Wall clock time and date at job start Tue Mar 31 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00205 * 2 1 4 4 C 1.50700 * 109.47074 * 179.97438 * 3 2 1 5 5 N 1.29435 * 124.80212 * 89.98016 * 4 3 2 6 6 C 1.30942 * 117.36736 * 180.02562 * 5 4 3 7 7 C 1.50692 * 122.90798 * 179.97438 * 6 5 4 8 8 C 1.35670 * 114.18611 * 0.26760 * 6 5 4 9 9 C 1.46683 * 126.12532 * 179.73357 * 8 6 5 10 10 O 1.21680 * 120.00349 * 359.97438 * 9 8 6 11 11 N 1.34785 * 119.99615 * 179.97438 * 9 8 6 12 12 C 1.46499 * 119.99458 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46397 * 179.97438 * 12 11 9 14 14 H 1.08995 * 110.64217 * 305.69839 * 13 12 11 15 15 C 1.55164 * 110.71780 * 182.55781 * 13 12 11 16 16 C 1.54904 * 101.58376 * 206.13601 * 15 13 12 17 17 N 1.47430 * 104.83210 * 37.00879 * 16 15 13 18 18 C 1.36934 * 125.64831 * 155.90594 * 17 16 15 19 19 H 1.08004 * 119.99703 * 342.04756 * 18 17 16 20 20 C 1.38812 * 120.00087 * 162.05851 * 18 17 16 21 21 N 1.31613 * 120.00072 * 156.24581 * 20 18 17 22 22 Si 1.86797 * 119.99772 * 336.23548 * 20 18 17 23 23 H 1.48507 * 109.47042 * 84.67514 * 22 20 18 24 24 H 1.48499 * 109.47337 * 204.67362 * 22 20 18 25 25 H 1.48500 * 109.47640 * 324.67755 * 22 20 18 26 26 C 1.47316 * 108.73692 * 335.71857 * 17 16 15 27 27 S 1.70949 * 124.80740 * 270.00102 * 4 3 2 28 28 H 1.09000 * 109.46612 * 60.00005 * 1 2 3 29 29 H 1.08997 * 109.46914 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46993 * 300.00181 * 1 2 3 31 31 H 1.08999 * 109.46636 * 60.00114 * 3 2 1 32 32 H 1.08991 * 109.46940 * 299.99913 * 3 2 1 33 33 H 1.08999 * 109.47210 * 90.02112 * 7 6 5 34 34 H 1.09002 * 109.47359 * 210.02451 * 7 6 5 35 35 H 1.09002 * 109.47092 * 330.02117 * 7 6 5 36 36 H 0.96997 * 119.99657 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47053 * 299.99633 * 12 11 9 38 38 H 1.09000 * 109.47433 * 60.00786 * 12 11 9 39 39 H 1.09002 * 111.00207 * 324.21355 * 15 13 12 40 40 H 1.09000 * 111.00076 * 88.02203 * 15 13 12 41 41 H 1.08997 * 110.37005 * 155.84569 * 16 15 13 42 42 H 1.08997 * 110.36667 * 278.06458 * 16 15 13 43 43 H 0.97006 * 120.00389 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.06625 * 241.87074 * 26 17 16 45 45 H 1.09000 * 109.85391 * 120.60558 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2494 1.1274 -1.0619 6 6 5.5437 1.0244 -0.8919 7 6 6.5165 0.9461 -2.0400 8 6 5.9325 0.9880 0.4074 9 6 7.3111 0.8714 0.8945 10 8 8.2320 0.7964 0.1027 11 7 7.5579 0.8472 2.2194 12 6 8.9348 0.7302 2.7059 13 6 8.9363 0.7268 4.2359 14 1 8.4132 1.6013 4.6226 15 6 10.3871 0.6684 4.7833 16 6 10.1713 0.0049 6.1663 17 7 9.1029 -0.9869 5.9464 18 6 8.8854 -2.1068 6.7039 19 1 9.6671 -2.4842 7.3466 20 6 7.6604 -2.7570 6.6456 21 7 7.5755 -4.0306 6.9665 22 14 6.1324 -1.8243 6.1120 23 1 6.0477 -1.8199 4.6294 24 1 4.9274 -2.4850 6.6747 25 1 6.2074 -0.4264 6.6076 26 6 8.3048 -0.5721 4.7797 27 16 4.4848 1.1095 1.4047 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6887 1.8462 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 6.8330 1.9516 -2.3173 34 1 7.3861 0.3612 -1.7403 35 1 6.0342 0.4688 -2.8931 36 1 6.8238 0.9073 2.8506 37 1 9.3718 -0.1987 2.3397 38 1 9.5210 1.5750 2.3443 39 1 11.0199 0.0494 4.1473 40 1 10.8047 1.6695 4.8904 41 1 11.0850 -0.4888 6.4969 42 1 9.8562 0.7482 6.8986 43 1 6.7193 -4.4850 6.9261 44 1 7.2735 -0.3857 5.0793 45 1 8.3364 -1.3481 4.0149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028955199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:51 Heat of formation + Delta-G solvation = -3.254726 kcal Electronic energy + Delta-G solvation = -26956.813910 eV Core-core repulsion = 23102.515860 eV Total energy + Delta-G solvation = -3854.298050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63037 -39.46878 -38.25903 -37.92406 -34.85808 -32.77279 -32.57784 -30.67743 -29.17327 -29.10726 -28.15855 -26.48057 -25.68598 -23.79341 -23.10998 -21.80806 -20.55699 -20.32623 -19.44961 -18.35868 -17.28759 -17.06722 -16.87645 -16.37451 -16.17329 -15.90398 -15.52040 -15.35383 -14.70365 -14.40453 -14.14477 -13.92358 -13.56004 -13.31902 -13.25162 -12.83802 -12.82814 -12.70165 -12.55732 -12.49163 -12.01573 -11.86182 -11.62722 -11.56726 -11.33572 -10.99654 -10.75022 -10.61072 -10.38521 -10.27096 -10.15911 -9.92114 -9.89039 -9.80033 -9.38239 -9.20776 -9.00580 -8.65466 -7.09817 -5.97446 -3.25838 -0.11493 0.84513 1.27075 2.10180 2.92658 3.03525 3.24800 3.29326 3.40641 3.46190 3.84827 4.39714 4.51413 4.58231 4.72661 4.75620 4.80256 4.90030 4.90705 4.96263 4.98233 5.01697 5.20675 5.27280 5.41275 5.49522 5.56365 5.57584 5.68146 5.74808 5.81335 5.97220 6.02950 6.12346 6.22517 6.29280 6.40907 6.53922 6.55507 6.69012 6.75303 7.23554 7.36829 7.68013 7.98971 8.28886 8.80783 9.66548 10.15133 11.19141 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.003492 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.746619 B = 8016.003097 C = 9965.546408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.138 3.862 4 C 0.053 3.947 5 N -0.459 5.459 6 C 0.147 3.853 7 C -0.089 4.089 8 C -0.293 4.293 9 C 0.598 3.402 10 O -0.522 6.522 11 N -0.720 5.720 12 C 0.133 3.867 13 C -0.118 4.118 14 H 0.081 0.919 15 C -0.120 4.120 16 C 0.132 3.868 17 N -0.610 5.610 18 C -0.243 4.243 19 H 0.094 0.906 20 C 0.022 3.978 21 N -0.905 5.905 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.280 1.280 26 C 0.123 3.877 27 S 0.192 5.808 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.399 0.601 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.023 0.977 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 15.525 -14.835 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.058 3.942 4 C -0.223 4.223 5 N -0.175 5.175 6 C 0.009 3.991 7 C -0.148 4.148 8 C -0.417 4.417 9 C 0.383 3.617 10 O -0.400 6.400 11 N -0.371 5.371 12 C 0.010 3.990 13 C -0.137 4.137 14 H 0.099 0.901 15 C -0.159 4.159 16 C 0.007 3.993 17 N -0.337 5.337 18 C -0.370 4.370 19 H 0.111 0.889 20 C -0.177 4.177 21 N -0.549 5.549 22 Si 0.714 3.286 23 H -0.213 1.213 24 H -0.231 1.231 25 H -0.207 1.207 26 C -0.001 4.001 27 S 0.450 5.550 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.233 0.767 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.652 15.102 -14.666 23.159 hybrid contribution -1.245 0.591 -0.480 1.459 sum -10.897 15.693 -15.146 24.381 Atomic orbital electron populations 1.22832 0.79697 1.03575 1.00376 1.87991 1.20549 1.25892 1.95530 1.20833 0.84145 0.86434 1.02792 1.26830 1.00562 1.03168 0.91701 1.66032 1.04534 1.15679 1.31264 1.20670 0.89744 0.95020 0.93714 1.20678 0.96808 1.03863 0.93424 1.25628 0.98370 1.20326 0.97426 1.16596 0.85807 0.76763 0.82561 1.90777 1.44134 1.50337 1.54798 1.45982 1.10605 1.74392 1.06138 1.21509 0.81355 1.02743 0.93401 1.22484 0.98778 0.99472 0.92995 0.90109 1.22728 0.94443 1.00545 0.98197 1.21614 0.92678 0.91316 0.93698 1.44854 1.33501 1.25168 1.30142 1.18675 0.98322 0.98744 1.21286 0.88881 1.24950 0.97439 0.95720 0.99580 1.69854 1.25250 1.07771 1.52023 0.86949 0.84107 0.79761 0.77740 1.21271 1.23092 1.20669 1.21772 0.94311 0.93404 0.90661 1.84044 0.96551 1.63850 1.10572 0.93530 0.88923 0.93521 0.90500 0.89659 0.90038 0.87941 0.90653 0.76719 0.90449 0.90818 0.90784 0.91143 0.93074 0.95750 0.92693 0.95962 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.97 10.69 -35.23 -0.38 -4.35 16 3 C 0.14 1.20 6.51 36.01 0.23 1.43 16 4 C 0.05 0.62 7.02 -13.29 -0.09 0.52 16 5 N -0.46 -6.09 10.50 -7.70 -0.08 -6.18 16 6 C 0.15 1.99 6.79 -83.89 -0.57 1.42 16 7 C -0.09 -1.04 9.70 36.00 0.35 -0.69 16 8 C -0.29 -4.07 6.48 -37.09 -0.24 -4.31 16 9 C 0.60 9.03 7.78 -12.85 -0.10 8.93 16 10 O -0.52 -8.77 14.26 5.21 0.07 -8.69 16 11 N -0.72 -10.37 5.43 -61.62 -0.33 -10.71 16 12 C 0.13 1.90 5.00 -4.04 -0.02 1.88 16 13 C -0.12 -1.84 2.98 -88.78 -0.26 -2.10 16 14 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.12 -1.78 6.54 -24.58 -0.16 -1.94 16 16 C 0.13 2.50 7.23 -2.53 -0.02 2.48 16 17 N -0.61 -14.58 3.22 -169.83 -0.55 -15.12 16 18 C -0.24 -6.90 10.56 -15.06 -0.16 -7.06 16 19 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 20 C 0.02 0.64 5.43 -17.43 -0.09 0.54 16 21 N -0.91 -28.05 13.97 55.49 0.78 -27.27 16 22 Si 0.88 22.50 24.38 -169.99 -4.15 18.36 16 23 H -0.29 -6.98 6.84 56.52 0.39 -6.59 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.28 -6.94 6.87 56.52 0.39 -6.55 16 26 C 0.12 2.61 4.55 -2.90 -0.01 2.59 16 27 S 0.19 2.27 22.31 -107.50 -2.40 -0.13 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.33 5.99 -51.93 -0.31 1.02 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 5.45 7.59 -40.82 -0.31 5.14 16 37 H 0.08 1.20 8.01 -51.93 -0.42 0.79 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.07 8.05 -51.93 -0.42 0.66 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.02 0.51 3.55 -51.93 -0.18 0.33 16 45 H 0.04 0.98 7.73 -51.93 -0.40 0.58 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -34.64 378.12 -8.07 -42.72 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.70 Total: 0.66 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -0.04 Total: 5.02 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.19 Total: -59.28 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.30 Total: -13.04 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.15 Total: 18.36 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.40 Total: -0.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.64 -8.07 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028955199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.460 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds