Wall clock time and date at job start Tue Mar 31 2020 22:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00677 * 2 1 4 4 C 1.50696 * 109.47720 * 180.02562 * 3 2 1 5 5 N 1.29425 * 124.80687 * 89.96954 * 4 3 2 6 6 C 1.30946 * 117.36294 * 180.02562 * 5 4 3 7 7 C 1.50703 * 122.90339 * 179.97438 * 6 5 4 8 8 C 1.35658 * 114.19376 * 0.02562 * 6 5 4 9 9 C 1.46677 * 126.13180 * 180.02562 * 8 6 5 10 10 O 1.21688 * 120.00278 * 8.43176 * 9 8 6 11 11 N 1.34782 * 120.00007 * 188.43246 * 9 8 6 12 12 C 1.46499 * 119.99760 * 358.66443 * 11 9 8 13 13 C 1.46497 * 119.99845 * 178.66253 * 11 9 8 14 14 H 1.09002 * 110.78333 * 356.75986 * 13 11 9 15 15 C 1.55157 * 110.72156 * 120.00006 * 13 11 9 16 16 C 1.54908 * 101.62084 * 153.84392 * 15 13 11 17 17 N 1.47471 * 104.80997 * 323.04685 * 16 15 13 18 18 C 1.36935 * 125.62844 * 204.04619 * 17 16 15 19 19 H 1.08002 * 120.00083 * 180.02562 * 18 17 16 20 20 C 1.38817 * 120.00023 * 0.02772 * 18 17 16 21 21 N 1.31616 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99729 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47579 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47126 * 119.99962 * 22 20 18 25 25 H 1.48504 * 109.46815 * 239.99236 * 22 20 18 26 26 C 1.47027 * 108.72409 * 24.06561 * 17 16 15 27 27 S 1.70954 * 124.80376 * 270.33010 * 4 3 2 28 28 H 1.08997 * 109.47608 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46447 * 300.00230 * 1 2 3 30 30 H 1.09005 * 109.47021 * 59.99655 * 1 2 3 31 31 H 1.08999 * 109.47148 * 59.99934 * 3 2 1 32 32 H 1.09010 * 109.46726 * 300.00283 * 3 2 1 33 33 H 1.08994 * 109.47614 * 270.00410 * 7 6 5 34 34 H 1.09003 * 109.46590 * 30.00409 * 7 6 5 35 35 H 1.09004 * 109.47229 * 149.99971 * 7 6 5 36 36 H 1.08996 * 109.46763 * 276.33345 * 12 11 9 37 37 H 1.08993 * 109.47452 * 36.33734 * 12 11 9 38 38 H 1.09002 * 109.46614 * 156.33772 * 12 11 9 39 39 H 1.08993 * 111.00449 * 271.94078 * 15 13 11 40 40 H 1.09002 * 110.99925 * 35.75132 * 15 13 11 41 41 H 1.09001 * 110.36575 * 81.84594 * 16 15 13 42 42 H 1.08999 * 110.36835 * 204.17549 * 16 15 13 43 43 H 0.97003 * 119.99877 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.88383 * 239.55852 * 26 17 16 45 45 H 1.08999 * 109.87826 * 118.38982 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2486 1.1276 -1.0636 6 6 5.5430 1.0246 -0.8945 7 6 6.5151 0.9465 -2.0435 8 6 5.9332 0.9932 0.4043 9 6 7.3128 0.8838 0.8905 10 8 8.2417 0.9657 0.1088 11 7 7.5515 0.6926 2.2032 12 6 6.4344 0.6233 3.1483 13 6 8.9282 0.5541 2.6847 14 1 9.6324 0.5717 1.8529 15 6 9.2648 1.6666 3.7125 16 6 10.3757 0.9890 4.5530 17 7 9.9678 -0.4250 4.6471 18 6 10.3445 -1.3002 5.6306 19 1 9.9907 -2.3204 5.6102 20 6 11.1811 -0.8760 6.6539 21 7 11.6127 0.3671 6.6785 22 14 11.6955 -2.0701 7.9951 23 1 11.0797 -3.3969 7.7396 24 1 13.1745 -2.2029 7.9991 25 1 11.2410 -1.5595 9.3135 26 6 9.0903 -0.7397 3.5101 27 16 4.4852 1.1009 1.4027 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8463 -0.8901 33 1 6.6678 -0.0966 -2.3200 34 1 6.1137 1.4936 -2.8967 35 1 7.4667 1.3864 -1.7449 36 1 6.1378 1.6323 3.4349 37 1 5.5916 0.1166 2.6783 38 1 6.7427 0.0695 4.0351 39 1 9.6421 2.5588 3.2130 40 1 8.3980 1.9037 4.3294 41 1 11.3380 1.0731 4.0480 42 1 10.4268 1.4367 5.5455 43 1 12.1970 0.6636 7.3938 44 1 8.1178 -1.0720 3.8733 45 1 9.5443 -1.5170 2.8956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033627161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:57 Heat of formation + Delta-G solvation = 12.289240 kcal Electronic energy + Delta-G solvation = -27226.315276 eV Core-core repulsion = 23372.691262 eV Total energy + Delta-G solvation = -3853.624013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55198 -39.58930 -38.20169 -37.31809 -34.97520 -32.72667 -32.13279 -29.51647 -29.07777 -28.58450 -27.56328 -26.68137 -26.40102 -24.49264 -23.00275 -22.08472 -20.26893 -19.65344 -18.68424 -18.49347 -17.10827 -17.01416 -16.79155 -16.40769 -15.97223 -15.67267 -15.44217 -14.72150 -14.44139 -14.23293 -14.13177 -13.89914 -13.26545 -13.24283 -13.15385 -12.96382 -12.73063 -12.55381 -12.40830 -12.08075 -11.91807 -11.83627 -11.61662 -11.44912 -11.11536 -10.96511 -10.85679 -10.50443 -10.28188 -10.12713 -9.91069 -9.87833 -9.68183 -9.60798 -9.52017 -9.02819 -8.71184 -8.42923 -6.90416 -5.70682 -3.13321 0.01130 0.99079 1.40285 2.22081 2.93050 3.09839 3.32022 3.36875 3.42802 3.45096 3.92695 4.44124 4.46112 4.47534 4.79090 4.86160 4.90401 4.91184 4.94576 4.99823 5.21208 5.24270 5.36877 5.44137 5.50420 5.59042 5.60896 5.64176 5.68013 5.78438 5.81611 6.14840 6.24000 6.27876 6.45422 6.50925 6.55744 6.64026 6.86849 7.34541 7.45409 7.49722 7.57469 7.78934 8.10574 8.29302 9.15832 9.76261 10.39834 11.33132 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.002563 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.141088 B =10921.387507 C =11849.706213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.016 3.984 5 N -0.464 5.464 6 C 0.146 3.854 7 C -0.092 4.092 8 C -0.293 4.293 9 C 0.594 3.406 10 O -0.524 6.524 11 N -0.592 5.592 12 C 0.061 3.939 13 C 0.128 3.872 14 H 0.108 0.892 15 C -0.152 4.152 16 C 0.153 3.847 17 N -0.602 5.602 18 C -0.223 4.223 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.128 3.872 27 S 0.222 5.778 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.016 0.984 42 H 0.110 0.890 43 H 0.252 0.748 44 H 0.029 0.971 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.229 4.513 -11.946 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.258 4.258 5 N -0.180 5.180 6 C 0.007 3.993 7 C -0.151 4.151 8 C -0.417 4.417 9 C 0.381 3.619 10 O -0.403 6.403 11 N -0.323 5.323 12 C -0.084 4.084 13 C 0.025 3.975 14 H 0.126 0.874 15 C -0.191 4.191 16 C 0.028 3.972 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.746 3.254 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.001 3.999 27 S 0.481 5.519 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.128 0.872 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -21.059 4.404 -11.558 24.423 hybrid contribution 0.412 -0.502 -0.009 0.649 sum -20.647 3.903 -11.567 23.986 Atomic orbital electron populations 1.22816 0.79949 1.03389 1.00342 1.87972 1.20345 1.26246 1.95517 1.20806 0.84722 0.86090 1.02439 1.27379 1.00880 1.02821 0.94756 1.66081 1.04448 1.15391 1.32083 1.20611 0.89853 0.95135 0.93700 1.20705 0.97430 1.03489 0.93447 1.25616 0.98190 1.20478 0.97438 1.16717 0.85981 0.77035 0.82214 1.90761 1.43669 1.51317 1.54584 1.47694 1.08113 1.70536 1.05989 1.22066 0.88191 1.02828 0.95276 1.22337 0.80363 0.97207 0.97555 0.87414 1.23396 1.01325 0.97000 0.97391 1.21965 0.91260 0.83689 1.00268 1.44459 1.55195 1.08540 1.24684 1.19111 1.23824 0.92116 1.00068 0.90366 1.24799 0.99800 0.96803 0.99170 1.69790 1.38312 1.14928 1.33953 0.85984 0.78105 0.79780 0.81533 1.20509 1.21697 1.21710 1.21547 0.94780 0.93810 0.89755 1.84416 0.95231 1.63899 1.08308 0.89071 0.93615 0.93610 0.90741 0.90180 0.90216 0.90826 0.87736 0.91434 0.91485 0.87595 0.91884 0.91755 0.96572 0.87188 0.93677 0.95298 0.95432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.66 10.69 -35.23 -0.38 -4.04 16 3 C 0.14 1.16 6.51 36.00 0.23 1.39 16 4 C 0.02 0.18 7.02 -13.29 -0.09 0.08 16 5 N -0.46 -6.22 10.50 -7.70 -0.08 -6.30 16 6 C 0.15 2.02 6.79 -83.89 -0.57 1.45 16 7 C -0.09 -1.14 9.81 36.01 0.35 -0.79 16 8 C -0.29 -4.08 6.25 -37.10 -0.23 -4.31 16 9 C 0.59 9.55 7.62 -12.85 -0.10 9.45 16 10 O -0.52 -9.63 13.64 5.20 0.07 -9.56 16 11 N -0.59 -9.22 2.89 -173.38 -0.50 -9.72 16 12 C 0.06 0.77 7.73 59.85 0.46 1.23 16 13 C 0.13 2.33 3.35 -66.10 -0.22 2.11 16 14 H 0.11 2.10 7.01 -51.93 -0.36 1.73 16 15 C -0.15 -2.83 6.65 -24.58 -0.16 -3.00 16 16 C 0.15 3.63 5.89 -2.50 -0.01 3.62 16 17 N -0.60 -15.04 3.40 -170.03 -0.58 -15.62 16 18 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16 22 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.13 2.64 6.76 -3.06 -0.02 2.62 16 27 S 0.22 2.35 18.12 -107.50 -1.95 0.41 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.43 5.85 -51.93 -0.30 1.13 16 36 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 37 H 0.07 0.75 4.48 -22.80 -0.10 0.65 16 38 H 0.11 1.41 6.19 -51.93 -0.32 1.09 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.14 7.34 -51.93 -0.38 0.76 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.11 2.91 5.88 -51.93 -0.31 2.60 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.03 0.57 6.02 -51.93 -0.31 0.26 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -32.55 369.54 -8.08 -40.63 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.27 Total: -0.82 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 0.50 Total: 8.54 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.60 Total: -57.38 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.31 Total: -13.60 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.95 Total: 0.41 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.55 -8.08 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033627161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.922 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds