Wall clock time and date at job start Tue Mar 31 2020 22:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00677 * 2 1 4 4 C 1.50696 * 109.47720 * 180.02562 * 3 2 1 5 5 N 1.29425 * 124.80687 * 89.96954 * 4 3 2 6 6 C 1.30946 * 117.36294 * 180.02562 * 5 4 3 7 7 C 1.50703 * 122.90339 * 179.97438 * 6 5 4 8 8 C 1.35658 * 114.19376 * 0.02562 * 6 5 4 9 9 C 1.46677 * 126.13180 * 180.02562 * 8 6 5 10 10 O 1.21688 * 120.00278 * 8.43176 * 9 8 6 11 11 N 1.34782 * 120.00007 * 188.43246 * 9 8 6 12 12 C 1.46499 * 119.99760 * 358.66443 * 11 9 8 13 13 C 1.46497 * 119.99845 * 178.66253 * 11 9 8 14 14 H 1.09002 * 110.78333 * 356.75986 * 13 11 9 15 15 C 1.55157 * 110.72156 * 120.00006 * 13 11 9 16 16 C 1.54908 * 101.62084 * 153.84392 * 15 13 11 17 17 N 1.47471 * 104.80997 * 323.04685 * 16 15 13 18 18 C 1.36935 * 125.62844 * 204.04619 * 17 16 15 19 19 H 1.08002 * 120.00083 * 180.02562 * 18 17 16 20 20 C 1.38817 * 120.00023 * 0.02772 * 18 17 16 21 21 N 1.31616 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99729 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47579 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47126 * 119.99962 * 22 20 18 25 25 H 1.48504 * 109.46815 * 239.99236 * 22 20 18 26 26 C 1.47027 * 108.72409 * 24.06561 * 17 16 15 27 27 S 1.70954 * 124.80376 * 270.33010 * 4 3 2 28 28 H 1.08997 * 109.47608 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46447 * 300.00230 * 1 2 3 30 30 H 1.09005 * 109.47021 * 59.99655 * 1 2 3 31 31 H 1.08999 * 109.47148 * 59.99934 * 3 2 1 32 32 H 1.09010 * 109.46726 * 300.00283 * 3 2 1 33 33 H 1.08994 * 109.47614 * 270.00410 * 7 6 5 34 34 H 1.09003 * 109.46590 * 30.00409 * 7 6 5 35 35 H 1.09004 * 109.47229 * 149.99971 * 7 6 5 36 36 H 1.08996 * 109.46763 * 276.33345 * 12 11 9 37 37 H 1.08993 * 109.47452 * 36.33734 * 12 11 9 38 38 H 1.09002 * 109.46614 * 156.33772 * 12 11 9 39 39 H 1.08993 * 111.00449 * 271.94078 * 15 13 11 40 40 H 1.09002 * 110.99925 * 35.75132 * 15 13 11 41 41 H 1.09001 * 110.36575 * 81.84594 * 16 15 13 42 42 H 1.08999 * 110.36835 * 204.17549 * 16 15 13 43 43 H 0.97003 * 119.99877 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.88383 * 239.55852 * 26 17 16 45 45 H 1.08999 * 109.87826 * 118.38982 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2486 1.1276 -1.0636 6 6 5.5430 1.0246 -0.8945 7 6 6.5151 0.9465 -2.0435 8 6 5.9332 0.9932 0.4043 9 6 7.3128 0.8838 0.8905 10 8 8.2417 0.9657 0.1088 11 7 7.5515 0.6926 2.2032 12 6 6.4344 0.6233 3.1483 13 6 8.9282 0.5541 2.6847 14 1 9.6324 0.5717 1.8529 15 6 9.2648 1.6666 3.7125 16 6 10.3757 0.9890 4.5530 17 7 9.9678 -0.4250 4.6471 18 6 10.3445 -1.3002 5.6306 19 1 9.9907 -2.3204 5.6102 20 6 11.1811 -0.8760 6.6539 21 7 11.6127 0.3671 6.6785 22 14 11.6955 -2.0701 7.9951 23 1 11.0797 -3.3969 7.7396 24 1 13.1745 -2.2029 7.9991 25 1 11.2410 -1.5595 9.3135 26 6 9.0903 -0.7397 3.5101 27 16 4.4852 1.1009 1.4027 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8463 -0.8901 33 1 6.6678 -0.0966 -2.3200 34 1 6.1137 1.4936 -2.8967 35 1 7.4667 1.3864 -1.7449 36 1 6.1378 1.6323 3.4349 37 1 5.5916 0.1166 2.6783 38 1 6.7427 0.0695 4.0351 39 1 9.6421 2.5588 3.2130 40 1 8.3980 1.9037 4.3294 41 1 11.3380 1.0731 4.0480 42 1 10.4268 1.4367 5.5455 43 1 12.1970 0.6636 7.3938 44 1 8.1178 -1.0720 3.8733 45 1 9.5443 -1.5170 2.8956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033627161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:56 Heat of formation + Delta-G solvation = -9.704187 kcal Electronic energy + Delta-G solvation = -27227.268982 eV Core-core repulsion = 23372.691262 eV Total energy + Delta-G solvation = -3854.577720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65920 -40.72914 -39.03538 -38.67612 -36.44244 -34.22116 -33.43481 -31.27207 -29.92942 -29.79136 -28.84514 -28.01825 -26.95588 -26.33653 -23.84397 -23.32480 -22.13656 -21.02837 -19.82301 -19.48410 -18.98283 -17.89036 -17.66169 -17.52470 -16.89129 -16.71734 -16.60296 -16.28068 -15.86849 -15.48901 -15.33782 -15.03192 -14.75240 -14.46618 -14.16752 -14.08701 -13.80217 -13.62249 -13.44359 -13.39538 -13.25525 -13.06364 -12.97672 -12.73184 -12.51566 -12.40725 -12.33798 -12.18639 -11.97820 -11.82686 -11.40922 -11.13692 -10.79468 -10.76551 -10.68731 -10.45720 -10.08414 -9.60127 -8.92034 -7.78099 -5.23662 -0.94267 0.08166 0.48004 1.22195 1.48524 1.49661 1.59563 1.69960 1.95978 2.50134 2.62629 3.20521 3.32507 3.35758 3.68358 3.78087 3.83126 3.89584 3.91388 4.01385 4.18845 4.20695 4.34199 4.37159 4.51091 4.53803 4.59937 4.61456 4.65551 4.67035 4.70582 4.84852 4.87086 4.90438 4.95207 5.03767 5.28299 5.43149 5.46221 5.57625 5.77373 6.05850 6.14493 6.28360 6.54633 6.87839 7.09021 7.74531 8.37780 9.23902 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.002563 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.141088 B =10921.387507 C =11849.706213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.135 3.865 4 C 0.015 3.985 5 N -0.488 5.488 6 C 0.140 3.860 7 C -0.090 4.090 8 C -0.326 4.326 9 C 0.593 3.407 10 O -0.556 6.556 11 N -0.593 5.593 12 C 0.057 3.943 13 C 0.145 3.855 14 H 0.093 0.907 15 C -0.132 4.132 16 C 0.157 3.843 17 N -0.621 5.621 18 C -0.237 4.237 19 H 0.082 0.918 20 C -0.064 4.064 21 N -0.948 5.948 22 Si 0.981 3.019 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.288 1.288 26 C 0.128 3.872 27 S 0.284 5.716 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.081 0.919 41 H -0.013 1.013 42 H 0.083 0.917 43 H 0.248 0.752 44 H 0.047 0.953 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.215 4.539 -11.638 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.056 3.944 4 C -0.258 4.258 5 N -0.205 5.205 6 C 0.001 3.999 7 C -0.148 4.148 8 C -0.450 4.450 9 C 0.382 3.618 10 O -0.437 6.437 11 N -0.323 5.323 12 C -0.087 4.087 13 C 0.041 3.959 14 H 0.111 0.889 15 C -0.171 4.171 16 C 0.031 3.969 17 N -0.348 5.348 18 C -0.366 4.366 19 H 0.100 0.900 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.809 3.191 23 H -0.192 1.192 24 H -0.222 1.222 25 H -0.215 1.215 26 C 0.002 3.998 27 S 0.544 5.456 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.005 0.995 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -24.103 4.424 -11.252 26.965 hybrid contribution 1.223 -0.528 -0.153 1.341 sum -22.880 3.896 -11.404 25.859 Atomic orbital electron populations 1.23017 0.78013 1.04256 1.01720 1.87917 1.22486 1.26882 1.95815 1.21051 0.82693 0.86198 1.04485 1.28040 1.02459 1.00646 0.94685 1.66158 1.04225 1.16936 1.33142 1.20802 0.90421 0.94664 0.94030 1.20659 0.96693 1.03666 0.93828 1.25442 0.98404 1.22679 0.98517 1.16980 0.86715 0.76261 0.81878 1.90743 1.45004 1.52618 1.55324 1.47629 1.07608 1.70571 1.06513 1.22268 0.87530 1.04459 0.94416 1.21883 0.81999 0.95605 0.96457 0.88936 1.23187 1.00012 0.97095 0.96836 1.21734 0.91945 0.83856 0.99340 1.44704 1.55746 1.08864 1.25446 1.19456 1.23766 0.92726 1.00653 0.90028 1.25618 1.00211 0.98437 1.01400 1.70023 1.38809 1.16458 1.34451 0.84974 0.77115 0.78327 0.78667 1.19163 1.22243 1.21508 1.21634 0.94565 0.94869 0.88739 1.84005 0.92503 1.62487 1.06555 0.88569 0.91803 0.92644 0.87581 0.89266 0.90010 0.89436 0.89281 0.89067 0.90012 0.88159 0.90375 0.90077 0.99486 0.89919 0.94189 0.93531 0.96417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.79 10.69 -148.98 -1.59 -8.38 16 3 C 0.13 1.82 6.51 71.23 0.46 2.28 16 4 C 0.01 0.30 7.02 88.46 0.62 0.92 16 5 N -0.49 -12.31 10.50 -178.29 -1.87 -14.18 16 6 C 0.14 3.77 6.79 42.09 0.29 4.06 16 7 C -0.09 -2.22 9.81 71.24 0.70 -1.53 16 8 C -0.33 -8.65 6.25 23.88 0.15 -8.50 16 9 C 0.59 18.68 7.62 86.45 0.66 19.34 16 10 O -0.56 -20.67 13.64 -4.31 -0.06 -20.73 16 11 N -0.59 -17.68 2.89 -820.67 -2.37 -20.04 16 12 C 0.06 1.27 7.73 127.77 0.99 2.26 16 13 C 0.14 5.21 3.35 46.18 0.15 5.37 16 14 H 0.09 3.66 7.01 -2.39 -0.02 3.64 16 15 C -0.13 -4.84 6.65 31.99 0.21 -4.63 16 16 C 0.16 7.60 5.89 86.85 0.51 8.11 16 17 N -0.62 -31.40 3.40 -691.86 -2.35 -33.75 16 18 C -0.24 -13.02 10.27 84.04 0.86 -12.16 16 19 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 20 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 21 N -0.95 -55.34 10.09 21.65 0.22 -55.12 16 22 Si 0.98 44.80 29.55 68.60 2.03 46.83 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 26 C 0.13 5.27 6.76 86.73 0.59 5.86 16 27 S 0.28 5.19 18.12 -56.49 -1.02 4.16 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 2.50 5.85 -2.39 -0.01 2.49 16 36 H 0.09 1.63 7.88 -2.39 -0.02 1.61 16 37 H 0.08 1.57 4.48 -20.91 -0.09 1.48 16 38 H 0.10 2.42 6.19 -2.39 -0.01 2.40 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.63 16 40 H 0.08 2.71 7.34 -2.39 -0.02 2.70 16 41 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H 0.08 4.50 5.88 -2.39 -0.01 4.49 16 43 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 44 H 0.05 1.77 6.02 -2.39 -0.01 1.76 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.76 369.54 1.82 -69.94 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.93 Total: 11.51 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 7.91 Total: 19.76 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -6.37 Total: -123.09 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.65 Total: -29.11 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.02 Total: 4.16 kcal Total: -71.76 1.82 -69.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033627161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.239 kcal (2) G-P(sol) polarization free energy of solvation -71.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds