980 -1.1695 5.8450 17 6 10.5159 -0.7181 5.4141 18 7 10.3104 0.5737 4.7342 19 6 11.2499 1.5601 4.5940 20 1 10.9517 2.5491 4.2788 21 6 12.5856 1.2887 4.8568 22 7 12.9490 0.0836 5.2413 23 14 13.8673 2.6340 4.6648 24 1 13.5437 3.7600 5.5773 25 1 15.2079 2.0925 5.0036 26 1 13.8692 3.1192 3.2613 27 16 4.4847 1.1098 1.4048 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 6.6736 -0.0802 -2.3215 34 1 6.1162 1.5116 -2.8905 35 1 7.4678 1.4018 -1.7375 36 1 6.8249 0.9235 2.8509 37 1 9.4956 1.6456 2.4188 38 1 9.4069 -0.1259 2.2700 39 1 7.2116 -0.5055 4.9546 40 1 8.2749 -1.4149 3.8314 41 1 8.7930 -0.6729 6.7662 42 1 9.0486 -2.2530 5.9522 43 1 10.9523 -1.4432 4.7271 44 1 11.1549 -0.5897 6.2878 45 1 13.8825 -0.1062 5.4246 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028286964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:41 Heat of formation + Delta-G solvation = -34.102231 kcal Electronic energy + Delta-G solvation = -26743.737142 eV Core-core repulsion = 22888.101444 eV Total energy + Delta-G solvation = -3855.635698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57241 -40.47600 -39.26013 -38.75452 -35.90015 -34.42814 -33.55864 -31.56450 -30.84142 -29.82504 -29.06442 -26.97280 -26.71601 -25.62470 -23.86881 -22.83144 -21.98444 -21.38132 -20.57055 -19.22685 -18.79205 -18.01863 -17.64046 -17.34826 -16.84665 -16.66848 -16.52441 -16.36764 -15.83171 -15.68467 -15.53053 -14.98873 -14.83073 -14.59174 -14.00616 -13.91991 -13.65864 -13.58435 -13.45866 -13.31321 -13.26461 -13.00900 -12.87262 -12.65966 -12.46272 -12.34551 -12.06459 -11.86805 -11.75711 -11.49400 -11.41842 -11.30693 -10.89002 -10.75730 -10.69314 -10.67771 -10.21600 -9.89668 -8.87925 -7.88118 -5.25989 -0.99128 0.00782 0.39590 1.19439 1.44524 1.47837 1.53357 1.93424 1.97481 2.48946 2.57858 3.19553 3.30878 3.59460 3.72619 3.75742 3.89946 3.95774 4.01804 4.17100 4.24964 4.33676 4.42429 4.52751 4.54747 4.60721 4.61914 4.65837 4.70893 4.81524 4.92120 4.92536 4.97828 5.09938 5.14202 5.23956 5.31465 5.46444 5.52895 5.66604 5.78263 6.05049 6.22063 6.31548 6.47996 7.00777 7.08687 7.75546 8.41088 9.22154 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.002498 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.514799 B =11206.446919 C =12169.920109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.135 3.865 4 C 0.049 3.951 5 N -0.481 5.481 6 C 0.139 3.861 7 C -0.087 4.087 8 C -0.320 4.320 9 C 0.590 3.410 10 O -0.560 6.560 11 N -0.702 5.702 12 C 0.130 3.870 13 C 0.147 3.853 14 H 0.054 0.946 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.172 3.828 18 N -0.609 5.609 19 C -0.241 4.241 20 H 0.078 0.922 21 C -0.060 4.060 22 N -0.945 5.945 23 Si 0.972 3.028 24 H -0.273 1.273 25 H -0.294 1.294 26 H -0.282 1.282 27 S 0.256 5.744 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.409 0.591 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.082 0.918 43 H -0.009 1.009 44 H 0.039 0.961 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.560 1.550 -6.746 29.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.055 3.945 4 C -0.226 4.226 5 N -0.198 5.198 6 C -0.001 4.001 7 C -0.146 4.146 8 C -0.444 4.444 9 C 0.376 3.624 10 O -0.441 6.441 11 N -0.353 5.353 12 C 0.004 3.996 13 C 0.040 3.960 14 H 0.072 0.928 15 C -0.154 4.154 16 C -0.171 4.171 17 C 0.047 3.953 18 N -0.334 5.334 19 C -0.370 4.370 20 H 0.096 0.904 21 C -0.254 4.254 22 N -0.593 5.593 23 Si 0.800 3.200 24 H -0.199 1.199 25 H -0.220 1.220 26 H -0.209 1.209 27 S 0.514 5.486 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.246 0.754 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.123 0.877 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.009 0.991 44 H 0.058 0.942 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -28.087 1.394 -6.588 28.883 hybrid contribution 1.649 0.624 -0.792 1.933 sum -26.438 2.017 -7.379 27.522 Atomic orbital electron populations 1.23025 0.77870 1.04316 1.01789 1.87922 1.22578 1.26717 1.95842 1.21093 0.82073 0.86379 1.04917 1.27510 1.02051 1.01307 0.91755 1.66089 1.04188 1.17095 1.32456 1.20823 0.90288 0.94870 0.94088 1.20619 0.96359 1.03772 0.93869 1.25499 0.98560 1.21893 0.98478 1.16990 0.86396 0.76333 0.82683 1.90787 1.45836 1.51658 1.55782 1.45742 1.09980 1.73784 1.05842 1.21810 0.80924 1.00049 0.96830 1.21346 0.86841 0.98146 0.89677 0.92820 1.22626 0.99587 0.95203 0.97937 1.22870 0.95294 1.00928 0.97998 1.21301 0.93803 0.85449 0.94711 1.44736 1.08712 1.16622 1.63291 1.19272 0.87215 0.90755 1.39740 0.90412 1.25672 0.98940 0.98717 1.02027 1.70128 1.15881 1.20847 1.52455 0.85257 0.78164 0.78586 0.77973 1.19894 1.22017 1.20857 1.83436 0.93515 1.62856 1.08795 0.88534 0.91742 0.92566 0.87309 0.88663 0.89890 0.89243 0.89851 0.75418 0.94043 0.93909 0.87710 0.91774 0.90945 0.89941 0.99115 0.94220 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -6.24 10.69 -148.98 -1.59 -7.83 16 3 C 0.13 1.63 6.51 71.24 0.46 2.10 16 4 C 0.05 0.93 7.02 88.46 0.62 1.55 16 5 N -0.48 -11.83 10.50 -178.28 -1.87 -13.70 16 6 C 0.14 3.73 6.79 42.10 0.29 4.02 16 7 C -0.09 -2.24 9.69 71.24 0.69 -1.55 16 8 C -0.32 -8.53 6.48 23.88 0.15 -8.37 16 9 C 0.59 19.28 7.78 86.45 0.67 19.95 16 10 O -0.56 -22.57 14.27 -4.31 -0.06 -22.63 16 11 N -0.70 -21.01 5.32 -467.09 -2.49 -23.50 16 12 C 0.13 5.01 5.07 86.38 0.44 5.44 16 13 C 0.15 5.57 3.22 45.34 0.15 5.71 16 14 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 15 C -0.12 -3.48 6.10 31.78 0.19 -3.28 16 16 C -0.13 -4.51 7.09 31.99 0.23 -4.28 16 17 C 0.17 8.32 5.43 86.86 0.47 8.79 16 18 N -0.61 -30.28 3.13 -668.24 -2.09 -32.37 16 19 C -0.24 -13.32 9.76 84.03 0.82 -12.50 16 20 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 21 C -0.06 -3.41 5.47 84.86 0.46 -2.94 16 22 N -0.95 -56.90 10.53 21.65 0.23 -56.67 16 23 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 27 S 0.26 4.51 22.31 -56.49 -1.26 3.25 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.48 6.02 -2.39 -0.01 2.46 16 36 H 0.41 9.36 7.52 -92.71 -0.70 8.66 16 37 H 0.04 1.83 7.92 -2.39 -0.02 1.81 16 38 H 0.04 1.88 8.08 -2.39 -0.02 1.86 16 39 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 1.96 7.81 -2.39 -0.02 1.94 16 41 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 42 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 43 H -0.01 -0.50 8.08 -2.39 -0.02 -0.52 16 44 H 0.04 2.16 6.85 -2.39 -0.02 2.15 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -75.21 383.00 0.10 -75.11 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.31 Total: 13.97 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 6.90 Total: 16.06 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -6.22 Total: -126.24 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -1.65 Total: -30.46 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.26 Total: 3.25 kcal Total: -75.21 0.10 -75.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028286964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.008 kcal (2) G-P(sol) polarization free energy of solvation -75.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds