Wall clock time and date at job start Tue Mar 31 2020 22:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99584 * 2 1 4 4 C 1.50699 * 109.46916 * 179.97438 * 3 2 1 5 5 N 1.29430 * 124.80488 * 89.96075 * 4 3 2 6 6 C 1.30946 * 117.36207 * 179.76936 * 5 4 3 7 7 C 1.50707 * 122.90427 * 180.30432 * 6 5 4 8 8 C 1.35659 * 114.19191 * 0.47599 * 6 5 4 9 9 C 1.46681 * 126.13007 * 179.82582 * 8 6 5 10 10 O 1.21690 * 120.00095 * 359.71477 * 9 8 6 11 11 N 1.34773 * 120.00117 * 179.71341 * 9 8 6 12 12 C 1.46504 * 120.00257 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47171 * 180.02562 * 12 11 9 14 14 H 1.09004 * 110.91254 * 57.45208 * 13 12 11 15 15 C 1.55164 * 111.00283 * 181.35255 * 13 12 11 16 16 C 1.54322 * 102.93965 * 153.57810 * 15 13 12 17 17 N 1.47020 * 107.27467 * 337.80777 * 16 15 13 18 18 C 1.36939 * 125.65087 * 179.20508 * 17 16 15 19 19 H 1.07997 * 119.99591 * 174.35340 * 18 17 16 20 20 C 1.38813 * 119.99732 * 354.35924 * 18 17 16 21 21 N 1.31615 * 120.00275 * 7.02877 * 20 18 17 22 22 Si 1.86799 * 119.99623 * 187.02776 * 20 18 17 23 23 H 1.48500 * 109.47076 * 94.98809 * 22 20 18 24 24 H 1.48498 * 109.46809 * 214.98525 * 22 20 18 25 25 H 1.48499 * 109.47087 * 334.98434 * 22 20 18 26 26 C 1.47429 * 108.70230 * 358.93934 * 17 16 15 27 27 S 1.70950 * 124.80547 * 269.99782 * 4 3 2 28 28 H 1.08993 * 109.47143 * 60.00470 * 1 2 3 29 29 H 1.09003 * 109.46700 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47145 * 300.00199 * 1 2 3 31 31 H 1.08995 * 109.47722 * 59.99783 * 3 2 1 32 32 H 1.08998 * 109.47095 * 299.99639 * 3 2 1 33 33 H 1.09001 * 109.46955 * 270.19370 * 7 6 5 34 34 H 1.09003 * 109.46926 * 30.18496 * 7 6 5 35 35 H 1.08998 * 109.47119 * 150.18877 * 7 6 5 36 36 H 0.96996 * 120.00262 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.46528 * 60.00507 * 12 11 9 38 38 H 1.08999 * 109.47234 * 300.00544 * 12 11 9 39 39 H 1.08996 * 110.71724 * 271.94416 * 15 13 12 40 40 H 1.08993 * 110.71742 * 35.04068 * 15 13 12 41 41 H 1.09000 * 109.88266 * 218.38951 * 16 15 13 42 42 H 1.09003 * 109.88108 * 97.22299 * 16 15 13 43 43 H 0.96992 * 120.00186 * 180.02562 * 21 20 18 44 44 H 1.09002 * 110.36346 * 142.96798 * 26 17 16 45 45 H 1.08999 * 110.37028 * 265.18056 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2493 1.1273 -1.0618 6 6 5.5440 1.0297 -0.8916 7 6 6.5176 0.9589 -2.0398 8 6 5.9328 0.9939 0.4075 9 6 7.3120 0.8847 0.8949 10 8 8.2331 0.8113 0.1030 11 7 7.5591 0.8658 2.2196 12 6 8.9366 0.7561 2.7064 13 6 8.9383 0.7562 4.2363 14 1 8.3246 -0.0559 4.6262 15 6 10.3853 0.6753 4.7908 16 6 10.2644 1.3526 6.1722 17 7 9.0737 2.2141 6.1333 18 6 8.6076 2.9787 7.1693 19 1 7.7753 3.6491 7.0138 20 6 9.2050 2.8921 8.4193 21 7 10.3025 2.1828 8.5765 22 14 8.4512 3.7823 9.8784 23 1 7.5707 2.8493 10.6264 24 1 9.5317 4.2683 10.7737 25 1 7.6522 4.9368 9.3949 26 6 8.4683 2.1236 4.7921 27 16 4.4846 1.1098 1.4047 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 6.6726 -0.0827 -2.3211 34 1 6.1162 1.5091 -2.8909 35 1 7.4679 1.3992 -1.7380 36 1 6.8249 0.9240 2.8508 37 1 9.5190 1.6024 2.3419 38 1 9.3776 -0.1720 2.3429 39 1 10.7003 -0.3628 4.8964 40 1 11.0753 1.2229 4.1489 41 1 11.1514 1.9548 6.3687 42 1 10.1487 0.5952 6.9475 43 1 10.7197 2.1219 9.4500 44 1 7.3810 2.1504 4.8641 45 1 8.8259 2.9356 4.1588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028955198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:48 Heat of formation + Delta-G solvation = -11.745389 kcal Electronic energy + Delta-G solvation = -26402.322406 eV Core-core repulsion = 22547.656174 eV Total energy + Delta-G solvation = -3854.666233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.62959 -39.41734 -38.24806 -37.62973 -34.78234 -32.77675 -32.52568 -30.10998 -29.18053 -28.92213 -27.80226 -26.51366 -25.52475 -23.74222 -23.11804 -21.74725 -20.33290 -20.00058 -19.33598 -18.36429 -17.26852 -17.09085 -16.77351 -16.28363 -15.92245 -15.80005 -15.46214 -14.93963 -14.66833 -14.39645 -14.14242 -13.96467 -13.57782 -13.26410 -13.09332 -12.85409 -12.71996 -12.56248 -12.37086 -12.05898 -11.90666 -11.76800 -11.58970 -11.41875 -10.92805 -10.83210 -10.50196 -10.37986 -10.20552 -10.13981 -10.03252 -9.91886 -9.81446 -9.79665 -9.70374 -9.19503 -8.98625 -8.60128 -6.85853 -5.75180 -3.07723 -0.12173 0.83402 1.26005 2.09418 2.98748 3.01359 3.22515 3.37910 3.43034 3.45315 3.83008 4.38025 4.46661 4.62305 4.71153 4.77722 4.85861 4.87125 4.93065 5.07249 5.18838 5.21584 5.38252 5.49255 5.50159 5.54866 5.63776 5.67682 5.84178 5.97554 6.01196 6.12463 6.30048 6.33538 6.45615 6.49197 6.50000 6.63291 6.86410 7.25580 7.39301 7.52865 7.61365 7.80046 8.02204 8.23267 9.19058 9.79643 10.46031 11.37005 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.002503 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.913773 B =11183.605761 C =12964.483728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.138 3.862 4 C 0.050 3.950 5 N -0.459 5.459 6 C 0.145 3.855 7 C -0.089 4.089 8 C -0.292 4.292 9 C 0.595 3.405 10 O -0.524 6.524 11 N -0.717 5.717 12 C 0.133 3.867 13 C -0.119 4.119 14 H 0.081 0.919 15 C -0.134 4.134 16 C 0.176 3.824 17 N -0.606 5.606 18 C -0.231 4.231 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.141 3.859 27 S 0.197 5.803 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.399 0.601 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.049 0.951 43 H 0.252 0.748 44 H 0.035 0.965 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.853 -4.195 -18.497 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.058 3.942 4 C -0.225 4.225 5 N -0.176 5.176 6 C 0.007 3.993 7 C -0.147 4.147 8 C -0.416 4.416 9 C 0.380 3.620 10 O -0.403 6.403 11 N -0.368 5.368 12 C 0.010 3.990 13 C -0.139 4.139 14 H 0.099 0.901 15 C -0.173 4.173 16 C 0.051 3.949 17 N -0.332 5.332 18 C -0.359 4.359 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.015 3.985 27 S 0.455 5.545 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.234 0.766 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -15.532 -4.328 -18.178 24.299 hybrid contribution -0.468 0.641 0.531 0.955 sum -16.000 -3.687 -17.647 24.104 Atomic orbital electron populations 1.22827 0.79731 1.03477 1.00464 1.87967 1.20520 1.26039 1.95555 1.20841 0.84195 0.86305 1.02882 1.26816 1.00539 1.03330 0.91831 1.66030 1.04535 1.15656 1.31344 1.20669 0.89710 0.95185 0.93782 1.20672 0.97091 1.03596 0.93387 1.25655 0.98439 1.20135 0.97420 1.16626 0.85736 0.76918 0.82704 1.90784 1.44234 1.50363 1.54905 1.45991 1.10682 1.74166 1.05949 1.21487 0.81127 1.02258 0.94101 1.22635 0.99422 1.00106 0.91753 0.90105 1.22852 0.94084 1.00625 0.99699 1.21165 0.90055 0.93123 0.90522 1.44481 1.28475 1.52285 1.07976 1.19048 1.12710 1.16629 0.87489 0.90472 1.24828 0.97655 1.00250 0.97603 1.69972 1.19405 1.44762 1.22520 0.86124 0.78201 0.78850 0.82762 1.21599 1.21755 1.20634 1.21574 0.96070 0.92856 0.88003 1.83984 0.96276 1.63881 1.10358 0.93517 0.88999 0.93497 0.90419 0.89692 0.90038 0.90743 0.87999 0.76605 0.90896 0.91199 0.91894 0.92127 0.94065 0.93310 0.93718 0.94690 0.96304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.44 10.69 -35.23 -0.38 -3.81 16 3 C 0.14 1.06 6.51 36.01 0.23 1.30 16 4 C 0.05 0.53 7.01 -13.29 -0.09 0.44 16 5 N -0.46 -5.69 10.50 -7.70 -0.08 -5.77 16 6 C 0.15 1.84 6.79 -83.89 -0.57 1.27 16 7 C -0.09 -0.98 9.69 36.01 0.35 -0.63 16 8 C -0.29 -3.70 6.48 -37.10 -0.24 -3.94 16 9 C 0.60 8.40 7.78 -12.85 -0.10 8.30 16 10 O -0.52 -8.51 14.27 5.20 0.07 -8.44 16 11 N -0.72 -9.49 5.40 -61.62 -0.33 -9.82 16 12 C 0.13 1.88 5.12 -4.04 -0.02 1.86 16 13 C -0.12 -1.94 3.10 -88.47 -0.27 -2.21 16 14 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 15 C -0.13 -2.38 6.42 -24.89 -0.16 -2.54 16 16 C 0.18 4.19 5.38 -3.07 -0.02 4.17 16 17 N -0.61 -15.17 3.39 -170.07 -0.58 -15.75 16 18 C -0.23 -6.34 10.26 -15.06 -0.15 -6.50 16 19 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 20 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 21 N -0.92 -26.80 10.36 55.49 0.57 -26.22 16 22 Si 0.91 21.83 29.56 -169.99 -5.02 16.81 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.14 2.78 6.41 -2.53 -0.02 2.77 16 27 S 0.20 2.01 22.31 -107.50 -2.40 -0.39 16 28 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.24 6.01 -51.93 -0.31 0.93 16 36 H 0.40 4.79 7.52 -40.82 -0.31 4.48 16 37 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 41 H 0.04 1.09 7.62 -51.93 -0.40 0.69 16 42 H 0.05 1.28 7.29 -51.93 -0.38 0.90 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.02 0.38 8.01 -51.93 -0.42 -0.03 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -33.20 383.56 -9.25 -42.45 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.84 Total: -0.10 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.05 Total: 5.26 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.42 Total: -57.56 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.30 Total: -12.25 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.40 Total: -0.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.20 -9.25 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028955198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.703 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds