Wall clock time and date at job start Tue Mar 31 2020 22:29:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 S 1.77226 * 127.34339 * 2 1
4 4 C 1.72204 * 94.84963 * 179.97438 * 3 2 1
5 5 O 1.21825 * 127.06036 * 179.97438 * 4 3 2
6 6 N 1.34251 * 105.88484 * 359.97438 * 4 3 2
7 7 C 1.46499 * 121.38010 * 179.97438 * 6 4 3
8 8 C 1.50701 * 109.46992 * 90.02608 * 7 6 4
9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6
10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6
11 11 C 1.46490 * 120.00111 * 0.02562 * 10 8 7
12 12 C 1.46497 * 119.99566 * 180.02562 * 10 8 7
13 13 H 1.09001 * 110.64634 * 358.31564 * 12 10 8
14 14 C 1.55157 * 110.72336 * 234.97761 * 12 10 8
15 15 C 1.54908 * 101.58256 * 277.14248 * 14 12 10
16 16 N 1.47419 * 104.83193 * 322.99061 * 15 14 12
17 17 C 1.36942 * 125.64768 * 204.16439 * 16 15 14
18 18 H 1.07999 * 119.99774 * 179.97438 * 17 16 15
19 19 C 1.38817 * 119.99883 * 359.95656 * 17 16 15
20 20 N 1.31621 * 119.99828 * 359.97438 * 19 17 16
21 21 Si 1.86795 * 119.99780 * 180.02562 * 19 17 16
22 22 H 1.48496 * 109.47287 * 59.99970 * 21 19 17
23 23 H 1.48503 * 109.47144 * 179.97438 * 21 19 17
24 24 H 1.48499 * 109.47055 * 299.99413 * 21 19 17
25 25 C 1.47022 * 108.70576 * 24.12519 * 16 15 14
26 26 C 1.32564 * 127.34002 * 180.26336 * 2 1 3
27 27 C 1.50706 * 121.64538 * 359.97438 * 26 2 1
28 28 H 1.09004 * 109.46709 * 0.02562 * 1 2 3
29 29 H 1.08998 * 109.47189 * 120.02192 * 1 2 3
30 30 H 1.08999 * 109.47267 * 240.02670 * 1 2 3
31 31 H 1.09002 * 109.47391 * 330.02599 * 7 6 4
32 32 H 1.09001 * 109.46813 * 210.02655 * 7 6 4
33 33 H 1.08995 * 109.47620 * 89.99771 * 11 10 8
34 34 H 1.09006 * 109.47028 * 209.99878 * 11 10 8
35 35 H 1.09002 * 109.47109 * 329.99455 * 11 10 8
36 36 H 1.09007 * 110.99769 * 35.21498 * 14 12 10
37 37 H 1.08993 * 111.00574 * 159.06483 * 14 12 10
38 38 H 1.08994 * 110.37086 * 204.14131 * 15 14 12
39 39 H 1.09011 * 110.46151 * 81.87361 * 15 14 12
40 40 H 0.96992 * 119.99621 * 179.97438 * 20 19 17
41 41 H 1.08998 * 109.88192 * 239.53075 * 25 16 15
42 42 H 1.08996 * 109.88116 * 118.36274 * 25 16 15
43 43 H 1.08998 * 109.47076 * 270.24301 * 27 26 2
44 44 H 1.08999 * 109.46887 * 30.24468 * 27 26 2
45 45 H 1.09002 * 109.47222 * 150.24087 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 16 2.5820 1.4090 0.0000
4 6 4.0345 0.4839 0.0008
5 8 5.1760 0.9094 0.0006
6 7 3.6508 -0.8026 0.0016
7 6 4.6312 -1.8911 0.0018
8 6 4.9674 -2.2640 1.4227
9 8 4.4395 -1.6785 2.3444
10 7 5.8538 -3.2489 1.6692
11 6 6.4910 -3.9565 0.5560
12 6 6.1801 -3.6118 3.0505
13 1 5.6448 -2.9724 3.7526
14 6 7.7111 -3.5363 3.2910
15 6 8.1791 -4.9100 2.7491
16 7 7.1120 -5.8512 3.1346
17 6 7.2607 -7.2025 3.2990
18 1 6.4134 -7.8082 3.5846
19 6 8.5005 -7.7939 3.0981
20 7 9.5328 -7.0557 2.7492
21 14 8.7031 -9.6373 3.3217
22 1 7.8075 -10.3519 2.3771
23 1 10.1128 -10.0169 3.0496
24 1 8.3502 -10.0086 4.7155
25 6 5.8618 -5.0986 3.3142
26 6 2.3111 -1.0539 -0.0048
27 6 1.7706 -2.4608 -0.0107
28 1 -0.3633 1.0277 -0.0005
29 1 -0.3633 -0.5142 -0.8898
30 1 -0.3634 -0.5134 0.8902
31 1 5.5357 -1.5656 -0.5121
32 1 4.2131 -2.7568 -0.5119
33 1 7.4128 -3.4445 0.2799
34 1 6.7196 -4.9785 0.8583
35 1 5.8146 -3.9731 -0.2987
36 1 8.1561 -2.7197 2.7222
37 1 7.9354 -3.4382 4.3531
38 1 9.1238 -5.1979 3.2103
39 1 8.2821 -4.8768 1.6644
40 1 10.3991 -7.4689 2.6092
41 1 5.4966 -5.2244 4.3335
42 1 5.1129 -5.4490 2.6040
43 1 1.6366 -2.8028 1.0155
44 1 0.8114 -2.4793 -0.5281
45 1 2.4730 -3.1177 -0.5239
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033684761.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:29:49
Heat of formation + Delta-G solvation = 6.998204 kcal
Electronic energy + Delta-G solvation = -28115.260414 eV
Core-core repulsion = 24261.406964 eV
Total energy + Delta-G solvation = -3853.853450 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 1.78 seconds
Orbital eigenvalues (eV)
-41.41140 -39.67734 -37.82936 -37.42545 -34.56539 -33.78396 -32.25908 -30.44707
-29.72826 -29.06732 -28.04168 -26.26519 -25.32425 -24.42249 -23.65772 -21.01065
-20.24927 -19.91068 -18.80972 -18.41493 -17.67445 -17.16181 -16.79860 -16.23664
-15.68167 -15.39249 -15.26838 -14.73993 -14.23986 -14.12462 -13.95458 -13.87068
-13.77492 -13.37253 -13.16015 -12.79101 -12.76438 -12.69627 -12.33457 -12.24562
-12.09508 -11.85589 -11.65095 -11.58047 -11.14115 -11.11746 -10.95423 -10.88457
-10.44641 -10.21458 -10.21214 -9.95586 -9.92835 -9.62739 -9.34043 -8.73506
-8.40834 -8.00629 -6.93725 -5.73917 -3.16503 0.80183 1.21718 1.57394
1.98329 2.50539 2.56173 3.15690 3.34524 3.39562 3.40453 4.22120
4.38509 4.42412 4.46278 4.72285 4.80756 4.89758 5.10406 5.15004
5.25754 5.30764 5.35766 5.37258 5.42907 5.43646 5.48173 5.59503
5.63413 5.73718 5.82765 5.96884 6.08550 6.23129 6.27016 6.47854
6.51915 6.53679 6.62076 6.89191 7.17108 7.37616 7.51557 7.54181
7.77007 8.15997 8.26994 9.12857 9.73289 10.37319 11.29440
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.024848 B = 0.002640 C = 0.002517
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1126.603369 B =10603.482953 C =11123.353874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C -0.211 4.211
3 S 0.001 5.999
4 C 0.489 3.511
5 O -0.472 6.472
6 N -0.513 5.513
7 C 0.081 3.919
8 C 0.498 3.502
9 O -0.536 6.536
10 N -0.587 5.587
11 C 0.064 3.936
12 C 0.126 3.874
13 H 0.099 0.901
14 C -0.155 4.155
15 C 0.145 3.855
16 N -0.602 5.602
17 C -0.225 4.225
18 H 0.077 0.923
19 C -0.009 4.009
20 N -0.921 5.921
21 Si 0.915 3.085
22 H -0.286 1.286
23 H -0.290 1.290
24 H -0.285 1.285
25 C 0.129 3.871
26 C 0.108 3.892
27 C -0.101 4.101
28 H 0.072 0.928
29 H 0.076 0.924
30 H 0.076 0.924
31 H 0.123 0.877
32 H 0.123 0.877
33 H 0.059 0.941
34 H 0.108 0.892
35 H 0.058 0.942
36 H 0.061 0.939
37 H 0.072 0.928
38 H 0.106 0.894
39 H 0.022 0.978
40 H 0.253 0.747
41 H 0.033 0.967
42 H 0.026 0.974
43 H 0.089 0.911
44 H 0.091 0.909
45 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.373 11.290 -9.410 22.002
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.331 4.331
3 S 0.244 5.756
4 C 0.171 3.829
5 O -0.352 6.352
6 N -0.233 5.233
7 C -0.048 4.048
8 C 0.284 3.716
9 O -0.413 6.413
10 N -0.320 5.320
11 C -0.079 4.079
12 C 0.022 3.978
13 H 0.117 0.883
14 C -0.194 4.194
15 C 0.020 3.980
16 N -0.329 5.329
17 C -0.353 4.353
18 H 0.094 0.906
19 C -0.204 4.204
20 N -0.569 5.569
21 Si 0.745 3.255
22 H -0.212 1.212
23 H -0.216 1.216
24 H -0.212 1.212
25 C 0.002 3.998
26 C -0.003 4.003
27 C -0.160 4.160
28 H 0.091 0.909
29 H 0.094 0.906
30 H 0.095 0.905
31 H 0.141 0.859
32 H 0.141 0.859
33 H 0.078 0.922
34 H 0.126 0.874
35 H 0.077 0.923
36 H 0.080 0.920
37 H 0.091 0.909
38 H 0.124 0.876
39 H 0.040 0.960
40 H 0.064 0.936
41 H 0.051 0.949
42 H 0.044 0.956
43 H 0.107 0.893
44 H 0.109 0.891
45 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -15.907 13.033 -8.939 22.423
hybrid contribution 0.659 -2.383 0.083 2.474
sum -15.248 10.651 -8.856 20.600
Atomic orbital electron populations
1.20063 0.85733 1.03139 1.02772 1.23409 0.99573 0.91958 1.18153
1.84983 0.97939 1.11318 1.81341 1.21472 0.94605 0.84593 0.82253
1.90966 1.19289 1.71698 1.53198 1.45565 1.05802 1.07035 1.64934
1.21805 0.94698 0.91290 0.96990 1.20584 0.79952 0.80232 0.90867
1.90709 1.52455 1.52548 1.45614 1.47780 1.41636 1.34497 1.08053
1.22196 0.97138 1.00615 0.87908 1.22191 0.97450 0.96777 0.81350
0.88274 1.23358 0.93675 1.00858 1.01540 1.22126 0.95142 0.83689
0.97027 1.44541 1.03772 1.03621 1.80995 1.19014 0.95033 0.81428
1.39876 0.90555 1.24782 0.95721 0.98232 1.01696 1.69782 1.00359
1.33315 1.53494 0.86154 0.76821 0.84546 0.77956 1.21224 1.21567
1.21156 1.21617 0.90768 0.89193 0.98221 1.19204 0.81814 0.98223
1.01009 1.20794 1.01879 0.88994 1.04327 0.90943 0.90563 0.90508
0.85880 0.85948 0.92236 0.87383 0.92335 0.91985 0.90927 0.87619
0.96020 0.93602 0.94901 0.95586 0.89278 0.89072 0.90722
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 35.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.34 9.56 36.01 0.34 0.00 16
2 C -0.21 -2.03 6.72 -36.22 -0.24 -2.27 16
3 S 0.00 0.01 22.96 -107.50 -2.47 -2.46 16
4 C 0.49 7.33 8.27 53.82 0.45 7.78 16
5 O -0.47 -8.52 17.55 5.08 0.09 -8.43 16
6 N -0.51 -6.56 2.09 -118.57 -0.25 -6.81 16
7 C 0.08 0.96 4.31 -5.19 -0.02 0.93 16
8 C 0.50 7.75 7.74 -10.98 -0.09 7.66 16
9 O -0.54 -10.20 15.80 5.56 0.09 -10.11 16
10 N -0.59 -9.28 2.82 -171.84 -0.49 -9.77 16
11 C 0.06 0.90 8.34 59.84 0.50 1.40 16
12 C 0.13 2.27 3.58 -66.10 -0.24 2.03 16
13 H 0.10 1.85 6.99 -51.93 -0.36 1.48 16
14 C -0.15 -2.94 6.53 -24.58 -0.16 -3.10 16
15 C 0.14 3.26 5.00 -2.53 -0.01 3.25 16
16 N -0.60 -14.39 2.97 -170.07 -0.50 -14.89 16
17 C -0.23 -5.94 10.27 -15.06 -0.15 -6.10 16
18 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16
19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16
20 N -0.92 -25.55 10.09 55.49 0.56 -24.99 16
21 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16
22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16
23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
25 C 0.13 2.59 6.24 -3.06 -0.02 2.57 16
26 C 0.11 1.11 6.59 -82.51 -0.54 0.57 16
27 C -0.10 -0.72 9.46 36.01 0.34 -0.38 16
28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
29 H 0.08 0.31 7.99 -51.93 -0.41 -0.10 16
30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.12 1.39 7.77 -51.93 -0.40 0.99 16
32 H 0.12 1.01 5.37 -51.93 -0.28 0.73 16
33 H 0.06 0.81 7.99 -51.93 -0.41 0.39 16
34 H 0.11 1.89 5.19 -51.93 -0.27 1.62 16
35 H 0.06 0.60 6.44 -51.93 -0.33 0.26 16
36 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16
37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16
38 H 0.11 2.77 5.87 -51.93 -0.31 2.46 16
39 H 0.02 0.50 5.55 -51.92 -0.29 0.21 16
40 H 0.25 6.88 8.31 -40.82 -0.34 6.55 16
41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16
42 H 0.03 0.52 8.04 -51.93 -0.42 0.10 16
43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
44 H 0.09 0.42 7.41 -51.93 -0.39 0.03 16
45 H 0.07 0.47 6.18 -51.93 -0.32 0.15 16
LS Contribution 369.06 15.07 5.56 5.56
Total: -1.00 -33.20 369.06 -8.65 -41.86
By element:
Atomic # 1 Polarization: 6.10 SS G_CDS: -6.28 Total: -0.18 kcal
Atomic # 6 Polarization: 13.97 SS G_CDS: 0.06 Total: 14.02 kcal
Atomic # 7 Polarization: -55.78 SS G_CDS: -0.68 Total: -56.46 kcal
Atomic # 8 Polarization: -18.72 SS G_CDS: 0.18 Total: -18.54 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal
Atomic # 16 Polarization: 0.01 SS G_CDS: -2.47 Total: -2.46 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -33.20 -8.65 -41.86 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033684761.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.854 kcal
(2) G-P(sol) polarization free energy of solvation -33.201 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.78 seconds