Wall clock time and date at job start Tue Mar 31 2020 22:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00205 * 2 1 4 4 C 1.50700 * 109.47074 * 179.97438 * 3 2 1 5 5 N 1.29435 * 124.80212 * 89.98016 * 4 3 2 6 6 C 1.30942 * 117.36736 * 180.02562 * 5 4 3 7 7 C 1.50692 * 122.90798 * 179.97438 * 6 5 4 8 8 C 1.35670 * 114.18611 * 0.26760 * 6 5 4 9 9 C 1.46683 * 126.12532 * 179.73357 * 8 6 5 10 10 O 1.21680 * 120.00349 * 359.97438 * 9 8 6 11 11 N 1.34785 * 119.99615 * 179.97438 * 9 8 6 12 12 C 1.46499 * 119.99458 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46397 * 179.97438 * 12 11 9 14 14 H 1.08995 * 110.64217 * 305.69839 * 13 12 11 15 15 C 1.55164 * 110.71780 * 182.55781 * 13 12 11 16 16 C 1.54904 * 101.58376 * 206.13601 * 15 13 12 17 17 N 1.47430 * 104.83210 * 37.00879 * 16 15 13 18 18 C 1.36934 * 125.64831 * 155.90594 * 17 16 15 19 19 H 1.08004 * 119.99703 * 342.04756 * 18 17 16 20 20 C 1.38812 * 120.00087 * 162.05851 * 18 17 16 21 21 N 1.31613 * 120.00072 * 156.24581 * 20 18 17 22 22 Si 1.86797 * 119.99772 * 336.23548 * 20 18 17 23 23 H 1.48507 * 109.47042 * 84.67514 * 22 20 18 24 24 H 1.48499 * 109.47337 * 204.67362 * 22 20 18 25 25 H 1.48500 * 109.47640 * 324.67755 * 22 20 18 26 26 C 1.47316 * 108.73692 * 335.71857 * 17 16 15 27 27 S 1.70949 * 124.80740 * 270.00102 * 4 3 2 28 28 H 1.09000 * 109.46612 * 60.00005 * 1 2 3 29 29 H 1.08997 * 109.46914 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46993 * 300.00181 * 1 2 3 31 31 H 1.08999 * 109.46636 * 60.00114 * 3 2 1 32 32 H 1.08991 * 109.46940 * 299.99913 * 3 2 1 33 33 H 1.08999 * 109.47210 * 90.02112 * 7 6 5 34 34 H 1.09002 * 109.47359 * 210.02451 * 7 6 5 35 35 H 1.09002 * 109.47092 * 330.02117 * 7 6 5 36 36 H 0.96997 * 119.99657 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47053 * 299.99633 * 12 11 9 38 38 H 1.09000 * 109.47433 * 60.00786 * 12 11 9 39 39 H 1.09002 * 111.00207 * 324.21355 * 15 13 12 40 40 H 1.09000 * 111.00076 * 88.02203 * 15 13 12 41 41 H 1.08997 * 110.37005 * 155.84569 * 16 15 13 42 42 H 1.08997 * 110.36667 * 278.06458 * 16 15 13 43 43 H 0.97006 * 120.00389 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.06625 * 241.87074 * 26 17 16 45 45 H 1.09000 * 109.85391 * 120.60558 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2494 1.1274 -1.0619 6 6 5.5437 1.0244 -0.8919 7 6 6.5165 0.9461 -2.0400 8 6 5.9325 0.9880 0.4074 9 6 7.3111 0.8714 0.8945 10 8 8.2320 0.7964 0.1027 11 7 7.5579 0.8472 2.2194 12 6 8.9348 0.7302 2.7059 13 6 8.9363 0.7268 4.2359 14 1 8.4132 1.6013 4.6226 15 6 10.3871 0.6684 4.7833 16 6 10.1713 0.0049 6.1663 17 7 9.1029 -0.9869 5.9464 18 6 8.8854 -2.1068 6.7039 19 1 9.6671 -2.4842 7.3466 20 6 7.6604 -2.7570 6.6456 21 7 7.5755 -4.0306 6.9665 22 14 6.1324 -1.8243 6.1120 23 1 6.0477 -1.8199 4.6294 24 1 4.9274 -2.4850 6.6747 25 1 6.2074 -0.4264 6.6076 26 6 8.3048 -0.5721 4.7797 27 16 4.4848 1.1095 1.4047 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6887 1.8462 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 6.8330 1.9516 -2.3173 34 1 7.3861 0.3612 -1.7403 35 1 6.0342 0.4688 -2.8931 36 1 6.8238 0.9073 2.8506 37 1 9.3718 -0.1987 2.3397 38 1 9.5210 1.5750 2.3443 39 1 11.0199 0.0494 4.1473 40 1 10.8047 1.6695 4.8904 41 1 11.0850 -0.4888 6.4969 42 1 9.8562 0.7482 6.8986 43 1 6.7193 -4.4850 6.9261 44 1 7.2735 -0.3857 5.0793 45 1 8.3364 -1.3481 4.0149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028955199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:50 Heat of formation + Delta-G solvation = -29.561305 kcal Electronic energy + Delta-G solvation = -26957.954649 eV Core-core repulsion = 23102.515860 eV Total energy + Delta-G solvation = -3855.438789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63164 -40.56818 -39.47193 -38.83172 -36.19107 -34.54177 -33.61832 -32.33943 -30.51670 -29.87426 -29.35696 -27.30201 -27.01553 -25.40869 -23.93528 -23.00074 -21.94922 -21.80474 -20.55556 -19.28740 -19.01730 -18.18749 -17.84050 -17.70781 -17.17635 -16.72377 -16.62760 -16.44059 -16.02711 -15.54315 -15.47980 -15.15847 -14.99367 -14.92433 -14.31696 -14.22567 -14.01046 -13.55963 -13.50591 -13.39437 -13.32898 -13.26872 -13.03146 -12.66413 -12.51194 -12.42362 -12.40516 -12.11184 -11.86048 -11.61370 -11.36326 -11.24219 -10.94020 -10.82792 -10.78117 -10.75591 -10.29631 -9.97444 -9.09376 -8.21209 -5.45425 -1.06131 -0.06426 0.33573 1.13213 1.24403 1.32929 1.44196 1.84862 1.95661 2.38564 2.52286 2.98815 3.13132 3.28104 3.54455 3.66533 3.68107 3.78255 3.83478 3.92288 4.11459 4.26557 4.33640 4.44960 4.47917 4.52989 4.55120 4.58707 4.62051 4.67049 4.74080 4.80350 4.84132 4.86006 5.01014 5.08567 5.10948 5.19846 5.29966 5.43368 5.66903 5.99252 6.07576 6.16707 6.39659 6.74342 6.87730 7.52229 8.08707 8.99108 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.003492 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.746619 B = 8016.003097 C = 9965.546408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.134 3.866 4 C 0.057 3.943 5 N -0.478 5.478 6 C 0.142 3.858 7 C -0.086 4.086 8 C -0.321 4.321 9 C 0.597 3.403 10 O -0.545 6.545 11 N -0.720 5.720 12 C 0.139 3.861 13 C -0.102 4.102 14 H 0.106 0.894 15 C -0.105 4.105 16 C 0.122 3.878 17 N -0.631 5.631 18 C -0.237 4.237 19 H 0.060 0.940 20 C -0.041 4.041 21 N -0.955 5.955 22 Si 0.947 3.053 23 H -0.273 1.273 24 H -0.309 1.309 25 H -0.264 1.264 26 C 0.117 3.883 27 S 0.214 5.786 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.402 0.598 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.262 0.738 44 H 0.015 0.985 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 18.668 -15.874 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.054 3.946 4 C -0.218 4.218 5 N -0.195 5.195 6 C 0.003 3.997 7 C -0.145 4.145 8 C -0.445 4.445 9 C 0.384 3.616 10 O -0.426 6.426 11 N -0.371 5.371 12 C 0.016 3.984 13 C -0.121 4.121 14 H 0.125 0.875 15 C -0.144 4.144 16 C -0.002 4.002 17 N -0.358 5.358 18 C -0.366 4.366 19 H 0.078 0.922 20 C -0.235 4.235 21 N -0.602 5.602 22 Si 0.776 3.224 23 H -0.199 1.199 24 H -0.238 1.238 25 H -0.190 1.190 26 C -0.008 4.008 27 S 0.472 5.528 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.237 0.763 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.823 18.299 -15.703 26.430 hybrid contribution -0.840 -0.421 -0.132 0.949 sum -11.662 17.878 -15.835 26.578 Atomic orbital electron populations 1.23026 0.77798 1.04275 1.01881 1.87931 1.22688 1.26857 1.95853 1.21111 0.82119 0.86362 1.04998 1.27477 1.01980 1.01081 0.91290 1.66108 1.04466 1.16934 1.32009 1.20956 0.90260 0.94357 0.94126 1.20663 0.96044 1.04413 0.93330 1.25573 0.98594 1.22199 0.98139 1.16741 0.86153 0.76240 0.82510 1.90760 1.45005 1.51486 1.55305 1.45977 1.10815 1.74175 1.06082 1.21449 0.81615 1.02994 0.92353 1.22420 0.98959 0.97112 0.93586 0.87547 1.22706 0.94071 1.02516 0.95062 1.21895 0.90890 0.90654 0.96799 1.45010 1.35056 1.25164 1.30528 1.18651 0.97409 1.00021 1.20484 0.92178 1.25632 1.00513 0.96319 1.01069 1.69991 1.25715 1.09456 1.55059 0.85917 0.79634 0.78811 0.77990 1.19940 1.23792 1.18963 1.21872 0.94126 0.95606 0.89152 1.83870 0.95382 1.63422 1.10093 0.92095 0.88734 0.91921 0.87629 0.88075 0.88814 0.89432 0.89637 0.76262 0.92147 0.88326 0.90656 0.86680 0.93574 0.94470 0.92954 0.96732 0.96264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.78 10.69 -148.98 -1.59 -9.37 16 3 C 0.13 1.97 6.51 71.24 0.46 2.44 16 4 C 0.06 1.22 7.02 88.46 0.62 1.84 16 5 N -0.48 -12.04 10.50 -178.29 -1.87 -13.91 16 6 C 0.14 3.71 6.79 42.09 0.29 4.00 16 7 C -0.09 -1.95 9.70 71.23 0.69 -1.26 16 8 C -0.32 -8.53 6.48 23.88 0.15 -8.37 16 9 C 0.60 17.34 7.78 86.45 0.67 18.01 16 10 O -0.55 -17.90 14.26 -4.29 -0.06 -17.96 16 11 N -0.72 -19.25 5.43 -467.08 -2.53 -21.78 16 12 C 0.14 3.59 5.00 86.38 0.43 4.02 16 13 C -0.10 -2.82 2.98 -9.60 -0.03 -2.85 16 14 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 15 C -0.11 -2.70 6.54 31.99 0.21 -2.50 16 16 C 0.12 4.36 7.23 86.85 0.63 4.98 16 17 N -0.63 -29.80 3.22 -691.23 -2.22 -32.02 16 18 C -0.24 -13.77 10.56 84.03 0.89 -12.88 16 19 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 20 C -0.04 -2.44 5.43 84.86 0.46 -1.98 16 21 N -0.96 -61.30 13.97 21.65 0.30 -61.00 16 22 Si 0.95 46.92 24.38 68.60 1.67 48.59 16 23 H -0.27 -12.79 6.84 99.48 0.68 -12.11 16 24 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 25 H -0.26 -12.24 6.87 99.48 0.68 -11.56 16 26 C 0.12 4.76 4.55 86.67 0.39 5.15 16 27 S 0.21 4.63 22.31 -56.49 -1.26 3.37 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 2.27 5.99 -2.39 -0.01 2.26 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.40 10.04 7.59 -92.71 -0.70 9.33 16 37 H 0.06 1.79 8.01 -2.39 -0.02 1.77 16 38 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 1.95 8.05 -2.39 -0.02 1.93 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 44 H 0.02 0.64 3.55 -2.39 -0.01 0.64 16 45 H 0.02 0.87 7.73 -2.39 -0.02 0.85 16 Total: -1.00 -77.70 378.12 -0.19 -77.89 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.26 Total: 14.09 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 7.12 Total: 12.12 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -6.33 Total: -128.72 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.65 Total: -27.34 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.67 Total: 48.59 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.26 Total: 3.37 kcal Total: -77.70 -0.19 -77.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028955199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.326 kcal (2) G-P(sol) polarization free energy of solvation -77.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds